mRNA_L-elsbetiae_contig14502.3309.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14502.3309.1
Unique NamemRNA_L-elsbetiae_contig14502.3309.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14502.3309.1 vs. uniprot
Match: D7G7C4_ECTSI (FYVE-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7C4_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 1.160e-54
Identity = 108/152 (71.05%), Postives = 118/152 (77.63%), Query Frame = 1 
Query:  265 DANGSAPGSPASLAAAAAAVTAADVRALAIVGSNGAPSKKKMLDLKLLQSGTSLAVRLKKQAPFTPSPSEFRARERQDLADQPFCGVCAAPFTLMMRRQRCAVCGESVCAQCSSDKRHVEGQKGLQRVCDICIVEGPVVLDENGVYSAGPSP 720
            ++NGSAPGSP SLAAAA A                      + DLKL  SGTS  +RLKKQA FTPSPSEF++RERQD+ DQPFCGVCAAPFTLMMRRQRCAVC +SVCA CSSDKRHVEGQKGLQRVCDICIVEGPVVLDENG+Y+A PSP
Sbjct:    4 NSNGSAPGSPDSLAAAADARX-XXXXXXXXXXXXXXXXXXXVKDLKLRPSGTSRTLRLKKQAQFTPSPSEFKSRERQDVVDQPFCGVCAAPFTLMMRRQRCAVCADSVCAPCSSDKRHVEGQKGLQRVCDICIVEGPVVLDENGMYAASPSP 154
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14502.3309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7C4_ECTSI1.160e-5471.05FYVE-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14502contigL-elsbetiae_contig14502:1514..3837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-04_003330.1
Exons4
Model size1188
Cds size1188
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14502.3309.1prot_L-elsbetiae_contig14502.3309.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14502 1514..3837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.0942879-CDS-L-elsbetiae_contig14502:1513..20181622815582.0942879-CDS-L-elsbetiae_contig14502:1513..2018Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14502 1514..2018 +
1691682972.8557913-CDS-L-elsbetiae_contig14502:1513..20181691682972.8557913-CDS-L-elsbetiae_contig14502:1513..2018Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14502 1514..2018 +
1622815582.108711-CDS-L-elsbetiae_contig14502:2225..23451622815582.108711-CDS-L-elsbetiae_contig14502:2225..2345Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14502 2226..2345 +
1691682972.8645637-CDS-L-elsbetiae_contig14502:2225..23451691682972.8645637-CDS-L-elsbetiae_contig14502:2225..2345Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14502 2226..2345 +
1622815582.1220646-CDS-L-elsbetiae_contig14502:2986..32941622815582.1220646-CDS-L-elsbetiae_contig14502:2986..3294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14502 2987..3294 +
1691682972.8740158-CDS-L-elsbetiae_contig14502:2986..32941691682972.8740158-CDS-L-elsbetiae_contig14502:2986..3294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14502 2987..3294 +
1622815582.1406755-CDS-L-elsbetiae_contig14502:3582..38371622815582.1406755-CDS-L-elsbetiae_contig14502:3582..3837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14502 3583..3837 +
1691682972.884758-CDS-L-elsbetiae_contig14502:3582..38371691682972.884758-CDS-L-elsbetiae_contig14502:3582..3837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14502 3583..3837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14502.3309.1

>prot_L-elsbetiae_contig14502.3309.1 ID=prot_L-elsbetiae_contig14502.3309.1|Name=mRNA_L-elsbetiae_contig14502.3309.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=396bp
VQDSLSKTKQDPSSSSSGGGKDKDKDSSNAPMSGNSSTHSSAERPSSSRI
ASIISGSSNHGGGGGSHNHKASSLFGPLLDMKNGNKDKDANGSAPGSPAS
LAAAAAAVTAADVRALAIVGSNGAPSKKKMLDLKLLQSGTSLAVRLKKQA
PFTPSPSEFRARERQDLADQPFCGVCAAPFTLMMRRQRCAVCGESVCAQC
SSDKRHVEGQKGLQRVCDICIVEGPVVLDENGVYSAGPSPAATPVDGAVV
TAITPVPVAPPVLAPSSSAERSAAAVLKAAAAATSASPSAGTKKSSSSSA
TKSAAAAAAAASPTTTTAKPPRSPAAAAAAAAAAAMATTEKLPPRSPASE
TTFKPPRSPVTVTTVVKGVGTHSTVDGARGGGGGTAKDYFSKAVAA
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mRNA from alignment at L-elsbetiae_contig14502:1514..3837+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14502.3309.1 ID=mRNA_L-elsbetiae_contig14502.3309.1|Name=mRNA_L-elsbetiae_contig14502.3309.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2324bp|location=Sequence derived from alignment at L-elsbetiae_contig14502:1514..3837+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCAAGACTCGCTATCGAAGACCAAGCAAGATCCTTCCTCCTCCTCATC
CGGTGGGGGGAAAGACAAGGACAAGGACAGCAGCAACGCCCCCATGTCGG
GCAACAGCAGCACGCACTCCTCCGCCGAAAGACCGTCCTCCTCGCGAATC
GCAAGCATCATTAGCGGCAGCAGCAACCATGGCGGCGGCGGCGGCTCTCA
CAACCACAAGGCCTCCTCCTTGTTCGGGCCGCTTCTCGACATGAAGAACG
GCAACAAGGACAAGGATGCCAATGGAAGCGCGCCGGGCAGTCCAGCCTCG
CTTGCGGCCGCAGCAGCAGCCGTAACGGCGGCGGATGTCCGGGCTCTCGC
TATTGTCGGGAGCAACGGTGCTCCTTCCAAGAAGAAGATGCTGGACCTAA
AGCTGCTCCAGTCGGGGACGTCTCTGGCGGTGCGGCTCAAGAAACAGGCG
CCGTTCACTCCGTCCCCGTCGGAGTTTAGGGCTCGGGAAAGGCAGGACCT
GGCGGGTGAGTGCTGCTTTAGGGATGCGGAGGCTGGGGCGGGGTGGAAAG
GGTTGCCACATGTCTACGTCGCTGTCTGTGTGCACTCAAACGCCTCCACG
TTGCTAGCGCTGTGTAAATACCCCCGCCCGCGTCCCTGACCGATGTCGCT
CTCCTCCCGTCACTCGTGCCACACCGCTCGGCTCTGCTCCCCCCCCCCCC
TTGCGCCGCCAGACCAACCTTTCTGCGGGGTGTGTGCGGCGCCGTTCACC
CTGATGATGAGGCGTCAGCGCTGCGCCGTGTGCGGAGAGAGCGTCTGCGC
GCAGTGCTCCAGCGACAAGCGCCACGTGGAAGGTGCGACCGTCTGTTTCG
CCTCTTCTCGCTGGCTGCCCTTCACCCTAAAATATGTACTAGAAGTATTT
GTTTAGCGTGGTTTTGTGTCGACAGCGTTCAAAACGCGCGAGAAAATCTC
GTCCACGTTTGATGGAACACCGACATCGGAATTGGCGGGAGAGCTTTCGA
GCGGTGCATCTATCGGCGTTGGTGTCGACAATACTTGTTCGTGTCTTTTT
TTTTTGTCCCAGCAGAGGAAGGGTAGTTTATTTCTCGTCCCAGGGGGGAT
CGTATCTACCAGGTGTTTGTTGACCTTCTACATACGATAGCGAGCGACTT
AATGTTTGTGTTTTTGCCCCCCAAGGCCTTGAAATCGGTCACGGCTTGCT
CCGCGTCCAACCCCTTTTCGGAGGCAACAGCCACTATTAGGTGTATCTTC
TGCGTACAAGCAGGTGTTTGTTTCATTCGGACGATATCGTTCCCACGCCC
TGAATCGACCGCGTCAGTGTTGGGTGGATTAGTACGGACTTCATGGAGGT
ACTGGGTAGAGGGATCGGAACAATTTTGTATGTGAAGACAACAACAACAA
CTACAAAAACACCAACAAAAACACCAGGCACCAACCCTCGCTTCACTCTT
TGCCAACGAATGAACCAACGCAGGCCAGAAGGGCCTGCAAAGGGTGTGCG
ACATCTGCATTGTCGAGGGGCCGGTCGTGCTCGACGAAAACGGGGTGTAC
TCGGCCGGCCCCTCCCCGGCCGCCACGCCCGTCGACGGAGCGGTCGTCAC
CGCCATCACCCCGGTCCCCGTCGCCCCGCCCGTCCTGGCCCCGTCCTCCT
CCGCGGAGCGCTCCGCAGCCGCGGTATTGAAAGCAGCAGCGGCGGCCACA
TCAGCCTCGCCCTCCGCGGGAACGAAGAAGTCTTCCTCCTCCTCCGCCAC
GAAGAGCGCGGCCGCTGCTGCCGCCGCCGCCGTTCGGTCTCTGTTCGCGG
ATTCCCCCCCGACGTCTTCCGCCGCTGCGAAGTCGTCGGGGAAGTCCTCC
GGGAAGTGGTCCGGGAAGTCGTCCGGGAAGTCATACGCCGCCGCTGCCGC
CACCGCTGCCACCGCCACCGCTGCCACCGCCACCGCCGCCGCCGCCGCCG
CGCCGCCGCCTCAAACGAGGACGCCAAGGACCCCCAAGACTCCGATTGAT
ATCGGGGGCAACCACAAGGGTGATCATGGTGGGTCTAGCCAGTCCGCCAT
CTCTTCCCGACCGCCGAAGTCGCCCACGACAACGACCGCCAAGCCTCCAA
GATCGCCCGCAGCGGCGGCAGCGGCAGCGGCAGCGGCAGCGATGGCCACC
ACCGAGAAGCTCCCGCCCAGGTCGCCGGCTTCAGAGACGACCTTCAAGCC
CCCCAGGTCGCCCGTCACCGTGACGACGGTCGTCAAGGGTGTTGGTACCC
ACAGCACCGTCGATGGTGCTCGCGGTGGTGGCGGTGGCACGGCGAAGGAC
TACTTCAGCAAGGCGGTGGCAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14502:1514..3837+

>mRNA_L-elsbetiae_contig14502.3309.1 ID=mRNA_L-elsbetiae_contig14502.3309.1|Name=mRNA_L-elsbetiae_contig14502.3309.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2376bp|location=Sequence derived from alignment at L-elsbetiae_contig14502:1514..3837+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCAAGACTCGCTATCGAAGACCAAGCAAGATCCTTCCTCCTCCTCATC
CGGTGGGGGGAAAGACAAGGACAAGGACAGCAGCAACGCCCCCATGTCGG
GCAACAGCAGCACGCACTCCTCCGCCGAAAGACCGTCCTCCTCGCGAATC
GCAAGCATCATTAGCGGCAGCAGCAACCATGGCGGCGGCGGCGGCTCTCA
CAACCACAAGGCCTCCTCCTTGTTCGGGCCGCTTCTCGACATGAAGAACG
GCAACAAGGACAAGGATGCCAATGGAAGCGCGCCGGGCAGTCCAGCCTCG
CTTGCGGCCGCAGCAGCAGCCGTAACGGCGGCGGATGTCCGGGCTCTCGC
TATTGTCGGGAGCAACGGTGCTCCTTCCAAGAAGAAGATGCTGGACCTAA
AGCTGCTCCAGTCGGGGACGTCTCTGGCGGTGCGGCTCAAGAAACAGGCG
CCGTTCACTCCGTCCCCGTCGGAGTTTAGGGCTCGGGAAAGGCAGGACCT
GGCGGGTCCAAGACTCGCTATCGAAGACCAAGCAAGATCCTTCCTCCTCC
TCATCCGGTGGGGGGAAAGACAAGGACAAGGACAGCAGCAACGCCCCCAT
GTCGGGCAACAGCAGCACGCACTCCTCCGCCGAAAGACCGTCCTCCTCGC
GAATCGCAAGCATCATTAGCGGCAGCAGCAACCATGGCGGCGGCGGCGGC
TCTCACAACCACAAGGCCTCCTCCTTGTTCGGGCCGCTTCTCGACATGAA
GAACGGCAACAAGGACAAGGATGCCAATGGAAGCGCGCCGGGCAGTCCAG
CCTCGCTTGCGGCCGCAGCAGCAGCCGTAACGGCGGCGGATGTCCGGGCT
CTCGCTATTGTCGGGAGCAACGGTGCTCCTTCCAAGAAGAAGATGCTGGA
CCTAAAGCTGCTCCAGTCGGGGACGTCTCTGGCGGTGCGGCTCAAGAAAC
AGGCGCCGTTCACTCCGTCCCCGTCGGAGTTTAGGGCTCGGGAAAGGCAG
GACCTGGCGGACCAACCTTTCTGCGGGGTGTGTGCGGCGCCGTTCACCCT
GATGATGAGGCGTCAGCGCTGCGCCGTGTGCGGAGAGAGCGTCTGCGCGC
AGTGCTCCAGCGACAAGCGCCACGTGGAAGACCAACCTTTCTGCGGGGTG
TGTGCGGCGCCGTTCACCCTGATGATGAGGCGTCAGCGCTGCGCCGTGTG
CGGAGAGAGCGTCTGCGCGCAGTGCTCCAGCGACAAGCGCCACGTGGAAG
GCCAGAAGGGCCTGCAAAGGGTGTGCGACATCTGCATTGTCGAGGGGCCG
GTCGTGCTCGACGAAAACGGGGTGTACTCGGCCGGCCCCTCCCCGGCCGC
CACGCCCGTCGACGGAGCGGTCGTCACCGCCATCACCCCGGTCCCCGTCG
CCCCGCCCGTCCTGGCCCCGTCCTCCTCCGCGGAGCGCTCCGCAGCCGCG
GTATTGAAAGCAGCAGCGGCGGCCACATCAGCCTCGCCCTCCGCGGGAAC
GAAGAAGTCTTCCTCCTCCTCCGCCACGAAGAGCGCGGCCGCTGCTGCCG
CCGCCGCCGCCAGAAGGGCCTGCAAAGGGTGTGCGACATCTGCATTGTCG
AGGGGCCGGTCGTGCTCGACGAAAACGGGGTGTACTCGGCCGGCCCCTCC
CCGGCCGCCACGCCCGTCGACGGAGCGGTCGTCACCGCCATCACCCCGGT
CCCCGTCGCCCCGCCCGTCCTGGCCCCGTCCTCCTCCGCGGAGCGCTCCG
CAGCCGCGGTATTGAAAGCAGCAGCGGCGGCCACATCAGCCTCGCCCTCC
GCGGGAACGAAGAAGTCTTCCTCCTCCTCCGCCACGAAGAGCGCGGCCGC
TGCTGCCGCCGCCGCCTCGCCCACGACAACGACCGCCAAGCCTCCAAGAT
CGCCCGCAGCGGCGGCAGCGGCAGCGGCAGCGGCAGCGATGGCCACCACC
GAGAAGCTCCCGCCCAGGTCGCCGGCTTCAGAGACGACCTTCAAGCCCCC
CAGGTCGCCCGTCACCGTGACGACGGTCGTCAAGGGTGTTGGTACCCACA
GCACCGTCGATGGTGCTCGCGGTGGTGGCGGTGGCACGGCGAAGGACTAC
TTCAGCAAGGCGGTGGCAGCGTCGCCCACGACAACGACCGCCAAGCCTCC
AAGATCGCCCGCAGCGGCGGCAGCGGCAGCGGCAGCGGCAGCGATGGCCA
CCACCGAGAAGCTCCCGCCCAGGTCGCCGGCTTCAGAGACGACCTTCAAG
CCCCCCAGGTCGCCCGTCACCGTGACGACGGTCGTCAAGGGTGTTGGTAC
CCACAGCACCGTCGATGGTGCTCGCGGTGGTGGCGGTGGCACGGCGAAGG
ACTACTTCAGCAAGGCGGTGGCAGCG
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