mRNA_L-elsbetiae_contig1400.2999.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1400.2999.1
Unique NamemRNA_L-elsbetiae_contig1400.2999.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1400.2999.1 vs. uniprot
Match: D8LJ06_ECTSI (CCT-beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ06_ECTSI)

HSP 1 Score: 264 bits (675), Expect = 8.320e-84
Identity = 138/142 (97.18%), Postives = 142/142 (100.00%), Query Frame = 1 
Query:   40 MATEAVLNDNAQVDKGDNARLSSFVGAIAIADLVKTTLGPKGMDKILQSVGSRDGGISVTNDGATILRSIHVDNAAAKVLVNIAKTQDDEVGDGTTSVTVLCGELLREAEQLVNQRLHPQTIIQGWRLATAAARKVLADSAE 465
            MATEAVLNDNAQVDKGDNARLSSFVGAIAIADLVKTTLGPKGMDKILQS+GSRDGGISVTNDGATILR+IHVDNAAAKVLVNIAKTQDDEVGDGTTSVTVLCGELLREAE+LVNQRLHPQTIIQGWRLATAAAR+VLADSAE
Sbjct:    1 MATEAVLNDNAQVDKGDNARLSSFVGAIAIADLVKTTLGPKGMDKILQSMGSRDGGISVTNDGATILRAIHVDNAAAKVLVNIAKTQDDEVGDGTTSVTVLCGELLREAEKLVNQRLHPQTIIQGWRLATAAARRVLADSAE 142
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BLAST of mRNA_L-elsbetiae_contig1400.2999.1 vs. uniprot
Match: A0A836CDN2_9STRA (CCT-beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDN2_9STRA)

HSP 1 Score: 250 bits (638), Expect = 2.880e-78
Identity = 130/142 (91.55%), Postives = 137/142 (96.48%), Query Frame = 1 
Query:   40 MATEAVLNDNAQVDKGDNARLSSFVGAIAIADLVKTTLGPKGMDKILQSVGSRDGGISVTNDGATILRSIHVDNAAAKVLVNIAKTQDDEVGDGTTSVTVLCGELLREAEQLVNQRLHPQTIIQGWRLATAAARKVLADSAE 465
            MATEAVLN+ AQVDKGDNARLSSFVGAIAIADLVKTTLGPKGMDKILQS+GSRDG +SVTNDGATILR+IHVDNAAAKVLV+IAKTQDDEVGDGTTSVTVLCGELLREAEQLVN RLHPQTIIQGWRLATA ARKVL ++AE
Sbjct:    1 MATEAVLNEQAQVDKGDNARLSSFVGAIAIADLVKTTLGPKGMDKILQSMGSRDGSVSVTNDGATILRAIHVDNAAAKVLVDIAKTQDDEVGDGTTSVTVLCGELLREAEQLVNARLHPQTIIQGWRLATAIARKVLVEAAE 142
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BLAST of mRNA_L-elsbetiae_contig1400.2999.1 vs. uniprot
Match: A0A7S2R4B7_9STRA (CCT-beta n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4B7_9STRA)

HSP 1 Score: 221 bits (564), Expect = 4.440e-67
Identity = 112/142 (78.87%), Postives = 127/142 (89.44%), Query Frame = 1 
Query:   25 PYRTAMATEAVLNDNAQVDKGDNARLSSFVGAIAIADLVKTTLGPKGMDKILQSVGSRDGGISVTNDGATILRSIHVDNAAAKVLVNIAKTQDDEVGDGTTSVTVLCGELLREAEQLVNQRLHPQTIIQGWRLATAAARKVL 450
            P R  M+ EAVLN  AQVDKG+NAR+SSFVGAIA+ADLVK+TLGPKGMDKIL SV S DGGI++TNDGATIL+SI+VDNAAAKVLV+IAK QDDEVGDGTTSVTVLCGELLREAE+L+NQR+HPQT+I+GWR A   ARK L
Sbjct:   11 PPRPTMSAEAVLNAEAQVDKGENARMSSFVGAIAVADLVKSTLGPKGMDKILSSVSSPDGGITITNDGATILKSIYVDNAAAKVLVDIAKVQDDEVGDGTTSVTVLCGELLREAEKLINQRIHPQTVIEGWRKAANIARKTL 152
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BLAST of mRNA_L-elsbetiae_contig1400.2999.1 vs. uniprot
Match: A0A7R9UEE6_9STRA (CCT-beta (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEE6_9STRA)

HSP 1 Score: 214 bits (544), Expect = 2.350e-65
Identity = 112/142 (78.87%), Postives = 124/142 (87.32%), Query Frame = 1 
Query:   40 MATEAVLNDNAQVDKGDNARLSSFVGAIAIADLVKTTLGPKGMDKILQSVGSRDGG-ISVTNDGATILRSIHVDNAAAKVLVNIAKTQDDEVGDGTTSVTVLCGELLREAEQLVNQRLHPQTIIQGWRLATAAARKVLADSA 462
            MATE VLN+ A +DKG+NARLSSFVGAIAIADLVKTTLGPKGMDKILQSVG  +   ++VTNDGATILRSIHV N AAK+LV IAKTQDDE+GDGTTSVTVLCGELLR+AE LVNQR+HPQTII+GWRLA   AR+ L  SA
Sbjct:    1 MATEMVLNEGASIDKGENARLSSFVGAIAIADLVKTTLGPKGMDKILQSVGDPNNQTVTVTNDGATILRSIHVANPAAKILVEIAKTQDDEIGDGTTSVTVLCGELLRQAETLVNQRIHPQTIIEGWRLARTVARQALESSA 142
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BLAST of mRNA_L-elsbetiae_contig1400.2999.1 vs. uniprot
Match: A0A7S2DLH1_9STRA (CCT-beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLH1_9STRA)

HSP 1 Score: 215 bits (548), Expect = 7.430e-65
Identity = 109/137 (79.56%), Postives = 122/137 (89.05%), Query Frame = 1 
Query:   40 MATEAVLNDNAQVDKGDNARLSSFVGAIAIADLVKTTLGPKGMDKILQSVGSRDGGISVTNDGATILRSIHVDNAAAKVLVNIAKTQDDEVGDGTTSVTVLCGELLREAEQLVNQRLHPQTIIQGWRLATAAARKVL 450
            M+ EAVLN  AQVDKG+NAR+SSF+GAIA+ADLVK+TLGPKGMDKIL SVGS  G I++TNDGATILRSIHVDNAAAKVLV+IAK QDDEVGDGTTSV VLCGELLREAE L+ QR+HPQTII+GWR+AT  AR  L
Sbjct:    1 MSAEAVLNAEAQVDKGENARMSSFIGAIAVADLVKSTLGPKGMDKILTSVGSEGGNITITNDGATILRSIHVDNAAAKVLVDIAKVQDDEVGDGTTSVAVLCGELLREAESLIQQRIHPQTIIEGWRMATNIARAEL 137
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BLAST of mRNA_L-elsbetiae_contig1400.2999.1 vs. uniprot
Match: A0A6V1SR55_HETAK (CCT-beta n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SR55_HETAK)

HSP 1 Score: 212 bits (540), Expect = 1.120e-63
Identity = 108/137 (78.83%), Postives = 119/137 (86.86%), Query Frame = 1 
Query:   40 MATEAVLNDNAQVDKGDNARLSSFVGAIAIADLVKTTLGPKGMDKILQSVGSRDGGISVTNDGATILRSIHVDNAAAKVLVNIAKTQDDEVGDGTTSVTVLCGELLREAEQLVNQRLHPQTIIQGWRLATAAARKVL 450
            MATEAVLND A V+KGDNAR+ SFVGAIAI D+VKTTLGPKGMDKIL SV + D  ISVTNDGATIL+S+HVDNAAAKVL++IAKTQDDEVGDGTTSV VLCGELLREAE L+N R+HPQT+I GWR A   AR VL
Sbjct:    1 MATEAVLNDQASVEKGDNARMMSFVGAIAICDMVKTTLGPKGMDKILVSVSAHDKSISVTNDGATILKSVHVDNAAAKVLIDIAKTQDDEVGDGTTSVAVLCGELLREAEALINARIHPQTVIHGWRKAAQIARGVL 137
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BLAST of mRNA_L-elsbetiae_contig1400.2999.1 vs. uniprot
Match: I2CP43_NANGC (CCT-beta n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP43_NANGC)

HSP 1 Score: 212 bits (540), Expect = 1.120e-63
Identity = 111/143 (77.62%), Postives = 124/143 (86.71%), Query Frame = 1 
Query:   40 MATEAVLNDNAQVDKGDNARLSSFVGAIAIADLVKTTLGPKGMDKILQSVGSRDGGISVTNDGATILRSIHVDNAAAKVLVNIAKTQDDEVGDGTTSVTVLCGELLREAEQLV-NQRLHPQTIIQGWRLATAAARKVLADSAE 465
            M+   VLN  A+VDKG+NAR+SSF+GAIAIADLVKTTLGPKGMDKILQSVGS +G I+VTNDGATIL+S+H+DN AAKVLV+IAKTQDDEVGDGTTSV VLCGELLREAE L+ NQRLHPQT+ QGWR AT  ARK L   AE
Sbjct:    1 MSYAGVLNAGAEVDKGENARMSSFIGAIAIADLVKTTLGPKGMDKILQSVGSSEGAITVTNDGATILKSVHIDNPAAKVLVDIAKTQDDEVGDGTTSVAVLCGELLREAESLLSNQRLHPQTVAQGWREATILARKALEGLAE 143
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BLAST of mRNA_L-elsbetiae_contig1400.2999.1 vs. uniprot
Match: A0A6G0XN95_9STRA (CCT-beta n=10 Tax=Saprolegniaceae TaxID=4764 RepID=A0A6G0XN95_9STRA)

HSP 1 Score: 210 bits (534), Expect = 8.670e-63
Identity = 106/137 (77.37%), Postives = 123/137 (89.78%), Query Frame = 1 
Query:   55 VLNDNAQVDKGDNARLSSFVGAIAIADLVKTTLGPKGMDKILQSVGSRDGGISVTNDGATILRSIHVDNAAAKVLVNIAKTQDDEVGDGTTSVTVLCGELLREAEQLVNQRLHPQTIIQGWRLATAAARKVLADSAE 465
            VLN  +QV+KG+NARL+SFVGAIAIAD+VKTTLGPKGMDKILQSVG  D  ISVTNDGATIL+S+++DNAAAKVLV+IAKTQDDEVGDGTTSV VLCGELLREAE+L++QR+HPQTII GWR+A + A   L DSA+
Sbjct:    6 VLNPESQVEKGENARLASFVGAIAIADMVKTTLGPKGMDKILQSVGGPDKSISVTNDGATILKSVYIDNAAAKVLVDIAKTQDDEVGDGTTSVAVLCGELLREAEKLIDQRIHPQTIIDGWRIALSTAHMALEDSAK 142
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BLAST of mRNA_L-elsbetiae_contig1400.2999.1 vs. uniprot
Match: K3WY33_GLOUD (CCT-beta n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WY33_GLOUD)

HSP 1 Score: 208 bits (529), Expect = 4.880e-62
Identity = 105/139 (75.54%), Postives = 125/139 (89.93%), Query Frame = 1 
Query:   49 EAVLNDNAQVDKGDNARLSSFVGAIAIADLVKTTLGPKGMDKILQSVGSRDGGISVTNDGATILRSIHVDNAAAKVLVNIAKTQDDEVGDGTTSVTVLCGELLREAEQLVNQRLHPQTIIQGWRLATAAARKVLADSAE 465
            +AVL+  +QV+KG+NAR+SSFVGAIAIAD+VKTTLGPKGMDKILQS+G  D  ISVTNDGATILRS++VDNAAAKVLV+IAKTQD+EVGDGTTSV VLCGELLREAE+L++QR+HPQTII GWR+A + A + L  SA+
Sbjct:    3 QAVLDPESQVEKGENARMSSFVGAIAIADMVKTTLGPKGMDKILQSMGGPDKSISVTNDGATILRSVYVDNAAAKVLVDIAKTQDEEVGDGTTSVAVLCGELLREAEKLIDQRIHPQTIIDGWRIALSTAHEALVKSAK 141
[Close]
BLAST of mRNA_L-elsbetiae_contig1400.2999.1 vs. uniprot
Match: A0A7S2RXR6_9STRA (CCT-beta n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RXR6_9STRA)

HSP 1 Score: 207 bits (528), Expect = 6.860e-62
Identity = 105/138 (76.09%), Postives = 119/138 (86.23%), Query Frame = 1 
Query:   49 EAVLNDNAQVDKGDNARLSSFVGAIAIADLVKTTLGPKGMDKILQSVGSRDGGISVTNDGATILRSIHVDNAAAKVLVNIAKTQDDEVGDGTTSVTVLCGELLREAEQLVNQRLHPQTIIQGWRLATAAARKVLADSA 462
            +A L+    VDKG+NARLSSFVGAIAIAD+VKTTLGPKGMDKILQ +   D GISVTNDGATILRS+ +DNAAAKVLV+IA+ QDDEVGDGTTSV VLCGELLREAEQLVNQR+HPQTI+ GWR+A   ARK L ++A
Sbjct:    3 QAFLDQGTSVDKGENARLSSFVGAIAIADMVKTTLGPKGMDKILQKISEHDQGISVTNDGATILRSVMLDNAAAKVLVDIARVQDDEVGDGTTSVAVLCGELLREAEQLVNQRIHPQTIVAGWRIARGVARKALEEAA 140
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1400.2999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ06_ECTSI8.320e-8497.18CCT-beta n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A836CDN2_9STRA2.880e-7891.55CCT-beta n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
A0A7S2R4B7_9STRA4.440e-6778.87CCT-beta n=2 Tax=Rhizochromulina marina TaxID=1034... [more]
A0A7R9UEE6_9STRA2.350e-6578.87CCT-beta (Fragment) n=1 Tax=Pinguiococcus pyrenoid... [more]
A0A7S2DLH1_9STRA7.430e-6579.56CCT-beta n=1 Tax=Dictyocha speculum TaxID=35687 Re... [more]
A0A6V1SR55_HETAK1.120e-6378.83CCT-beta n=1 Tax=Heterosigma akashiwo TaxID=2829 R... [more]
I2CP43_NANGC1.120e-6377.62CCT-beta n=1 Tax=Nannochloropsis gaditana (strain ... [more]
A0A6G0XN95_9STRA8.670e-6377.37CCT-beta n=10 Tax=Saprolegniaceae TaxID=4764 RepID... [more]
K3WY33_GLOUD4.880e-6275.54CCT-beta n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WY3... [more]
A0A7S2RXR6_9STRA6.860e-6276.09CCT-beta n=1 Tax=Eucampia antarctica TaxID=49252 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1400contigL-elsbetiae_contig1400:21620..26044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score266.9
Seed ortholog evalue5.8e-69
Seed eggNOG ortholog2880.D8LJ06
Preferred nameCCT2
KEGG koko:K09494
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000323,GO:0001775,GO:0002199,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005829,GO:0005832,GO:0005856,GO:0005874,GO:0005886,GO:0006403,GO:0006457,GO:0006458,GO:0006810,GO:0006887,GO:0006955,GO:0007338,GO:0007339,GO:0008037,GO:0008144,GO:0008150,GO:0009566,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009988,GO:0010556,GO:0010557,GO:0010604,GO:0010638,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0017076,GO:0019219,GO:0019222,GO:0019899,GO:0019953,GO:0022414,GO:0022607,GO:0030141,GO:0030312,GO:0030554,GO:0031224,GO:0031225,GO:0031226,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031410,GO:0031625,GO:0031647,GO:0031974,GO:0031982,GO:0031983,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0034622,GO:0034774,GO:0035036,GO:0035578,GO:0035639,GO:0036094,GO:0036230,GO:0042119,GO:0042582,GO:0043085,GO:0043167,GO:0043168,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043933,GO:0044085,GO:0044093,GO:0044183,GO:0044297,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045055,GO:0045321,GO:0045935,GO:0046658,GO:0046903,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051052,GO:0051054,GO:0051082,GO:0051084,GO:0051086,GO:0051128,GO:0051130,GO:0051131,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051338,GO:0051347,GO:0051704,GO:0051972,GO:0051973,GO:0060205,GO:0060255,GO:0060341,GO:0061077,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070202,GO:0070203,GO:0071840,GO:0071944,GO:0080090,GO:0090666,GO:0090670,GO:0090685,GO:0097159,GO:0097367,GO:0097708,GO:0099080,GO:0099081,GO:0099503,GO:0099512,GO:0099513,GO:0101031,GO:1901265,GO:1901363,GO:1901998,GO:1903827,GO:1903829,GO:1904356,GO:1904358,GO:1904814,GO:1904816,GO:1904851,GO:1904872,GO:1904874,GO:1904951,GO:2000112,GO:2000278,GO:2000573,GO:2001252
EggNOG free text desc.chaperone mediated protein folding independent of cofactor
EggNOG OGsCOG0459@1,KOG0363@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110,ko04147
Ec32 ortholog descriptionTCP-1-like chaperonin intermediate domain
Ec32 orthologEc-20_002230.1
Exons5
Model size465
Cds size465
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1400.2999.1prot_L-elsbetiae_contig1400.2999.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1400 21620..26044 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.5008955-CDS-L-elsbetiae_contig1400:21619..216701622815553.5008955-CDS-L-elsbetiae_contig1400:21619..21670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1400 21620..21670 +
1691682955.8666143-CDS-L-elsbetiae_contig1400:21619..216701691682955.8666143-CDS-L-elsbetiae_contig1400:21619..21670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1400 21620..21670 +
1622815553.5143852-CDS-L-elsbetiae_contig1400:23099..232111622815553.5143852-CDS-L-elsbetiae_contig1400:23099..23211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1400 23100..23211 +
1691682955.8772163-CDS-L-elsbetiae_contig1400:23099..232111691682955.8772163-CDS-L-elsbetiae_contig1400:23099..23211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1400 23100..23211 +
1622815553.5281863-CDS-L-elsbetiae_contig1400:23722..238591622815553.5281863-CDS-L-elsbetiae_contig1400:23722..23859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1400 23723..23859 +
1691682955.8870776-CDS-L-elsbetiae_contig1400:23722..238591691682955.8870776-CDS-L-elsbetiae_contig1400:23722..23859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1400 23723..23859 +
1622815553.5415878-CDS-L-elsbetiae_contig1400:24770..248691622815553.5415878-CDS-L-elsbetiae_contig1400:24770..24869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1400 24771..24869 +
1691682955.8995042-CDS-L-elsbetiae_contig1400:24770..248691691682955.8995042-CDS-L-elsbetiae_contig1400:24770..24869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1400 24771..24869 +
1622815553.5613585-CDS-L-elsbetiae_contig1400:25978..260441622815553.5613585-CDS-L-elsbetiae_contig1400:25978..26044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1400 25979..26044 +
1691682955.9076939-CDS-L-elsbetiae_contig1400:25978..260441691682955.9076939-CDS-L-elsbetiae_contig1400:25978..26044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1400 25979..26044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1400.2999.1

>prot_L-elsbetiae_contig1400.2999.1 ID=prot_L-elsbetiae_contig1400.2999.1|Name=mRNA_L-elsbetiae_contig1400.2999.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=155bp
RYSPPAILPYRTAMATEAVLNDNAQVDKGDNARLSSFVGAIAIADLVKTT
LGPKGMDKILQSVGSRDGGISVTNDGATILRSIHVDNAAAKVLVNIAKTQ
DDEVGDGTTSVTVLCGELLREAEQLVNQRLHPQTIIQGWRLATAAARKVL
ADSAE
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mRNA from alignment at L-elsbetiae_contig1400:21620..26044+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1400.2999.1 ID=mRNA_L-elsbetiae_contig1400.2999.1|Name=mRNA_L-elsbetiae_contig1400.2999.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4425bp|location=Sequence derived from alignment at L-elsbetiae_contig1400:21620..26044+ (Laminarionema elsbetiae ELsaHSoW15)
CGCTATAGCCCACCAGCGATCCTACCTTACCGCACAGCCATGGCAACAGA
GGTGAGTTTTTGAGTTGTCGGGGTGCGCTCTGTGTCCTAGTTGTAGTTGT
GCCACAACTCTCAAATCTTTTTGAACGGATCACGAACGAGCAGGGAGGTC
TTCTCTTCAAATAATTGGTGTGTCGGAGGATGGAGGATCCAAACCAGTCT
CCAGGTCTATGGTCGTTTCCGGTGGACCCCACGTATTGGCAGCGCGTCGG
AGAAGGCTTGGGCCTGTGCATTCGTTCTGTCCTAGTAGAGTTCTGTTCGT
GATTTGAACCACAGCAGTCAGGTCTCTTACCGGTAGACTTCGCAGAACAT
CCACCCCGCCCCTCTGCTGCCGTGGGCGTCAAGCGTGGGGACCGGGCTTA
TGCTTTCGTTGAAACCTAAGAGGTATTGGTTGCTTCCGCCTAGCGGAAAG
CGTGCAGCACGTTTTTGATGTAGTGCAACAAGAAACGTACCTCCTTTTGG
TTTGCTCGGTGTGCATCGTGAAGTTTTGAACTGCCTCTCCCCCCCGTCCG
GCAGGGGTCGTTGGCGTTGATGGTGTTTGTCTCCCTGCCGCCCTTCCCTT
TCACACGCCTGTTAGCATTCCGTGGTTCAAAAACTCGACGAGTTGGACAT
CAAAGTTTCAAAGCTCGGCGTCGTCTGCTGTTGTGGAACTTACCCAAAAC
AACTACCACTATCTCCATGTTACCTACAACTCAGCGGGCGGGTTTTCTCC
ACAGCTGACACGCCCCGGTTATAAAAGGGCCTCTCTGTGTATCCATCGGC
ATCATAAGCCTCGTCTGTGGCGTATATGTAGGGTATAATCTAGGAGTGAA
GCACCGCCGCCAGATACAGCATGGGTGTTCGGCTGTGTGGTGTACCAAAA
ACCGACGTCCAATAACAAAAAAACACTCGTTGGGGGATTGGTTCAAAAGT
AATCGGTAGACTCCTGCTGTGTGTGTAGACTATAAGAGACTACATACACA
CACACGCAAGCTTCGCGCATATGATGTGGTGTTATGTACAGGATATGTAC
AGCAGCATGTACTCCGTAGAGCTGCAAGCAGCGGTGTCGTCCAAGTACCC
GAAGGATCTCGATCAGCTGGTAATGCAGAACGCCCAAAACCTAGATAGCC
GGCTTTGTACGGCGTCTCCCTCTCTCATATGCAAATCAGTCAGCAGTGTG
TTATCCCGGGTTTGGCCACCCTATGATGAACGCAGCCTCTCGAACGCGGA
GCTCGTTTTCCAAATCAAACGTTGAAGTAGGTCACAACCGCAGCAGCAGT
CTCTCTCGTCGCCCGGGCTTTCCGTCCTTCCTTGACTGCGTGCGGCCCCT
GATTGCTTGGATTGCTTGAGCCCCCCCCCCCCCGCTGTCAGTGTTTTGTC
TCACTCTTGTGTTCGTTTGCATGTTTGGTGTTGTGGTGTGGCGGCACGTG
GACGGACAAAACTGGAACTCTCTGCTGCAGGCGGTACTAAACGACAATGC
ACAGGTGGACAAGGGAGACAACGCGCGGCTGAGCTCGTTCGTCGGCGCCA
TCGCCATCGCAGACCTCGTCAAGACCACCCTCGGGCCCAAAGGTCAGCGC
GGCGGCACGAGAGTGTCACGGGGGGGGGGCGGGAGGGACACACAGGCAGT
TTGCGGCTTTCGTTGGTTGCTGGGCCGGGTACATACATGGCGCGGTCGGT
GCTGAAGTCTGAAGCAATGTGGAAGGGTGATTAAATACACGCACGAAACC
ACGCGCAACACACGCACACACACTGCAGTTCTCGTGTCAGGCGCAAACCT
GTTGTATCTACGAGTCCCAGTCTGGGTGTTTGTGTCATACGGGCAGGACA
ACTTCGTGGCCTCACATACACAGATACAGCCCCATCGCCCCCAGTCACCT
ACCTAGCAGGTTGCCGACCTGCAACTGGCACGCGCTAAAACATGCCTCCT
GGGCAAGTGGAACGCCTCCAGTACCTTTGAGAGCTTCGACAGCAGTAGTT
GTACGTATGTATGCGCCACGTACTTGAACGTCCACCCTCCCTCCACTCCC
CAAAACGCAACCGCACGGCGGTGCCGTCATGTGCTTGGTACGTACGTACG
TAGGTATGGATAAAATTTTGCAGTCTGTGGGGAGCCGGGATGGAGGCATC
AGCGTGACGAACGACGGTGCGACCATCTTGCGATCTATCCACGTCGACAA
CGCTGCCGCCAAGGTGTTGGTCAACATCGCCAAGACGCAGGCAAGTTGTT
TTGTAATAGTGAGCTCTCGTTTGACGTATGTAACGCCGAATTAATCTGCA
TCGTGGTATCGATAGGATGAGATCGTTATTGATGTGTTTGACGTAACGCC
CGGCAGAAATCGCAACGCGGAATGCGGCGGCCGGCCACCGGCATCAAACT
TGGCTCGTCACGTTTGCGCGTTTCCTCTTGACAATTTTCAATTTTCCTTG
ATCCAGCCATAGCCGTGGCGAGGTTTCAGGTCGGGATTTTTGGGGTTTTT
GATTCCTTTGGGTCAGGTCAGGTTAGGTCAGGGGTTTTCCACTGCTTTTT
TTTGGGGGGGGGGGGTTGGGTGACCAAACACGCTGAAGAATGTCGCACGT
TGATGTCGTACAATATTTCCATTTTCTGTGCTTCGTGCTTCGTGTATCTC
ATCAGCATATGTAGGTACCACCTTACTGGTGTACCGTAACCATGCGCAAG
TTAGCACCCATCGGGATCTTCACACCCATCGGAGATATGCATGCCACCGG
GGTGCGATAAAAATCCAAGAGAAACAGACTTGATTGGTTTTATCGCGCAC
CCCGGTGGCGATATCCTGGATAATGTGTTCCGCATATTGCATAAGATATC
GACACACGGTTTTGTACATTTTATCTATTTTTTTCCCTCCCATTATTGGC
TAATATATTCGTCGTCTGCCCCAATGGCCCCCATACTCCACTACGACTAG
CTAGACGACCCAACCGGGGTCACACAGGAGGGAGGGCGTGGACCCCCTCC
TGCGGTGCCTGCCTGTTATGTTGTCATTGTGAGCAGGGTGCAGCACTCCC
CACCCTCGTCAACAATGAAGTCGAAGAATTATTTACTAACGACATTACTG
CTGTTGTACGAATGCACGCACAAAAAATACACACATACTCTGCGTTTCCA
GGACGACGAGGTCGGAGACGGCACGACCAGCGTCACGGTGCTCTGCGGGG
AGCTGCTCCGGGAGGCCGAGCAGCTGGTCAACCAGCGGCTGCACCCACAG
GTCCGTCCCGTCCCGAAGATTATCCTCGGTTTCATCTTCGTCTTCGTCTT
CGTTATCTTCATCTAATGTACCGTGGGTTCAAATCCTACCGTTTCCATTT
GATAATTAAATTAATGTAATTTAAAAAAAAAGCTTATATTTGTGAAGTTT
GGTCTATTTAGTTCTGTAGATTTAAAAAGTTTAAAAACTTGGTTTTTATT
ATTATTTACCTTTTTCCCGTCCTTGTACAGGTTTGTCAACAAAAATAAAG
CGCTTTACATTGATTCGGTCTCCTTTATCTTTGTCTCTGTCTTCATCTTC
GTCTTCGAGTTCGCCCCCTCTTTGTTGTCCGTCGCACGCGTGTGCCGCGA
GCTAGTCACGGTCGCGGCATGCGCCATCGGAAAATAGTAGAACAAGCAGT
TCTACGTACCTTGCTGTACCCCCCCCCCCCCCCGCGCGCCCCCTCACACC
ATGTATTGTATTGCAATGTTTTAGTTAAATGTTGTACAAATGTCAGCAGT
CTACATCTTGTATGTTTTTTGTCATTGCTGGATACTATCTATTGTCTTGC
AGTGTTTTGTATGTTTTCGCTGGATGCGAAATGTCGACTGGCCTGCCTGC
TTGCTGACGGGTGTACGAGTACAATGTCATGGGGCGCAGGATAGGACGAG
TAAGAGCATTGTAGTCTGTTTTCCTTCTCTCTTGGGGGGTCTCTGCACGA
TTACAATATTGTTTTTTTTGGCGCCCTTCGTCTGCGAGCAAAACGGGATG
CATCTGCGTTTTTAAGAAGAGGACCCCGCCTGCGAAGCGCCACAACGGCA
CATCCGACAAACATAGCAAATGCATATCCACATCAATGACACCATCAGCA
CCGACAAAGCCATATGCTCATAAGCAAAAATAGCACCTCTGCCCGGGCTC
TAAATAGAGGAGACTTGTGCACAGAGTTTTTTCATCAGCCAAGCGTGGAG
ATCATGGAGCGAAATAATTAGCGTGCTACAGTTTTATGGAGGGGGTTCCA
TGATTATGATGTACATACTGTAGTTGACTTTTTCGTTTCTGCGTTACCCT
TGTTCATGTGTATGTCGGTGTGTGTGTGTTTTTTTTTTTTTTTTTACTCG
TGCCTTCAGACAATCATCCAGGGGTGGCGATTGGCGACGGCCGCAGCCCG
GAAAGTGCTGGCGGATAGCGCGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1400:21620..26044+

>mRNA_L-elsbetiae_contig1400.2999.1 ID=mRNA_L-elsbetiae_contig1400.2999.1|Name=mRNA_L-elsbetiae_contig1400.2999.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=930bp|location=Sequence derived from alignment at L-elsbetiae_contig1400:21620..26044+ (Laminarionema elsbetiae ELsaHSoW15)
CGCTATAGCCCACCAGCGATCCTACCTTACCGCACAGCCATGGCAACAGA
GCGCTATAGCCCACCAGCGATCCTACCTTACCGCACAGCCATGGCAACAG
AGGCGGTACTAAACGACAATGCACAGGTGGACAAGGGAGACAACGCGCGG
CTGAGCTCGTTCGTCGGCGCCATCGCCATCGCAGACCTCGTCAAGACCAC
CCTCGGGCCCAAAGGCGGTACTAAACGACAATGCACAGGTGGACAAGGGA
GACAACGCGCGGCTGAGCTCGTTCGTCGGCGCCATCGCCATCGCAGACCT
CGTCAAGACCACCCTCGGGCCCAAAGGTATGGATAAAATTTTGCAGTCTG
TGGGGAGCCGGGATGGAGGCATCAGCGTGACGAACGACGGTGCGACCATC
TTGCGATCTATCCACGTCGACAACGCTGCCGCCAAGGTGTTGGTCAACAT
CGCCAAGACGCAGGTATGGATAAAATTTTGCAGTCTGTGGGGAGCCGGGA
TGGAGGCATCAGCGTGACGAACGACGGTGCGACCATCTTGCGATCTATCC
ACGTCGACAACGCTGCCGCCAAGGTGTTGGTCAACATCGCCAAGACGCAG
GACGACGAGGTCGGAGACGGCACGACCAGCGTCACGGTGCTCTGCGGGGA
GCTGCTCCGGGAGGCCGAGCAGCTGGTCAACCAGCGGCTGCACCCACAGG
ACGACGAGGTCGGAGACGGCACGACCAGCGTCACGGTGCTCTGCGGGGAG
CTGCTCCGGGAGGCCGAGCAGCTGGTCAACCAGCGGCTGCACCCACAGAC
AATCATCCAGGGGTGGCGATTGGCGACGGCCGCAGCCCGGAAAGTGCTGG
CGGATAGCGCGGAGACAATCATCCAGGGGTGGCGATTGGCGACGGCCGCA
GCCCGGAAAGTGCTGGCGGATAGCGCGGAG
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