mRNA_L-elsbetiae_contig14265.3161.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14265.3161.1
Unique NamemRNA_L-elsbetiae_contig14265.3161.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14265.3161.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 3.220e-26
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 GVVRMENLDAASRQLARNAAYGKHGPGVCTAAAAHSKFIAVGTSRGLILLFDHFQ 165
            GVVRMENLDAASRQLARNAAYGKHGPGVCTA AAHSKFIAVGTSRGLILLFDHFQ
Sbjct:  408 GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 462
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BLAST of mRNA_L-elsbetiae_contig14265.3161.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 3.220e-26
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 GVVRMENLDAASRQLARNAAYGKHGPGVCTAAAAHSKFIAVGTSRGLILLFDHFQ 165
            GVVRMENLDAASRQLARNAAYGKHGPGVCTA AAHSKFIAVGTSRGLILLFDHFQ
Sbjct:  377 GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 431
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BLAST of mRNA_L-elsbetiae_contig14265.3161.1 vs. uniprot
Match: A0A8K1FDH6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDH6_PYTOL)

HSP 1 Score: 70.9 bits (172), Expect = 5.910e-13
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 GVVRMENLDAASRQLARNAAYGKHGPGVCTAAAAHSKFIAVGTSRGLILLFDHFQ 165
            GVV++E ++  SRQL +N  + +HGPG  T  A HSKFIA+GTS+GL+L+FDHFQ
Sbjct:  190 GVVKVEAMETISRQLKKNIEFKEHGPGSPTVVAIHSKFIAIGTSKGLVLIFDHFQ 244
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BLAST of mRNA_L-elsbetiae_contig14265.3161.1 vs. uniprot
Match: A0A2P4XRT3_9STRA (Vacuolar protein sorting-associated protein 8 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRT3_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.520e-12
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 GVVRMENLDAASRQLARNAAYGKHGPGVCTAAAAHSKFIAVGTSRGLILLFDHFQ 165
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  166 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 220
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BLAST of mRNA_L-elsbetiae_contig14265.3161.1 vs. uniprot
Match: A0A0W8DEQ5_PHYNI (Phosphatidylinositol transfer protein beta isoform n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DEQ5_PHYNI)

HSP 1 Score: 69.3 bits (168), Expect = 2.040e-12
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 GVVRMENLDAASRQLARNAAYGKHGPGVCTAAAAHSKFIAVGTSRGLILLFDHFQ 165
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  149 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 203
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BLAST of mRNA_L-elsbetiae_contig14265.3161.1 vs. uniprot
Match: A0A2P4Y7R6_9STRA (Glucosidase 2 subunit beta (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y7R6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.060e-12
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 GVVRMENLDAASRQLARNAAYGKHGPGVCTAAAAHSKFIAVGTSRGLILLFDHFQ 165
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  690 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 744
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BLAST of mRNA_L-elsbetiae_contig14265.3161.1 vs. uniprot
Match: A0A0P1AJW9_PLAHL (Vacuolar assembly/sorting protein VPS8 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJW9_PLAHL)

HSP 1 Score: 69.3 bits (168), Expect = 2.060e-12
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 GVVRMENLDAASRQLARNAAYGKHGPGVCTAAAAHSKFIAVGTSRGLILLFDHFQ 165
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  165 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 219
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BLAST of mRNA_L-elsbetiae_contig14265.3161.1 vs. uniprot
Match: A0A484E0X2_BRELC (Vps8 domain-containing protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A484E0X2_BRELC)

HSP 1 Score: 69.3 bits (168), Expect = 2.060e-12
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 GVVRMENLDAASRQLARNAAYGKHGPGVCTAAAAHSKFIAVGTSRGLILLFDHFQ 165
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  163 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 217
[Close]
BLAST of mRNA_L-elsbetiae_contig14265.3161.1 vs. uniprot
Match: G4Z679_PHYSP (Vps8 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z679_PHYSP)

HSP 1 Score: 69.3 bits (168), Expect = 2.060e-12
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 GVVRMENLDAASRQLARNAAYGKHGPGVCTAAAAHSKFIAVGTSRGLILLFDHFQ 165
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  150 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 204
[Close]
BLAST of mRNA_L-elsbetiae_contig14265.3161.1 vs. uniprot
Match: A0A662WX84_9STRA (Chromo domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WX84_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.060e-12
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 GVVRMENLDAASRQLARNAAYGKHGPGVCTAAAAHSKFIAVGTSRGLILLFDHFQ 165
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  478 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 532
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14265.3161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRX0_ECTSI3.220e-2698.18Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JMF4_9PHAE3.220e-2698.18Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A8K1FDH6_PYTOL5.910e-1358.18Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P4XRT3_9STRA1.520e-1256.36Vacuolar protein sorting-associated protein 8 n=1 ... [more]
A0A0W8DEQ5_PHYNI2.040e-1256.36Phosphatidylinositol transfer protein beta isoform... [more]
A0A2P4Y7R6_9STRA2.060e-1256.36Glucosidase 2 subunit beta (Fragment) n=1 Tax=Phyt... [more]
A0A0P1AJW9_PLAHL2.060e-1256.36Vacuolar assembly/sorting protein VPS8 n=1 Tax=Pla... [more]
A0A484E0X2_BRELC2.060e-1256.36Vps8 domain-containing protein n=2 Tax=Peronospora... [more]
G4Z679_PHYSP2.060e-1256.36Vps8 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A662WX84_9STRA2.060e-1256.36Chromo domain-containing protein n=2 Tax=Nothophyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14265contigL-elsbetiae_contig14265:4282..4446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue1.1e-19
Seed eggNOG ortholog2880.D8LRX0
KEGG koko:K20178
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0006810,GO:0006886,GO:0006906,GO:0006996,GO:0007034,GO:0008104,GO:0008150,GO:0008270,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0033263,GO:0034058,GO:0034613,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046872,GO:0046907,GO:0046914,GO:0048284,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097708,GO:0099023
EggNOG free text desc.endosomal vesicle fusion
EggNOG OGsKOG2079@1,KOG2079@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size165
Cds size153
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.5393467-UTR-L-elsbetiae_contig14265:4281..42931622815569.5393467-UTR-L-elsbetiae_contig14265:4281..4293Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14265 4282..4293 +
1691682965.3810577-UTR-L-elsbetiae_contig14265:4281..42931691682965.3810577-UTR-L-elsbetiae_contig14265:4281..4293Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14265 4282..4293 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.5498164-CDS-L-elsbetiae_contig14265:4293..44461622815569.5498164-CDS-L-elsbetiae_contig14265:4293..4446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14265 4294..4446 +
1691682965.3950396-CDS-L-elsbetiae_contig14265:4293..44461691682965.3950396-CDS-L-elsbetiae_contig14265:4293..4446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14265 4294..4446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14265.3161.1prot_L-elsbetiae_contig14265.3161.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14265 4294..4446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14265.3161.1

>prot_L-elsbetiae_contig14265.3161.1 ID=prot_L-elsbetiae_contig14265.3161.1|Name=mRNA_L-elsbetiae_contig14265.3161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=51bp
MENLDAASRQLARNAAYGKHGPGVCTAAAAHSKFIAVGTSRGLILLFDHF
Q
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mRNA from alignment at L-elsbetiae_contig14265:4282..4446+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14265.3161.1 ID=mRNA_L-elsbetiae_contig14265.3161.1|Name=mRNA_L-elsbetiae_contig14265.3161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=165bp|location=Sequence derived from alignment at L-elsbetiae_contig14265:4282..4446+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGTCGTGCGGATGGAGAACCTGGACGCGGCGTCGCGGCAGCTGGCGAG
GAACGCGGCGTACGGCAAGCACGGGCCGGGGGTTTGCACGGCGGCGGCGG
CGCACTCCAAGTTTATCGCCGTAGGGACGTCGAGAGGGCTCATCCTGCTC
TTCGACCACTTCCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14265:4282..4446+

>mRNA_L-elsbetiae_contig14265.3161.1 ID=mRNA_L-elsbetiae_contig14265.3161.1|Name=mRNA_L-elsbetiae_contig14265.3161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=306bp|location=Sequence derived from alignment at L-elsbetiae_contig14265:4282..4446+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGAACCTGGACGCGGCGTCGCGGCAGCTGGCGAGGAACGCGGCGTA
CGGCAAGCACGGGCCGGGGGTTTGCACGGCGGCGGCGGCGCACTCCAAGT
TTATCGCCGTAGGGACGTCGAGAGGGCTCATCCTGCTCTTCGACCACTTC
CAGATGGAGAACCTGGACGCGGCGTCGCGGCAGCTGGCGAGGAACGCGGC
GTACGGCAAGCACGGGCCGGGGGTTTGCACGGCGGCGGCGGCGCACTCCA
AGTTTATCGCCGTAGGGACGTCGAGAGGGCTCATCCTGCTCTTCGACCAC
TTCCAG
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