mRNA_L-elsbetiae_contig14349.3213.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14349.3213.1
Unique NamemRNA_L-elsbetiae_contig14349.3213.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14349.3213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14349contigL-elsbetiae_contig14349:307..771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size465
Cds size342
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.5362058-UTR-L-elsbetiae_contig14349:306..4291622815573.5362058-UTR-L-elsbetiae_contig14349:306..429Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14349 307..429 +
1691682967.7337055-UTR-L-elsbetiae_contig14349:306..4291691682967.7337055-UTR-L-elsbetiae_contig14349:306..429Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14349 307..429 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.548434-CDS-L-elsbetiae_contig14349:429..7711622815573.548434-CDS-L-elsbetiae_contig14349:429..771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14349 430..771 +
1691682967.7445164-CDS-L-elsbetiae_contig14349:429..7711691682967.7445164-CDS-L-elsbetiae_contig14349:429..771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14349 430..771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14349.3213.1prot_L-elsbetiae_contig14349.3213.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14349 430..771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14349.3213.1

>prot_L-elsbetiae_contig14349.3213.1 ID=prot_L-elsbetiae_contig14349.3213.1|Name=mRNA_L-elsbetiae_contig14349.3213.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MATQSRAADGSAAKRMTRGTAAAAAATAAVESVNVACKTAGVVGGGGAAV
CGTRGSKRPGYSPIGVILTTDGSSSSSAILLGASTAEPNPVFLMGCVRSG
WICIRDVDLGGGL*
back to top

mRNA from alignment at L-elsbetiae_contig14349:307..771+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14349.3213.1 ID=mRNA_L-elsbetiae_contig14349.3213.1|Name=mRNA_L-elsbetiae_contig14349.3213.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=465bp|location=Sequence derived from alignment at L-elsbetiae_contig14349:307..771+ (Laminarionema elsbetiae ELsaHSoW15)
TGTCCGAAAACTTGTCGTTTGGTGTTGGCCACTGCTGTCTTCGTCGTCGA
GTAATCGAGCTTTGAAAATCCGTCCGGGGGGGGGTGGTATCTCGTGTCAT
CTACGGTAGTACACTGCTGGTGTATGGCGACACAAAGTAGAGCAGCAGAT
GGCTCTGCTGCTAAAAGGATGACCCGAGGTACTGCAGCAGCAGCAGCAGC
AACAGCAGCAGTTGAGAGTGTGAATGTGGCATGTAAGACAGCGGGAGTTG
TTGGGGGCGGAGGTGCTGCTGTCTGTGGCACGCGCGGTTCCAAACGGCCG
GGTTATAGCCCAATCGGTGTGATCTTGACAACAGACGGTAGTAGTAGTAG
TAGTGCCATTTTGCTGGGGGCATCTACTGCCGAGCCCAACCCGGTGTTTC
TGATGGGCTGCGTGCGGAGTGGGTGGATTTGTATTCGGGACGTCGATTTG
GGGGGGGGGTTGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14349:307..771+

>mRNA_L-elsbetiae_contig14349.3213.1 ID=mRNA_L-elsbetiae_contig14349.3213.1|Name=mRNA_L-elsbetiae_contig14349.3213.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig14349:307..771+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGACACAAAGTAGAGCAGCAGATGGCTCTGCTGCTAAAAGGATGAC
CCGAGGTACTGCAGCAGCAGCAGCAGCAACAGCAGCAGTTGAGAGTGTGA
ATGTGGCATGTAAGACAGCGGGAGTTGTTGGGGGCGGAGGTGCTGCTGTC
TGTGGCACGCGCGGTTCCAAACGGCCGGGTTATAGCCCAATCGGTGTGAT
CTTGACAACAGACGGTAGTAGTAGTAGTAGTGCCATTTTGCTGGGGGCAT
CTACTGCCGAGCCCAACCCGGTGTTTCTGATGGGCTGCGTGCGGAGTGGG
TGGATTTGTATTCGGGACGTCGATTTGGGGGGGGGGTTGTGAATGGCGAC
ACAAAGTAGAGCAGCAGATGGCTCTGCTGCTAAAAGGATGACCCGAGGTA
CTGCAGCAGCAGCAGCAGCAACAGCAGCAGTTGAGAGTGTGAATGTGGCA
TGTAAGACAGCGGGAGTTGTTGGGGGCGGAGGTGCTGCTGTCTGTGGCAC
GCGCGGTTCCAAACGGCCGGGTTATAGCCCAATCGGTGTGATCTTGACAA
CAGACGGTAGTAGTAGTAGTAGTGCCATTTTGCTGGGGGCATCTACTGCC
GAGCCCAACCCGGTGTTTCTGATGGGCTGCGTGCGGAGTGGGTGGATTTG
TATTCGGGACGTCGATTTGGGGGGGGGGTTGTGA
back to top