mRNA_L-elsbetiae_contig14348.3212.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14348.3212.1
Unique NamemRNA_L-elsbetiae_contig14348.3212.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14348.3212.1 vs. uniprot
Match: D7FQS8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQS8_ECTSI)

HSP 1 Score: 311 bits (796), Expect = 1.140e-96
Identity = 149/180 (82.78%), Postives = 163/180 (90.56%), Query Frame = 1 
Query:    1 IVGVGGIEAKKAAAIEREKEWQELLRNRAATALQRQYHVRASRKKRALLRWKWDVEKAKAKTRGTSLLATRIQSWWRGLRAKWLALQLLQITVEVLWDPGTNQPYYFNHGLGQATWEVPSMLRRWRGEGARMPSVPEWVFISRIFGQSYFYNTRSRLREDEKPAGYIRCSSCQTQLASRR 540
            IVG+ GIEAKK A  +REKEW+ELLRNRAAT +QRQYH  A+RK+RALLRWKWDVEKA+AK R T+L+ATRIQ WWR LRAKWLALQLLQIT+EVLWDPG NQ YYFNHGL QA WEVPSMLRRWRG GA+MPSVPEWV ISR+FGQSYFYNTRSRLR+DEKPAGY+RCSSCQTQLASRR
Sbjct:  621 IVGLEGIEAKKRAVEDREKEWEELLRNRAATTMQRQYHAWAARKRRALLRWKWDVEKARAKNRETTLMATRIQCWWRILRAKWLALQLLQITIEVLWDPGLNQQYYFNHGLEQAAWEVPSMLRRWRGRGAKMPSVPEWVLISRLFGQSYFYNTRSRLRQDEKPAGYLRCSSCQTQLASRR 800
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14348.3212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQS8_ECTSI1.140e-9682.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14348contigL-elsbetiae_contig14348:1374..4160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.9
Seed ortholog evalue7.7e-83
Seed eggNOG ortholog2880.D7FQS8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.EF-hand, calcium binding motif
EggNOG OGs2CJ0G@1,2SKVK@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size871
Cds size870
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14348.3212.1prot_L-elsbetiae_contig14348.3212.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14348 1374..4159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.465397-CDS-L-elsbetiae_contig14348:1373..14561622815573.465397-CDS-L-elsbetiae_contig14348:1373..1456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14348 1374..1456 +
1691682967.688439-CDS-L-elsbetiae_contig14348:1373..14561691682967.688439-CDS-L-elsbetiae_contig14348:1373..1456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14348 1374..1456 +
1622815573.4771621-CDS-L-elsbetiae_contig14348:2081..24391622815573.4771621-CDS-L-elsbetiae_contig14348:2081..2439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14348 2082..2439 +
1691682967.7041507-CDS-L-elsbetiae_contig14348:2081..24391691682967.7041507-CDS-L-elsbetiae_contig14348:2081..2439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14348 2082..2439 +
1622815573.4888947-CDS-L-elsbetiae_contig14348:3125..32231622815573.4888947-CDS-L-elsbetiae_contig14348:3125..3223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14348 3126..3223 +
1691682967.7136767-CDS-L-elsbetiae_contig14348:3125..32231691682967.7136767-CDS-L-elsbetiae_contig14348:3125..3223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14348 3126..3223 +
1622815573.5025983-CDS-L-elsbetiae_contig14348:3828..41591622815573.5025983-CDS-L-elsbetiae_contig14348:3828..4159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14348 3829..4159 +
1691682967.723649-CDS-L-elsbetiae_contig14348:3828..41591691682967.723649-CDS-L-elsbetiae_contig14348:3828..4159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14348 3829..4159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14348.3212.1

>prot_L-elsbetiae_contig14348.3212.1 ID=prot_L-elsbetiae_contig14348.3212.1|Name=mRNA_L-elsbetiae_contig14348.3212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=290bp
IVGVGGIEAKKAAAIEREKEWQELLRNRAATALQRQYHVRASRKKRALLR
WKWDVEKAKAKTRGTSLLATRIQSWWRGLRAKWLALQLLQITVEVLWDPG
TNQPYYFNHGLGQATWEVPSMLRRWRGEGARMPSVPEWVFISRIFGQSYF
YNTRSRLREDEKPAGYIRCSSCQTQLASRRCTVEERDLCFVCYRNEHIEG
EERVWHDWETSKAYTCRICAQRDATVVCPDCTDKDHSQNKNRRTKPGGRH
GKGGATGGGGGGGGSDSDSGGIVLCDACWGRTHAHAGARH
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mRNA from alignment at L-elsbetiae_contig14348:1374..4160+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14348.3212.1 ID=mRNA_L-elsbetiae_contig14348.3212.1|Name=mRNA_L-elsbetiae_contig14348.3212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2787bp|location=Sequence derived from alignment at L-elsbetiae_contig14348:1374..4160+ (Laminarionema elsbetiae ELsaHSoW15)
ATCGTGGGCGTAGGGGGCATCGAGGCCAAGAAGGCGGCGGCAATAGAGCG
GGAGAAGGAGTGGCAAGAGCTTCTCAGGAACAGGTGCGTGGTTGTGCTGC
CGGGGTTGTGTCGTTGCTGCTGCTGCTACCCTCGCCGTGAAATGACAACG
TTTCGGTCTCTGCTCAGCACCGCGCAGCAGTTGAATCGGACCACCCTTCG
CCAAAAGATAAATGTGAATGAGCGGAAACGTCTCTCGGTTACTTGCGTGT
CTCGGGTAAGCCACACTGACTGTGGCTTGCCCCCGTACATGTCCACCGAT
CTTAGATCACCTGGTTGTCTGTCTCGGCCTTTGCTTCCCGTTCTTCCACC
AAGACGCCTTAGATCGAGGGGCAACTTTTTATGGCAAACCCGTCTCAGCT
TATGCAGTTTTGTCTCAACCAAAACAAGTATGCAGACTTGCCGTGACTTC
GTTCTGTCTCGATCATATTCCCCCCGCTCGGGCCTTAACCTGACTTTTTC
GATGGCCTGATCGCTAAAAACCTGACCACAAAACTATGGCCACGAAAAAT
GTTAAATTAAAAAAAAACTTTGAAAAGATAAACAGAAAAAATCTAAAAAC
AATTTATTTCGAAAAAAATCGCAACCAAGTGATGAGTACGCCCCCTCGCC
CCCCCTCCCTCCCCGCAAAAACCGCGCGGCGCCCCTCCTCCTTCCTTTGT
GCGGCCAGGGCCGCGACGGCCCTGCAGCGGCAATACCACGTGCGGGCCTC
TCGCAAGAAGAGGGCCCTCCTGCGCTGGAAGTGGGACGTAGAGAAGGCCA
AGGCTAAGACCCGCGGGACCAGCCTCCTGGCGACTCGTATCCAGAGCTGG
TGGAGAGGCCTGCGCGCCAAGTGGCTCGCCCTCCAGCTGTTGCAGATCAC
GGTGGAGGTACTGTGGGACCCCGGAACCAACCAGCCCTACTACTTCAACC
ACGGGCTGGGCCAGGCGACTTGGGAGGTGCCGAGCATGCTGCGGCGGTGG
CGCGGGGAGGGCGCCAGGATGCCGAGCGTGCCGGAGTGGGTGTTTATCTC
CAGGATTTTCGGTCAGGTGGGAACGAGCACCCGTGGGCTCGTGTGGCCGA
CCGTTTAGTGCCCGGGGATTGAGTCGATTTTCGGCACCAGGCGCGTCAGG
ACCGGTGGTCTGACGCCCGGTTACTCGACTTAGGGTCGGTGGTCTGACGG
CCGGTTCCTCGACGCCAGTGGAGATCGTCGGCTCGACTTTGTGGGGATTT
CTTGAATTTGTTTTCAGAGAATCAAAGAGAGAACCTCCCCGCGAAATAAA
CCGCTGTCTCTTTGTGTTGAAATTAATCATTCCATACAGTGATGTAGTAT
AGGTAATCCGGCCGAGTAGAAAAACACCTAATTTTTGTTTCGAAAAATCT
CGCCCTTTTTTTAAGTTTTTTTTTGTAAAAATCGCTACCGTGAGCAGCCC
GAGCGAAGAAAACGAGCCCGTTCCGTCCCGGTATTATTGGCGATGACATT
TCCGTGGTCGAAGACCGAGGGGAAAAAACCAGCCGCCGCTCTGCTGCAGA
ATTGTGCTGCGCAATCACAACTACGTCTACGGGTTCGCGTAGGCACGGGT
AGGAAAGGGCTGCATGGCGTTGTCTTTGGTCCACATCGCCCCCCCGGCAC
AGCCTACTAGCGAGTGGCACAGCTGACAGACTACCCCTTCCCCCTTCCAA
AAAAATAACCATGCGTCCAAATCTCTCCAACGCTATCGACAAACAAACGC
AGTCTTATTTTTACAACACCCGGAGCCGGTTGCGGGAAGATGAAAAGCCG
GCAGGCTACATACGATGCTCCTCGTGCCAAACGCAGCTCGCCAGCCGCAG
GTGCGTGGCGCCTGGGGTACTAATGTAGAATGTTGTAGGAAAACAAACTC
CCTCTTGCCTTGTTCTCCGTACGCTCCCGTTTTGTGCCCGTCTTTAGGTG
CCGGCCTCCTCAGCGCAAAAGCACCCACCACTCCACCCGAGATCGATGAA
GTTCCAGATACTCAGAAGAGATAATAGCGCTTGTCGCTTTCAAACATGAC
CATGTGTAAAAACATCTAAGGCAGGCACCGCAGGAAGGGGTCCACCCCCC
CCCTCCTGTGTGACCCCGGTTGGGTCGTCTAGCTAGTCGTCGTGGAGGAA
GGGGGCCAGTGGGGCAGACGACGAACAAGCCAATAATGGGAGGAAGAAAA
ACAAAACGAGGTTAACTCTGCTCGAAAACAGTGCGGATACGCATGTAGCA
CCCGGAAGAGTATCCAGGTTCATACGAGTGGGCAATACTGGTGTGGGAGT
AGACAACAGCAGCACTACATACAGAGTACATACAAGTAACGGTTGTGACG
TTATATAGAAGTAGAACCTTACTGACCGTACGATACTCCTTAATTTGTTG
TGTTTGGTTTGTTGTGGCTACAACTGCTGCTGCTGCTGCTGCTGTAACAA
ACAAGGTGCACCGTCGAGGAGCGAGACTTGTGCTTCGTCTGCTACCGGAA
CGAGCACATCGAGGGGGAGGAACGCGTCTGGCACGACTGGGAGACGTCCA
AGGCCTACACGTGCCGTATCTGCGCCCAGCGCGACGCCACCGTCGTGTGC
CCCGACTGCACCGACAAGGACCACTCGCAGAACAAGAACAGGAGAACGAA
ACCCGGCGGCCGCCACGGGAAAGGAGGAGCGACCGGCGGCGGCGGCGGCG
GCGGCGGCAGTGACAGCGACAGCGGCGGGATCGTGCTCTGCGATGCTTGT
TGGGGGAGGACACACGCCCACGCGGGCGCTCGGCACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14348:1374..4160+

>mRNA_L-elsbetiae_contig14348.3212.1 ID=mRNA_L-elsbetiae_contig14348.3212.1|Name=mRNA_L-elsbetiae_contig14348.3212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1740bp|location=Sequence derived from alignment at L-elsbetiae_contig14348:1374..4160+ (Laminarionema elsbetiae ELsaHSoW15)
ATCGTGGGCGTAGGGGGCATCGAGGCCAAGAAGGCGGCGGCAATAGAGCG
GGAGAAGGAGTGGCAAGAGCTTCTCAGGAACAGATCGTGGGCGTAGGGGG
CATCGAGGCCAAGAAGGCGGCGGCAATAGAGCGGGAGAAGGAGTGGCAAG
AGCTTCTCAGGAACAGGGCCGCGACGGCCCTGCAGCGGCAATACCACGTG
CGGGCCTCTCGCAAGAAGAGGGCCCTCCTGCGCTGGAAGTGGGACGTAGA
GAAGGCCAAGGCTAAGACCCGCGGGACCAGCCTCCTGGCGACTCGTATCC
AGAGCTGGTGGAGAGGCCTGCGCGCCAAGTGGCTCGCCCTCCAGCTGTTG
CAGATCACGGTGGAGGTACTGTGGGACCCCGGAACCAACCAGCCCTACTA
CTTCAACCACGGGCTGGGCCAGGCGACTTGGGAGGTGCCGAGCATGCTGC
GGCGGTGGCGCGGGGAGGGCGCCAGGATGCCGAGCGTGCCGGAGTGGGTG
TTTATCTCCAGGATTTTCGGTCAGGGCCGCGACGGCCCTGCAGCGGCAAT
ACCACGTGCGGGCCTCTCGCAAGAAGAGGGCCCTCCTGCGCTGGAAGTGG
GACGTAGAGAAGGCCAAGGCTAAGACCCGCGGGACCAGCCTCCTGGCGAC
TCGTATCCAGAGCTGGTGGAGAGGCCTGCGCGCCAAGTGGCTCGCCCTCC
AGCTGTTGCAGATCACGGTGGAGGTACTGTGGGACCCCGGAACCAACCAG
CCCTACTACTTCAACCACGGGCTGGGCCAGGCGACTTGGGAGGTGCCGAG
CATGCTGCGGCGGTGGCGCGGGGAGGGCGCCAGGATGCCGAGCGTGCCGG
AGTGGGTGTTTATCTCCAGGATTTTCGGTCAGTCTTATTTTTACAACACC
CGGAGCCGGTTGCGGGAAGATGAAAAGCCGGCAGGCTACATACGATGCTC
CTCGTGCCAAACGCAGCTCGCCAGCCGCAGTCTTATTTTTACAACACCCG
GAGCCGGTTGCGGGAAGATGAAAAGCCGGCAGGCTACATACGATGCTCCT
CGTGCCAAACGCAGCTCGCCAGCCGCAGGTGCACCGTCGAGGAGCGAGAC
TTGTGCTTCGTCTGCTACCGGAACGAGCACATCGAGGGGGAGGAACGCGT
CTGGCACGACTGGGAGACGTCCAAGGCCTACACGTGCCGTATCTGCGCCC
AGCGCGACGCCACCGTCGTGTGCCCCGACTGCACCGACAAGGACCACTCG
CAGAACAAGAACAGGAGAACGAAACCCGGCGGCCGCCACGGGAAAGGAGG
AGCGACCGGCGGCGGCGGCGGCGGCGGCGGCAGTGACAGCGACAGCGGCG
GGATCGTGCTCTGCGATGCTTGTTGGGGGAGGACACACGCCCACGCGGGC
GCTCGGCACGTGCACCGTCGAGGAGCGAGACTTGTGCTTCGTCTGCTACC
GGAACGAGCACATCGAGGGGGAGGAACGCGTCTGGCACGACTGGGAGACG
TCCAAGGCCTACACGTGCCGTATCTGCGCCCAGCGCGACGCCACCGTCGT
GTGCCCCGACTGCACCGACAAGGACCACTCGCAGAACAAGAACAGGAGAA
CGAAACCCGGCGGCCGCCACGGGAAAGGAGGAGCGACCGGCGGCGGCGGC
GGCGGCGGCGGCAGTGACAGCGACAGCGGCGGGATCGTGCTCTGCGATGC
TTGTTGGGGGAGGACACACGCCCACGCGGGCGCTCGGCAC
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