mRNA_L-elsbetiae_contig14126.3075.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14126.3075.1
Unique NamemRNA_L-elsbetiae_contig14126.3075.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14126.3075.1 vs. uniprot
Match: A0A6H5KL36_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL36_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.200e-6
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    1 LYPPETAVGAARCSPQKGRRASTPAHDPVPALSTRRSSDSTVGIADSPRMLPDGLKTDE 177
            ++PP   V  A   P KG+ +        P+L TRRSS STVGIADSP+MLP+GLKTDE
Sbjct:   23 VWPP---VVVASAFPLKGQGS-------APSLVTRRSSGSTVGIADSPQMLPEGLKTDE 71
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14126.3075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KL36_9PHAE3.200e-654.24Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14126contigL-elsbetiae_contig14126:3359..3535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.4113863-CDS-L-elsbetiae_contig14126:3358..35351622815561.4113863-CDS-L-elsbetiae_contig14126:3358..3535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14126 3359..3535 +
1691682960.5520854-CDS-L-elsbetiae_contig14126:3358..35351691682960.5520854-CDS-L-elsbetiae_contig14126:3358..3535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14126 3359..3535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14126.3075.1prot_L-elsbetiae_contig14126.3075.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14126 3359..3535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14126.3075.1

>prot_L-elsbetiae_contig14126.3075.1 ID=prot_L-elsbetiae_contig14126.3075.1|Name=mRNA_L-elsbetiae_contig14126.3075.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=59bp
LYPPETAVGAARCSPQKGRRASTPAHDPVPALSTRRSSDSTVGIADSPRM
LPDGLKTDE
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mRNA from alignment at L-elsbetiae_contig14126:3359..3535+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14126.3075.1 ID=mRNA_L-elsbetiae_contig14126.3075.1|Name=mRNA_L-elsbetiae_contig14126.3075.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=177bp|location=Sequence derived from alignment at L-elsbetiae_contig14126:3359..3535+ (Laminarionema elsbetiae ELsaHSoW15)
CTGTACCCGCCGGAAACAGCAGTCGGGGCCGCCCGCTGCTCTCCGCAGAA
GGGGCGGCGGGCATCCACTCCTGCCCACGACCCGGTCCCGGCCCTCAGCA
CCCGCCGTTCCTCTGACTCAACGGTGGGGATCGCCGACTCGCCGCGGATG
CTCCCGGACGGCCTCAAGACGGACGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14126:3359..3535+

>mRNA_L-elsbetiae_contig14126.3075.1 ID=mRNA_L-elsbetiae_contig14126.3075.1|Name=mRNA_L-elsbetiae_contig14126.3075.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig14126:3359..3535+ (Laminarionema elsbetiae ELsaHSoW15)
CTGTACCCGCCGGAAACAGCAGTCGGGGCCGCCCGCTGCTCTCCGCAGAA
GGGGCGGCGGGCATCCACTCCTGCCCACGACCCGGTCCCGGCCCTCAGCA
CCCGCCGTTCCTCTGACTCAACGGTGGGGATCGCCGACTCGCCGCGGATG
CTCCCGGACGGCCTCAAGACGGACGAGCTGTACCCGCCGGAAACAGCAGT
CGGGGCCGCCCGCTGCTCTCCGCAGAAGGGGCGGCGGGCATCCACTCCTG
CCCACGACCCGGTCCCGGCCCTCAGCACCCGCCGTTCCTCTGACTCAACG
GTGGGGATCGCCGACTCGCCGCGGATGCTCCCGGACGGCCTCAAGACGGA
CGAG
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