mRNA_L-elsbetiae_contig1408.3045.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1408.3045.1
Unique NamemRNA_L-elsbetiae_contig1408.3045.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1408.3045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1408contigL-elsbetiae_contig1408:4589..6923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1242
Cds size1218
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1408.3045.1prot_L-elsbetiae_contig1408.3045.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1408 4613..6923 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.2060459-UTR-L-elsbetiae_contig1408:4588..46121622815558.2060459-UTR-L-elsbetiae_contig1408:4588..4612Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1408 4589..4612 +
1691682958.6346314-UTR-L-elsbetiae_contig1408:4588..46121691682958.6346314-UTR-L-elsbetiae_contig1408:4588..4612Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1408 4589..4612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.2187645-CDS-L-elsbetiae_contig1408:4612..48971622815558.2187645-CDS-L-elsbetiae_contig1408:4612..4897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1408 4613..4897 +
1691682958.643616-CDS-L-elsbetiae_contig1408:4612..48971691682958.643616-CDS-L-elsbetiae_contig1408:4612..4897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1408 4613..4897 +
1622815558.2320688-CDS-L-elsbetiae_contig1408:5364..55811622815558.2320688-CDS-L-elsbetiae_contig1408:5364..5581Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1408 5365..5581 +
1691682958.6533475-CDS-L-elsbetiae_contig1408:5364..55811691682958.6533475-CDS-L-elsbetiae_contig1408:5364..5581Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1408 5365..5581 +
1622815558.2441258-CDS-L-elsbetiae_contig1408:6207..69231622815558.2441258-CDS-L-elsbetiae_contig1408:6207..6923Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1408 6208..6923 +
1691682958.6655135-CDS-L-elsbetiae_contig1408:6207..69231691682958.6655135-CDS-L-elsbetiae_contig1408:6207..6923Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1408 6208..6923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1408.3045.1

>prot_L-elsbetiae_contig1408.3045.1 ID=prot_L-elsbetiae_contig1408.3045.1|Name=mRNA_L-elsbetiae_contig1408.3045.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=406bp
MSEAAAAAAAATPAALPAGGAEEPPPLSSLYATPPSPSPLPDDEENTAPA
TPSPAPAPPPAQPVSRVVEAAAAAAAAAAESARVEEERKNGPLEALQERQ
HERPLRQQLQLEEQQPRSIAPTPHPQTQPQQPMPQPPPPAFMMPDFANNL
VPLPAAASGAPPPLPVEPPTPDPIIAPSSAPAPLAPFSPPALTCNPLPPA
VPESTHSLSMLVPSPTPQMLSAPSPQPGVEAAAAAAAASAPPGQAPFAPA
HSLPSTAADAANTDTRTAGVSAGAAAATIFPPPRPPALPATGGVVSSMGT
ENDSSSSLPSPLAAPATTDQFRFHQPSLAAAAIPAGLPGAGGVGWREEGN
AAAAAVATTPAVLTPVAPVAPLSPSHHQGDAALQQQQQGMGTGTGSGSGM
QLQFQL
back to top

mRNA from alignment at L-elsbetiae_contig1408:4589..6923+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1408.3045.1 ID=mRNA_L-elsbetiae_contig1408.3045.1|Name=mRNA_L-elsbetiae_contig1408.3045.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2335bp|location=Sequence derived from alignment at L-elsbetiae_contig1408:4589..6923+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCCTGCACCGTCAAACCTGCCGATGTCGGAAGCGGCGGCGGCGGCAGC
GGCGGCGACACCGGCCGCTTTGCCTGCGGGGGGGGCGGAGGAGCCGCCTC
CCTTGTCTTCGCTCTACGCTACGCCGCCCTCCCCGAGTCCACTGCCCGAT
GATGAAGAGAACACTGCACCTGCTACGCCTTCCCCCGCCCCCGCACCGCC
ACCTGCTCAGCCCGTTTCCCGGGTCGTGGAGGCCGCTGCCGCTGCCGCCG
CCGCCGCCGCTGAGAGTGCGAGAGTGGAGGAGGAGCGCAAAAACGGGCCT
CTGGAGGCGGTAAGCCACCGTGACCTACCACTACTGCTGTATAGTTGTTG
GAGATGGGGCGGGGTGGACCGGGATAAAAAGGGTACGCTGGCGGTGTTTG
GCTGCTAGTTTCTTTTTGTCCTGCGCGTTGTTGCTTTATTTTCTCTCTTC
GGGCTCTGTCGTCTCGTTCTGTTTCTCGGACTTGATGGGATGCGATGAGA
GCGATTTGATAGGCCAACTACATACAGGCCGGCCTGAGCACGACGCACTT
GGTGGGAGGCGAAAGAAAGATGCCGCGATCAACGAACGTGTCCGGAAGAC
GATCAATCGCAACAAGCCGACGAGACTCGACTAAAATATTCGGACCGAGC
GGCCGAACGTTTGCACAGCAATGAAAACAGTGGAATCACTTCCGTCTTGT
CTGTTGTCCGCTGTCGAACTACTGTGTATGCGTTGGTTGCATGTTTCGTT
CCAACGTACGGCAACGGCGGCAGCAGCTGCAGGAACGGCAGCACGAGCGA
CCACTACGGCAGCAATTGCAGCTAGAAGAGCAACAGCCACGGAGCATCGC
TCCGACGCCGCACCCACAAACGCAGCCGCAGCAGCCGATGCCACAGCCGC
CGCCTCCTGCTTTCATGATGCCAGATTTTGCCAACAACTTGGTCCCGCTC
CCGGCGGCGGCATCTGGCGCCCCCCCTCCTCTTCCCGTCGAACGTGAGCC
GTGTGTTTAACTGAGGGTTCGGCCGGTCTCACGAAGAGATCCTATTGTAG
CCCGAAGTGTTCTTGTCGGTGTTCGGCAGAAATGGCGTTGTTTTTTGATG
GGGCGACCTATGAGCCTTTCTTTATAACCTCCGACTCGCGAGAGCGGACC
GCACCCACGAGCGGCACCTGACAGCACCGAGCCTCCTTCGCGCACGCTTT
GTAGAGTTGTGGTAGAAGGCGTAGATGTACGCAGGAGCGTTCTACCCTAG
TCGGCAGCAATCAGCTCATTCCATGCCGTTTTTTGTCTCCCGTCATGCGT
GTTTGTAGCTCGAATGTAGCGCCGCCCTTCTCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCC
CCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNN
NNNNTCTCCCGTTGTCGCCACACCTCCCCCCTTTCCATCCCTTTTTTTCC
CCCCCGTCTTGGGTGTTTTTATCTCGCATGTAGCCCCCCCCTCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCGGTACCCGCCGTT
TTACCTTTCATTGGCGCAGCTCCAACTCCGGATCCGATTATCGCCCCGTC
TTCCGCGCCAGCTCCTCTTGCCCCTTTCAGCCCTCCTGCGCTCACCTGCA
ACCCGCTTCCACCCGCCGTGCCTGAGAGCACGCACTCGCTGTCGATGCTC
GTCCCCTCGCCGACGCCTCAGATGCTGTCGGCCCCTTCCCCTCAGCCGGG
AGTGGAGGCCGCGGCTGCTGCCGCCGCCGCCTCTGCTCCTCCTGGCCAGG
CGCCTTTCGCACCCGCTCATTCCCTGCCAAGCACTGCTGCCGATGCTGCC
AATACCGATACTCGCACCGCTGGCGTTAGCGCGGGCGCGGCGGCAGCGAC
AATATTTCCGCCCCCCCGCCCTCCCGCTCTCCCCGCCACCGGCGGAGTTG
TTAGCTCTATGGGCACGGAGAACGACAGCAGTAGCTCGCTACCATCACCA
TTGGCAGCACCGGCGACGACGGACCAGTTTCGATTTCACCAGCCAAGCTT
GGCGGCGGCCGCAATACCGGCGGGGCTGCCGGGGGCTGGGGGCGTAGGTT
GGCGAGAAGAAGGCAACGCGGCGGCGGCGGCGGTAGCGACCACCCCTGCG
GTACTGACCCCCGTGGCTCCTGTGGCGCCCCTGTCGCCGTCCCACCATCA
GGGCGACGCAGCGCTCCAGCAGCAGCAGCAGGGGATGGGGACGGGAACGG
GGTCGGGGTCGGGGATGCAACTACAGTTTCAGCTA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1408:4589..6923+

>mRNA_L-elsbetiae_contig1408.3045.1 ID=mRNA_L-elsbetiae_contig1408.3045.1|Name=mRNA_L-elsbetiae_contig1408.3045.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2436bp|location=Sequence derived from alignment at L-elsbetiae_contig1408:4589..6923+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGAAGCGGCGGCGGCGGCAGCGGCGGCGACACCGGCCGCTTTGCC
TGCGGGGGGGGCGGAGGAGCCGCCTCCCTTGTCTTCGCTCTACGCTACGC
CGCCCTCCCCGAGTCCACTGCCCGATGATGAAGAGAACACTGCACCTGCT
ACGCCTTCCCCCGCCCCCGCACCGCCACCTGCTCAGCCCGTTTCCCGGGT
CGTGGAGGCCGCTGCCGCTGCCGCCGCCGCCGCCGCTGAGAGTGCGAGAG
TGGAGGAGGAGCGCAAAAACGGGCCTCTGGAGGCGATGTCGGAAGCGGCG
GCGGCGGCAGCGGCGGCGACACCGGCCGCTTTGCCTGCGGGGGGGGCGGA
GGAGCCGCCTCCCTTGTCTTCGCTCTACGCTACGCCGCCCTCCCCGAGTC
CACTGCCCGATGATGAAGAGAACACTGCACCTGCTACGCCTTCCCCCGCC
CCCGCACCGCCACCTGCTCAGCCCGTTTCCCGGGTCGTGGAGGCCGCTGC
CGCTGCCGCCGCCGCCGCCGCTGAGAGTGCGAGAGTGGAGGAGGAGCGCA
AAAACGGGCCTCTGGAGGCGCTGCAGGAACGGCAGCACGAGCGACCACTA
CGGCAGCAATTGCAGCTAGAAGAGCAACAGCCACGGAGCATCGCTCCGAC
GCCGCACCCACAAACGCAGCCGCAGCAGCCGATGCCACAGCCGCCGCCTC
CTGCTTTCATGATGCCAGATTTTGCCAACAACTTGGTCCCGCTCCCGGCG
GCGGCATCTGGCGCCCCCCCTCCTCTTCCCGTCGAACCTGCAGGAACGGC
AGCACGAGCGACCACTACGGCAGCAATTGCAGCTAGAAGAGCAACAGCCA
CGGAGCATCGCTCCGACGCCGCACCCACAAACGCAGCCGCAGCAGCCGAT
GCCACAGCCGCCGCCTCCTGCTTTCATGATGCCAGATTTTGCCAACAACT
TGGTCCCGCTCCCGGCGGCGGCATCTGGCGCCCCCCCTCCTCTTCCCGTC
GAACCTCCAACTCCGGATCCGATTATCGCCCCGTCTTCCGCGCCAGCTCC
TCTTGCCCCTTTCAGCCCTCCTGCGCTCACCTGCAACCCGCTTCCACCCG
CCGTGCCTGAGAGCACGCACTCGCTGTCGATGCTCGTCCCCTCGCCGACG
CCTCAGATGCTGTCGGCCCCTTCCCCTCAGCCGGGAGTGGAGGCCGCGGC
TGCTGCCGCCGCCGCCTCTGCTCCTCCTGGCCAGGCGCCTTTCGCACCCG
CTCATTCCCTGCCAAGCACTGCTGCCGATGCTGCCAATACCGATACTCGC
ACCGCTGGCGTTAGCGCGGGCGCGGCGGCAGCGACAATATTTCCGCCCCC
CCGCCCTCCCGCTCTCCCCGCCACCGGCGGAGTTGTTAGCTCTATGGGCA
CGGAGAACGACAGCAGTAGCTCGCTACCATCACCATTGGCAGCACCGGCG
ACGACGGACCAGTTTCGATTTCACCAGCCAAGCTTGGCGGCGGCCGCAAT
ACCGGCGGGGCTGCCGGGGGCTGGGGGCGTAGGTTGGCGAGAAGAAGGCA
ACGCGGCGGCGGCGGCGGTAGCGACCACCCCTGCGGTACTGACCCCCGTG
GCTCCTGTGGCGCCCCTGTCGCCGTCCCACCATCAGGGCGACGCAGCGCT
CCAGCAGCAGCAGCAGGGGATGGGGACGGGAACGGGGTCGGGGTCGGGGA
TGCAACTACAGTTTCAGCTACTCCAACTCCGGATCCGATTATCGCCCCGT
CTTCCGCGCCAGCTCCTCTTGCCCCTTTCAGCCCTCCTGCGCTCACCTGC
AACCCGCTTCCACCCGCCGTGCCTGAGAGCACGCACTCGCTGTCGATGCT
CGTCCCCTCGCCGACGCCTCAGATGCTGTCGGCCCCTTCCCCTCAGCCGG
GAGTGGAGGCCGCGGCTGCTGCCGCCGCCGCCTCTGCTCCTCCTGGCCAG
GCGCCTTTCGCACCCGCTCATTCCCTGCCAAGCACTGCTGCCGATGCTGC
CAATACCGATACTCGCACCGCTGGCGTTAGCGCGGGCGCGGCGGCAGCGA
CAATATTTCCGCCCCCCCGCCCTCCCGCTCTCCCCGCCACCGGCGGAGTT
GTTAGCTCTATGGGCACGGAGAACGACAGCAGTAGCTCGCTACCATCACC
ATTGGCAGCACCGGCGACGACGGACCAGTTTCGATTTCACCAGCCAAGCT
TGGCGGCGGCCGCAATACCGGCGGGGCTGCCGGGGGCTGGGGGCGTAGGT
TGGCGAGAAGAAGGCAACGCGGCGGCGGCGGCGGTAGCGACCACCCCTGC
GGTACTGACCCCCGTGGCTCCTGTGGCGCCCCTGTCGCCGTCCCACCATC
AGGGCGACGCAGCGCTCCAGCAGCAGCAGCAGGGGATGGGGACGGGAACG
GGGTCGGGGTCGGGGATGCAACTACAGTTTCAGCTA
back to top