mRNA_L-elsbetiae_contig1457.3340.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1457.3340.1 vs. uniprot
Match: D7G2Y5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y5_ECTSI) HSP 1 Score: 427 bits (1099), Expect = 9.480e-142 Identity = 236/371 (63.61%), Postives = 272/371 (73.32%), Query Frame = 2
Query: 80 MLPLWTIAVAALMLSSVDGQSSGGPFLTCQDLQDAFELTKTQDVELLVDPSQDIVCDTFTTMSMDSNTLTVIPSYEQCGGCGSSVELHEIRFEITGGAKLFWQPRAAFVGTELQDVDGGAVYVGEGSTARFLNDFSTEDVGVRSVAE--GDFASYFLTGGCVYVDGYFVVEGEASFVRCEVGGGGESSPGPGGAMYVGPTGSVLFADTVHMSEVSIIDDEGNNGGGIYNEGKVNIRGNAHFEDLGAEYGGAIYNAEGAEFRFKSGATAVFNNCDSFDGDGGAVFNLGFFKLSGPALILNSRAPTFVVGSNAETRLSKDSVFWGFDSNGQDI-EPAILVKDGGELVGEDHVSFVDGAPTGCATVYYENNNSC 1183
M+PL I+ AAL+L V G G TCQDL DAF LT +QDV + + P QDI CD+FTTMSM +N+LTV+ Q G SV L+E+RFE+T GAKL W P A+F GTE QDV+GGAVYVGEGS+ARF + +T +VGVRSV E DFASY L GGCVYVDGYF VEG ASFV CE GGGESSPGPGG MYVG TGSVLFA V M +VSIIDDEGNNGGGIYN GKVNI+GNA F++L AE GGAI+N GAEFRFK GATA F +C SFDG GGAVFN G+FKLSGPA ++ RAPTFVVGS+ TRLS+ SVF G +G D EP + V +GG L G V+F + A TGC TVYYE + C
Sbjct: 1 MVPLSKISAAALLL--VSGSVCQGQLETCQDLLDAFALTASQDVVVEIQPGQDITCDSFTTMSMSANSLTVMTPDGQSG----SVGLNEVRFEVTDGAKLLWYPGASFTGTEYQDVNGGAVYVGEGSSARFYDTLTTSEVGVRSVPEEGSDFASYQLIGGCVYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSVLFAGEVTMQDVSIIDDEGNNGGGIYNLGKVNIKGNAVFQNLRAEAGGAIFNGSGAEFRFKKGATADFIDCLSFDGIGGAVFNAGYFKLSGPAEVVECRAPTFVVGSSGYTRLSEGSVFNG---DGSDYPEPIMFVMEGGRLTGVGKVTFDNAADTGCGTVYYEEGDVC 362
BLAST of mRNA_L-elsbetiae_contig1457.3340.1 vs. uniprot
Match: A0A6H5JYQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ0_9PHAE) HSP 1 Score: 419 bits (1076), Expect = 5.770e-135 Identity = 234/369 (63.41%), Postives = 269/369 (72.90%), Query Frame = 2
Query: 98 IAVAALMLSSVDGQSSGGPFLTCQDLQDAFELTKTQDVELLVDPSQDIVCDTFTTMSMDSNTLTVIPSYEQCGGCGSSVELHEIRFEITGGAKLFWQPRAAFVGTELQDVDGGAVYVGEGSTARFLNDFSTEDVGVRSVAE--GDFASYFLTGGCV----YVDGYFVVEGEASFVRCEVGGGGESSPGPGGAMYVGPTGSVLFADTVHMSEVSIIDDEGNNGGGIYNEGKVNIRGNAHFEDLGAEYGGAIYNAEGAEFRFKSGATAVFNNCDSFDGDGGAVFNLGFFKLSGPALILNSRAPTFVVGSNAETRLSKDSVFWGFDSNGQDI-EPAILVKDGGELVGEDHVSFVDGAPTGCATVYYENNNSC 1183
I+ AAL+L V G G TCQDL DAF LT +QDV + + P QDI CD FTTMSM +N+LTV + Q G SV L+E+RFE+T GAKLFW P A+F T+ QDV+GGAVYVGEGSTARF + +T +VGVRSV E DFASY L GGCV YVDGYF VEG ASFV CE GGGESSPGPGG MYVG TGSVLFA V M +VSIIDDEGNNGGGIYN GKVNI+GNA F++L AE GGAI+N GAEFRFK GATA F +C SFDG GGAVFN G+FKLSGPA ++ RAPTFVVGS+ TRLS+ SVF G +G + EP ILV++GG L G V+F + A TGC TVYYE + C
Sbjct: 237 ISAAALLL--VSGSVCRGQVETCQDLLDAFALTASQDVVVEIQPGQDITCDNFTTMSMSANSLTVTATDGQSG----SVGLNEVRFEVTDGAKLFWHPGASFTETDYQDVNGGAVYVGEGSTARFYDTLTTSEVGVRSVPEEGSDFASYELIGGCVRAYTYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSVLFAGEVTMQDVSIIDDEGNNGGGIYNLGKVNIKGNALFQNLRAEAGGAIFNGSGAEFRFKKGATADFIDCLSFDGTGGAVFNAGYFKLSGPAEVVECRAPTFVVGSSGYTRLSEGSVFNG---DGYEYPEPIILVREGGRLTGVGKVTFDNAAETGCGTVYYEEGDVC 596
BLAST of mRNA_L-elsbetiae_contig1457.3340.1 vs. uniprot
Match: A0A6H5JCE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE5_9PHAE) HSP 1 Score: 307 bits (786), Expect = 4.860e-94 Identity = 170/351 (48.43%), Postives = 226/351 (64.39%), Query Frame = 2
Query: 89 LWTIAVAALMLSSVDGQSSGGPFLTCQDLQDAFELTKTQDVELLVDPSQDIVCDTFTTMSMDSNTLTVIPSYEQCGGCGSSVELHEIRFEITGGAKLFWQPRAAFVGTELQD--VDGGAVYVGEGSTARFLNDFSTEDVGVRSVAE--GDFASYFLTGGCVYVDGYFVVEGEASFVRCEVGGGGESSPGPGGAMYVGPTGSVLFADTVHMSEVSIIDDEGNNGGGIYNEGKVNIRGNAHFEDLGAEYGGAIYNAEGAEFRFKSGATAVFNNCDSFDGDGGAVFNLGFFKLSGPALILNSRAPTFVVGSNAETRLSKDSVFWGFDSNGQDIEPAILVKDGGELVGEDHVSFV 1129
++T +++L L + G + G TC DL AFE T+T+DV + + P DI C+TFT M+M SN+LTV S E S L +R ++T GAKLFW+ F G E D VDGGAVYVGEGST RFLND +D+ + + + DF+S+ +GGCV+ GYF V+GEA+F C++ G GES PGPGGA+YVG TGSVLF V +++ I DD G +GGGIYN GKVNI+G++ FED+ A G AIYN EGA F F+SGA A F + ++ D +G A+FN GFFK SGPAL ++ P V N+ET +S+DS FW +D + D A+ V DG + D V+FV
Sbjct: 82 MYTKGLSSLALLLIPG-ACHGLIETCDDLLAAFEQTQTEDVVVEMHPFADIECETFTNMTMTSNSLTVSSS-ENIDNFSGSSSLVNVRLDVTNGAKLFWETNVIFEGDEETDLMVDGGAVYVGEGSTVRFLNDVQMQDIAIINERDEDSDFSSFVRSGGCVWTAGYFRVDGEATFTGCDISGAGESPPGPGGAVYVGETGSVLFNGGVTITDTHITDDFGGSGGGIYNLGKVNIKGDSRFEDISASSGVAIYNGEGATFNFRSGARAFFKDLNNRDSEGSALFNRGFFKFSGPALFFDAELPVIVAVDNSETIISEDSAFWTWDESPGD---ALSVNDGADFTLPDSVTFV 427
BLAST of mRNA_L-elsbetiae_contig1457.3340.1 vs. uniprot
Match: D7FGT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT1_ECTSI) HSP 1 Score: 279 bits (714), Expect = 1.720e-84 Identity = 152/300 (50.67%), Postives = 197/300 (65.67%), Query Frame = 2
Query: 161 TCQDLQDAFELTKTQDVELLVDPSQDIVCDTFTTMSMDSNTLTVIPSYEQCGGCGSSVELHEIRFEITGGAKLFWQPRAAFVGTELQD--VDGGAVYVGEGSTARFLNDFSTEDVGVRSVAE--GDFASYFLTGGCVYVDGYFVVEGEASFVRCEVGGGGESSPGPGGAMYVGPTGSVLFADTVHMSEVSIIDDEGNNGGGIYNEGKVNIRGNAHFEDLGAEYGGAIYNAEGAEFRFKSGATAVFNNCDSFDGDGGAVFNLGFFKLSGPALILNSRAPTFVVGSNAETRLSKDSVFWGFD 1048
TC+DLQ AF LT+TQDV + P QDI C+TFT M+M SNTLT+ S GSS L +R +T GA+L W+ F+G E + VDGGAV+VGEGST FLND ED+ + + + DFAS+ +GGCV+ G F+V+GEA+F RC++ G GES PGPGGA+YVG TGSV F V +SE I DD G GGGIYN G+V I G++ FED+ A G AIYN EGAEF F + A+A F + ++ D G + NLG+F+ SGPAL + + AP V ++T LS++S FW FD
Sbjct: 24 TCEDLQAAFNLTQTQDVIDEIHPFQDIECETFTNMTMTSNTLTLNSSENLDNFFGSS-SLTNVRLVVTNGAELIWETHVNFIGDEEVELMVDGGAVFVGEGSTVHFLNDLEMEDIRIINERDEDSDFASFVRSGGCVWTAGSFIVDGEATFTRCDITGAGESPPGPGGAIYVGATGSVSFNQGVAISETFITDDFGGQGGGIYNLGEVTIAGDSRFEDISASSGVAIYNGEGAEFYFTNDASAFFRDLNNRDSVGSGLTNLGYFEFSGPALFVEADAPVIVATETSQTILSENSAFWTFD 322
BLAST of mRNA_L-elsbetiae_contig1457.3340.1 vs. uniprot
Match: D7G1Q9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q9_ECTSI) HSP 1 Score: 277 bits (708), Expect = 5.430e-84 Identity = 162/351 (46.15%), Postives = 212/351 (60.40%), Query Frame = 2
Query: 89 LWTIAVAALMLSSVDGQSSGGPFLTCQDLQDAFELTKTQDVELLVDPSQDIVCDTFTTMSMDSNTLTVIPSYEQCGGCGSSVELHEIRFEITGGAKLFWQPRAAFVGTELQD--VDGGAVYVGEGSTARFLNDFSTEDVGVRSVAE--GDFASYFLTGGCVYVDGYFVVEGEASFVRCEVGGGGESSPGPGGAMYVGPTGSVLFADTVHMSEVSIIDDEGNNGGGIYNEGKVNIRGNAHFEDLGAEYGGAIYNAEGAEFRFKSGATAVFNNCDSFDGDGGAVFNLGFFKLSGPALILNSRAPTFVVGSNAETRLSKDSVFWGFDSNGQDIEPAILVKDGGELVGEDHVSFV 1129
++T +++L L + G + G TC DL AFE T+T+DV + + P DI CDTFT M+M SNTLT LFW+ F G E + VDGGAVYVGEGST RFLND DV + + + DFAS+ +GGCV+ GYF V+GEA+F C++ G GES PGPGGA+YVG TGSVLF + V ++E SI DD G GGGIYN GKVNI+G++ FE++ A G AIYN EGA F F++GA A F + ++ D +G A+ NLGFFK SGPA ++ P V N+ET LS+DS FW +D + D A+ V +G + D V+FV
Sbjct: 1 MYTKGLSSLALLLMPG-TCHGLIETCDDLLAAFEQTQTEDVVVEMHPFADIECDTFTNMTMTSNTLT-----------------------------LFWETNVIFEGDEEAELMVDGGAVYVGEGSTVRFLNDVQMRDVVIINERDEDSDFASFVRSGGCVWTAGYFRVDGEATFTGCDIIGAGESPPGPGGAVYVGETGSVLFNEGVTITETSITDDFGGKGGGIYNLGKVNIKGDSRFEEISASAGVAIYNGEGATFNFRNGAGAFFRDLNNRDSEGSALVNLGFFKFSGPAFFFDAELPVIVAMDNSETILSEDSAFWTWDESPGD---ALTVNEGADFTLPDSVTFV 318
BLAST of mRNA_L-elsbetiae_contig1457.3340.1 vs. uniprot
Match: D7G0Q4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Q4_ECTSI) HSP 1 Score: 270 bits (689), Expect = 8.530e-81 Identity = 159/351 (45.30%), Postives = 215/351 (61.25%), Query Frame = 2
Query: 89 LWTIAVAALMLSSVDGQSSGGPFLTCQDLQDAFELTKTQDVELLVDPSQDIVCDTFTTMSMDSNTLTVIPSYEQCGGCGSSVELHEIRFEITGGAKLFWQPRAAFVGTEL--QDVDGGAVYVGEGSTARFLNDFSTEDVGVRSVAEGDF--ASYFLTGGCVYVDGYFVVEGEASFVRCEVGGGGESSPGPGGAMYVGPTGSVLFADTVHMSEVSIIDDEGNNGGGIYNEGKVNIRGNAHFEDLGAEYGGAIYNAEGAEFRFKSGATAVFNNCDSFDGDGGAVFNLGFFKLSGPALILNSRAPTFVVGSNAETRLSKDSVFWGFDSNGQDIEPAILVKDGGELVGEDHVSFV 1129
++T ++L L + G + G TC+DLQ AFELT+TQDV + DI C FT M+M SNTLT + S E S L +R E+T GAKL W+ F+G E +V+GG V+VGEGST RFLND DV + + +GD A + GGCV+ G+F V+GEA+F C + G GES PG GGA++V TGSVLF V +S+ I +D G +GGGI+N GKVNI+G++ FE+L A G AI+N E A F F++GA+A F + + D +G A+ NLGFFK SGP L +++ AP V + T +S+DS FW F+++ E AI V D E+ VSFV
Sbjct: 1 MYTKLFSSLALLVIPGVARG-LIETCEDLQAAFELTQTQDVVDEISTFGDIECPMFTNMTMTSNTLT-LNSAEDLSITSGSTSLINVRLEVTNGAKLVWETSVFFLGDEEVENNVNGGGVFVGEGSTVRFLNDVQIRDVRITNERDGDSDNAVFVRDGGCVWTAGFFRVDGEATFTSCAIIGTGESPPGSGGAVFVDATGSVLFNQGVAISDTFITNDGGGDGGGIFNLGKVNIKGDSRFEELSARSGAAIFNGEDASFNFRNGASAFFRDLSNRDSEGSALVNLGFFKFSGPVLFVDAEAPVIVATEGSTTIISRDSAFWMFENDDVTGE-AISVADSAEVSIPGSVSFV 348
BLAST of mRNA_L-elsbetiae_contig1457.3340.1 vs. uniprot
Match: D8LG63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG63_ECTSI) HSP 1 Score: 159 bits (401), Expect = 2.190e-41 Identity = 82/165 (49.70%), Postives = 110/165 (66.67%), Query Frame = 2
Query: 494 DVGV--RSVAEGDFASYFLTGGCVYVDGYFVVEGEASFVRCEVGGGGESSPGPGGAMYVGPTGSVLFADTVHMSEVSIIDDEGNNGGGIYNEGKVNIRGNAHFEDLGAEYGGAIYNAEGAEFRFKSGATAVFNNCDSFDGDGGAVFNLGFFKLSGPALILNSRAP 982
DVG+ + + D+ASY +GGCV G F V G+A+F CE G GES+PGPGGA++V TGSV F++ V + E SI DD G GGGIYN G+VN+ G + FED+ A G A+YN EGA+ RF +GATA F + + D G A++ LG+F+ SGPAL + + P
Sbjct: 3 DVGIINETDEDSDYASYQHSGGCVRTAGTFTVNGDATFTGCESVGAGESAPGPGGAIFVSETGSVSFSEGVTIMETSITDDFGGQGGGIYNLGEVNVAGGSRFEDISASSGVAVYNGEGAQLRFTNGATACFRDLSNRDSVGSALYYLGYFEFSGPALFVEADTP 167
BLAST of mRNA_L-elsbetiae_contig1457.3340.1 vs. uniprot
Match: A0A6H5JF99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JF99_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 6.550e-14 Identity = 104/379 (27.44%), Postives = 150/379 (39.58%), Query Frame = 2
Query: 164 CQDLQDAFELTKTQDVELLVD-PSQD--------IVCDTFTTMSMDSNTLTVIPSYEQCGGCGSSVELHEIRFEITGGAKLFWQPRAAFVGT--ELQDVDGGAVYVGEGSTARFLNDFSTEDVGVRSVAEGDFASYFLTGGCVYVDGYFVVEGEASFVRCEVGGGGESSPGPGGAMYVGPTGSVLFADTVHMSEVSIIDDEGNNGGGIYNEGKVNIRGNAHF------EDLGAE--YGGAIYNAEGAEFRFKSGATAVFNNCDSFDGDGGAVFNLGFFKLSGPALILNSRAPTFVVGS-----NAETRLSKDSVFWG--FDSNGQDIEPAILVKDGGELVGEDHVSFVDGAPTGCATVYYENNNSCLQ*CDDTA*GVID 1222
C DL A T T+D LL+D PS I CDT TT+ +D ++ + + RFE+ GGA L + F E Q DGGA+YV GS+A F DV + EG+ +GG VY + E G+ G GGA+ VGP GS+ F + ++ G +GG I N G + R ++F ED + +GGAIY G+ F ++ S GGA++NLG L I ++A V N + + + + G NG + ++G G + S G+ T +NS + CDD A G D
Sbjct: 37 CDDLS-ALPTTLTEDTNLLLDVPSITYGNPDLNWISCDTITTVHVDGPYKFIVTTDMD------NYNFENARFEVKGGADLTFAIEGGFSFNYAESQGTDGGAIYVESGSSATF-------DVPSKVNFEGNTVEAGYSGGVVYAXXXXXXXXXXXXISNEARSSGDEPAGYGGAVAVGPEGSLEFQGALEFTDNKA--QSGGSGGAIANFGSLVFRRKSYFWFNTAAEDANGDGGFGGAIYAGYGSTTEFFRRTIWFYSEAAS----GGALYNLGEVMLYSNGFIRGNKAMGSVKAEGGHIYNLASAIGGEPTYTGGQIQLNGDKVN----FREGEAKRGGAYFSGGPGSSLSYHTAPNLFDNSASEYCDDYASGNTD 391 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1457.3340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1457.3340.1 >prot_L-elsbetiae_contig1457.3340.1 ID=prot_L-elsbetiae_contig1457.3340.1|Name=mRNA_L-elsbetiae_contig1457.3340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=371bp MLPLWTIAVAALMLSSVDGQSSGGPFLTCQDLQDAFELTKTQDVELLVDPback to top mRNA from alignment at L-elsbetiae_contig1457:5180..10372- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1457.3340.1 ID=mRNA_L-elsbetiae_contig1457.3340.1|Name=mRNA_L-elsbetiae_contig1457.3340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5193bp|location=Sequence derived from alignment at L-elsbetiae_contig1457:5180..10372- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1457:5180..10372- >mRNA_L-elsbetiae_contig1457.3340.1 ID=mRNA_L-elsbetiae_contig1457.3340.1|Name=mRNA_L-elsbetiae_contig1457.3340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2226bp|location=Sequence derived from alignment at L-elsbetiae_contig1457:5180..10372- (Laminarionema elsbetiae ELsaHSoW15)back to top |