mRNA_L-elsbetiae_contig14401.3253.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14401.3253.1
Unique NamemRNA_L-elsbetiae_contig14401.3253.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14401.3253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14401contigL-elsbetiae_contig14401:351..2841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size859
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14401.3253.1prot_L-elsbetiae_contig14401.3253.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14401 670..2763 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.7800686-UTR-L-elsbetiae_contig14401:350..6691622815576.7800686-UTR-L-elsbetiae_contig14401:350..669Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14401 351..669 +
1691682969.59047-UTR-L-elsbetiae_contig14401:350..6691691682969.59047-UTR-L-elsbetiae_contig14401:350..669Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14401 351..669 +
1622815576.8301365-UTR-L-elsbetiae_contig14401:2763..28411622815576.8301365-UTR-L-elsbetiae_contig14401:2763..2841Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14401 2764..2841 +
1691682969.6196492-UTR-L-elsbetiae_contig14401:2763..28411691682969.6196492-UTR-L-elsbetiae_contig14401:2763..2841Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14401 2764..2841 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.7995594-CDS-L-elsbetiae_contig14401:669..7671622815576.7995594-CDS-L-elsbetiae_contig14401:669..767Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14401 670..767 +
1691682969.6029747-CDS-L-elsbetiae_contig14401:669..7671691682969.6029747-CDS-L-elsbetiae_contig14401:669..767Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14401 670..767 +
1622815576.8153021-CDS-L-elsbetiae_contig14401:2399..27631622815576.8153021-CDS-L-elsbetiae_contig14401:2399..2763Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14401 2400..2763 +
1691682969.6113966-CDS-L-elsbetiae_contig14401:2399..27631691682969.6113966-CDS-L-elsbetiae_contig14401:2399..2763Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14401 2400..2763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14401.3253.1

>prot_L-elsbetiae_contig14401.3253.1 ID=prot_L-elsbetiae_contig14401.3253.1|Name=mRNA_L-elsbetiae_contig14401.3253.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
MTRGEGLLQLQCRRRGRAIPTESAEQRRRPRYWLSFLAVSSRNYVRRQHS
FCVDEGPPALLISQRPAGTIAGWKTSLYRGHSSGVHESQEQRVTTCRPQA
RAGFPSRQNTRATTKCPTPTPTGEEGSPSVSGRLTGITTAAAATAMPVTG
RQT*
back to top

mRNA from alignment at L-elsbetiae_contig14401:351..2841+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14401.3253.1 ID=mRNA_L-elsbetiae_contig14401.3253.1|Name=mRNA_L-elsbetiae_contig14401.3253.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2491bp|location=Sequence derived from alignment at L-elsbetiae_contig14401:351..2841+ (Laminarionema elsbetiae ELsaHSoW15)
GGTTAGAGCCCGGGGCCAGTCTTTAGTGAAGCGTTCTAATCAGGCATCTG
ACTGTACGAGACAGTATACCGCTAGTGCAAACTATACATATTTTTTTCTT
TATAAACTCAAACCAATGCCTCTTTCCACACATGGTGCTCGTTTTTCTCT
TCGCCTCCACACCAATGTGTTGCGCTCACGGGACACACACAGGTAGACTT
ACCACTACCGTATCTCTCTATTTCCGTGTCCTTGGCTGCCCCTCTACTCC
TGCTGCAAGTACCACTCGTCCGTGGTTGCGCTTCCATCAAGACTTGGAAA
CGCGGAGGCAAGCCCAAGTATGACACGGGGCGAAGGGCTGCTGCAACTGC
AATGCCGGAGGCGCGGGCGGGCGATACCTACAGAGTCAGCCGAACAGCGC
AGACGGCCACGCTACTGGTGAGCTGGTGGGCGTCTTCCCTCCTTGGCCGG
GGGTGAAGCTGTGCTGTTTGTGTTTGGTGCAGCTGCAGCACACATGTATG
TACACACGGCAGCCGCATCATGTGTGCCTGACTCTTCTCAGAGTTTTGTC
TGGAGCTTCCCGGAATACAAGCAATTACAAACCTGGTTGTCGTCCAACTA
GCAAGCCCTGGCCTCAAACGAAGTACCCACTCACACATCACACCTCACAC
CTCACAACTCACGCGCAACGGACTGCCTCCTGCATGCTTCGTCCATATTG
TACCCTGCCCAGCTTTCTTACGCAATATATCACACCCCCCCCCACCAGTA
CAGAAGAGTCAGGCTGAGAGAGTCTCAAAACAGCAACGTATGAGAGAGCT
GGCCCCTCTGCCCCGCCATGGCTTGAAAGATGGGGCCACCGTCGTTGTGG
GGCATGATAGATTCCCCACGTGTTCATTGATAATTTTATCATGAGGGGAC
AGAGGAGCTCGATTTTCCATCGAATCTTGATTTTTTTTTATGTACATATA
GAGTCTATGTATCTATGTATGTAGACTATGTATGTTCTAGTTTAGTAGTA
CAAGATTATGATCAGGGAGGAAGTTACGCGTTACGCGTTACCCATAATTA
CGCGTAATGTCGTTGGGACGACGTACGTAACGTTGGCCATCTGCCGTAAT
GTCCCGTTATGTATTGTGACGGTGCCTCATGGTACCCTCCCTCAGCACCA
GGGGCCCGTCCAAAATTCAAAAGCTCCAGCACACACAGCACACAGCAGAC
CACATCATGAACCAGGAGACCACCATCAACCTTCAGACCCCCAACGGTCT
CCAGGATCGGCCAGCCCTCCTGCAGCTGGTTACGATCACAAAGCAGTCGG
TTGACTAGAGAGTTTCGAGGGCGCCGATTTGCAGGACGTGGGGGCGGAGA
TGTAGATAGCTTTCCTTTTTGCGCTGGCAGCAGCGCTACCCCAGCAGCGG
AGACTATTTATATTGTTCTGTTGTTCTGTTGTTTGCGTTTTGGCGGGGGT
ATGGGGATGCAGGAACAGAGGGGGTGGCTGTGGGGTGCTGGCTAGATGTG
CTGCAAGACTCGAGGAGTTGCAAGCTCACGCACTGTTGCTGTTCTCTAAA
TAACTAAATATCTAGACCTAGACATGTAGATATATCTAGAGAATTGAGAA
TGGAGACTGATACAGTAGTATGTTTTTTTTTCTGAAGTCTATACGCTGCG
CCCTCTACAGGTGTAGGGTATCACACATACGAACGTCACAAGCACATAAC
CCATGCAGTTGCAGTGAAGAGGGCAGCGCTCAATAACCGACAACTACATT
TTCATACAGCATACACACACCACCTGACACAAACAGCTGTACACAAACAA
ACGCGAAAGAGCAAGAACTATGCCAGGCACAGAACTGCCAGGGATGGAGT
AACACAGCTAGGCACAGACCCCCAGGGGATGGTCCACTTTCGTACCCCCA
GCGGTAGCCGTAATTACGGGGACGTAACGTCAAAGGCCTGATTTGCCGTA
ATTACGGGGCCGTAACGTGGACAATCTGCCGTAACTTCCATCCCTGATTA
TGATTCACATTTCTCCCCCCCCCGTGTCTCTTTCTCGTCACACCCGAAGG
CTAAGCTTTCTGGCTGTTTCATCCAGAAACTATGTACGAAGGCAGCATTC
CTTCTGTGTTGATGAAGGTCCCCCTGCTCTGTTGATTTCCCAGCGCCCAG
CAGGGACCATCGCTGGATGGAAGACGAGCCTTTACCGCGGCCACAGCAGC
GGTGTACACGAGTCACAGGAGCAGCGTGTCACCACCTGTCGTCCTCAGGC
TCGTGCCGGATTCCCATCCCGACAGAACACCCGCGCCACCACAAAATGTC
CGACTCCAACCCCGACGGGGGAAGAGGGCTCGCCTTCGGTTTCGGGCCGC
CTCACGGGCATCACAACAGCAGCAGCAGCAACAGCCATGCCGGTGACCGG
GCGGCAGACGTAGGGGGAGGCGGCGGCGGCGCTGGGGTTGGCAGCGGCTG
CGGCAGTGGTTACGGCGGCAACACGCATTGGAAATGGGCTC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14401:351..2841+

>mRNA_L-elsbetiae_contig14401.3253.1 ID=mRNA_L-elsbetiae_contig14401.3253.1|Name=mRNA_L-elsbetiae_contig14401.3253.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig14401:351..2841+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACACGGGGCGAAGGGCTGCTGCAACTGCAATGCCGGAGGCGCGGGCG
GGCGATACCTACAGAGTCAGCCGAACAGCGCAGACGGCCACGCTACTGAT
GACACGGGGCGAAGGGCTGCTGCAACTGCAATGCCGGAGGCGCGGGCGGG
CGATACCTACAGAGTCAGCCGAACAGCGCAGACGGCCACGCTACTGGCTA
AGCTTTCTGGCTGTTTCATCCAGAAACTATGTACGAAGGCAGCATTCCTT
CTGTGTTGATGAAGGTCCCCCTGCTCTGTTGATTTCCCAGCGCCCAGCAG
GGACCATCGCTGGATGGAAGACGAGCCTTTACCGCGGCCACAGCAGCGGT
GTACACGAGTCACAGGAGCAGCGTGTCACCACCTGTCGTCCTCAGGCTCG
TGCCGGATTCCCATCCCGACAGAACACCCGCGCCACCACAAAATGTCCGA
CTCCAACCCCGACGGGGGAAGAGGGCTCGCCTTCGGTTTCGGGCCGCCTC
ACGGGCATCACAACAGCAGCAGCAGCAACAGCCATGCCGGTGACCGGGCG
GCAGACGTAGGCTAAGCTTTCTGGCTGTTTCATCCAGAAACTATGTACGA
AGGCAGCATTCCTTCTGTGTTGATGAAGGTCCCCCTGCTCTGTTGATTTC
CCAGCGCCCAGCAGGGACCATCGCTGGATGGAAGACGAGCCTTTACCGCG
GCCACAGCAGCGGTGTACACGAGTCACAGGAGCAGCGTGTCACCACCTGT
CGTCCTCAGGCTCGTGCCGGATTCCCATCCCGACAGAACACCCGCGCCAC
CACAAAATGTCCGACTCCAACCCCGACGGGGGAAGAGGGCTCGCCTTCGG
TTTCGGGCCGCCTCACGGGCATCACAACAGCAGCAGCAGCAACAGCCATG
CCGGTGACCGGGCGGCAGACGTAG
back to top