mRNA_L-elsbetiae_contig14.2991.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14.2991.1
Unique NamemRNA_L-elsbetiae_contig14.2991.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14.2991.1 vs. uniprot
Match: D7FVR6_ECTSI (Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVR6_ECTSI)

HSP 1 Score: 390 bits (1003), Expect = 5.610e-122
Identity = 200/267 (74.91%), Postives = 223/267 (83.52%), Query Frame = 1
Query:  181 QVNVEGVFDAVAIRLVLDARKWQGESAESYKQRTEDLCYQAMSVIQKLYPWSQL--RLKDYIVKPKPNGYQSLHATQLVPDVTDMSRHGRSVAVEFQVRSTQMHQQAEFGLAAHWSYKESHRTA-SSLGWISGNKDADISV-PTTDKGAPGKARVPDSVTSGPELVDWLHRELQERKVFVFGPDKKIWELDKGSATAGDVLGRSYMQRFYEGAVLHDRRRT-----GPSGTRGQDSAWVNGREVDASYLLKNGDVFDVQAASRDRDE 954
            QV VEGVFDAVA+R+VL+ARKWQGES ESY QR+EDLCYQAMSVI+KLYPWSQ   R+KDY+VKPKPNGYQSLHATQLVPDVTDM+RHG SVA+EFQVRS +MHQ+AEFGLAAHWSYKES  +  S LGW    +D + ++ P  +  APGKARVPDSVTSGPELVDWLHREL+ERKVFVFGPD+KIWELDKGSATAGD LGRSYMQ+FYEGA+LHDRR+      G    R   +AWVNGREVDASYLLKNGDVFDV  AS    E
Sbjct:  497 QVGVEGVFDAVAVRVVLEARKWQGESLESYTQRSEDLCYQAMSVIKKLYPWSQSPQRVKDYVVKPKPNGYQSLHATQLVPDVTDMTRHGPSVAIEFQVRSKEMHQKAEFGLAAHWSYKESSSSMPSGLGW---EEDTNTTITPPHNHKAPGKARVPDSVTSGPELVDWLHRELRERKVFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRRKIKSDAKGQGAKRKTRTAWVNGREVDASYLLKNGDVFDVAQASHQAPE 760          
BLAST of mRNA_L-elsbetiae_contig14.2991.1 vs. uniprot
Match: A0A6H5KUK5_9PHAE (RelA_SpoT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK5_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 5.250e-84
Identity = 175/337 (51.93%), Postives = 196/337 (58.16%), Query Frame = 1
Query:  181 QVNVEGVFDAVAIRLVLDARKWQGESAESYKQRTEDLCYQA----MSVIQKLYPWSQL--RLKDYIVKPKPNGYQSLHATQLVPDVTDMSRHGRSVAVEFQVRSTQMHQQAEFGLAAHWSYKESHRTA-SSLGWISGNKDADISVPTTDKGAPGKARVPDSVTSGPELVDWLHRELQERKVFVFGPDKKIWELDKGSATAGDVLGRSYMQRFYEGAVLHDRRRTGPSGTRGQDS------AWVNGREV------------------------------------------------------------------DASYLLKNGDVFDVQAASRDRDE 954
            QV VEGVFDAVA+R+VL+ARKWQGES ESY QR+EDLCYQA    MSVI+KLYPWSQ   R+KDY+VKPKPNGYQSLHATQLVPDVTDM+RHG SVA+EFQVRS +MHQ+AEFGLAAHWSYKES  +    LGW+  + +  I+ P T                              RKVFVFGPD+KIWELDKGSATAGD LGRSYMQ+FYEGA+LHDRR    SG +GQ +      AWVNGREV                                                                  DASYLLKNGDVFDV   S    E
Sbjct:  439 QVGVEGVFDAVAVRVVLEARKWQGESLESYTQRSEDLCYQASPCAMSVIKKLYPWSQSQQRVKDYVVKPKPNGYQSLHATQLVPDVTDMTRHGPSVAIEFQVRSKEMHQKAEFGLAAHWSYKESSSSMPGGLGWVE-DTNTTITRPHT------------------------------RKVFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRRNI-KSGAKGQGAKRKTRTAWVNGREVCAVISITVPEISAREYIRKHLHFTLCHVLSGRFLSLPRQCPLLGDGFEDVLFFFTICECGQFVHHVDASYLLKNGDVFDVAQTSHQAPE 743          
BLAST of mRNA_L-elsbetiae_contig14.2991.1 vs. uniprot
Match: A0A6H5JUF6_9PHAE (RelA_SpoT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUF6_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 2.210e-54
Identity = 122/261 (46.74%), Postives = 156/261 (59.77%), Query Frame = 1
Query:  187 NVEGVFDAVAIRLVLDARKWQGESAESYKQRTEDLCYQAMSVIQKLYPWSQLRLKDYIVKPKPNGYQSLHATQLV---PDVTDMSRHGRSVAVEFQVRSTQMHQQAEFGLAAHWSYKESHRTASSLG------WISGNKDADISVPTTDKGAPGKARVPDSVTSGPELVDWLHRELQERKVFVFGPDKKIWELDKGSATAGDVLGRSYMQ--RFYEGAVLHDRRRTGPSGTRGQDSAWVNGREVDASYLLKNGDVFDVQAA 936
             V+GV+DAVA+R VL A++  GE+ E +++R++ LCY AMSV +K+YP  + R KDY+++PKPNGYQSLH+T  V   P     +   R    E QVRS  MH +AE+G AAHWSYK     A + G      W S ++        T   +P  A VPDSV+SG ELV WLH EL++RKVFVFGPD  IWELDK SATA +VLGRS+    R  +G            G +G     VNG+ V   Y  KNGDV D+  A
Sbjct:  387 GVDGVYDAVALRAVLKAKRLPGETEEDHEERSKQLCYHAMSVAKKMYPSVEGRCKDYVMRPKPNGYQSLHSTHEVSVSPAAAASAGGERRTHFELQVRSASMHHKAEYGHAAHWSYKSDDGGAKAGGVGERRSWRSYDRLKAAGARRTGIDSPATA-VPDSVSSGKELVTWLHLELRQRKVFVFGPDNLIWELDKASATAENVLGRSHAAGIRLIDGGAA--------GGKKG--ITLVNGKAVPRHYAFKNGDVLDLDLA 636          
BLAST of mRNA_L-elsbetiae_contig14.2991.1 vs. uniprot
Match: A0A836CJV0_9STRA (RelA_SpoT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJV0_9STRA)

HSP 1 Score: 174 bits (441), Expect = 7.700e-43
Identity = 108/263 (41.06%), Postives = 144/263 (54.75%), Query Frame = 1
Query:  169 MMCTQVNVEGVFDAVAIRLVLDARKWQGESAESYKQRTEDLCYQAMSVIQKLYPWSQLRLKDYIVKPKPNGYQSLHATQLVPDVTDMSRHGRSVA----VEFQVRSTQMHQQAEFGLAAHWSYKESHRTASSLGWISGNKDADISVPTTDKGAPGKAR----VPDSVTSGPELVDWLHRELQERKVFVFGPDKKIWELDKGSATAGDVLGRSYMQRFYEGAVLHDRRRTGPSGTRGQDSAWVNGREVDASYLLKNGDVFDVQA 933
            M+ T+  +  V DAVA+R+V  AR+  G+    Y  R+  LC+ AM ++++LYP  + R KDY+  PK NGY+SLHAT L+P  +D S  G  +A     E Q+RS +MHQQA FG+A+H+SYK       S+ W++    A              +     VP  +  G   V+WLH ELQ RKVFVFGPD  IW+LDK SATA DV  R  +QRFY  A        G  G+       V+G +V   Y L+NGD   V A
Sbjct:  395 MLRTRCALADVHDAVALRVVFKARRRAGDGDAEYAARSTALCHDAMRIVRRLYPTLEGRFKDYVAAPKANGYRSLHATALMPR-SDCSGGGADLAGAHPFEVQIRSFEMHQQASFGVASHFSYKGE----GSMDWLAKAAPAAXXXXXXXXXXXXASGWGFVVPAEIADGRAFVNWLHNELQSRKVFVFGPDGLIWDLDK-SATAADVARRVNIQRFYARAPR------GGGGSASSVEIMVHGHQVPRDYALRNGDAISVMA 645          
BLAST of mRNA_L-elsbetiae_contig14.2991.1 vs. uniprot
Match: A0A836CGU9_9STRA (RelA_SpoT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGU9_9STRA)

HSP 1 Score: 171 bits (433), Expect = 7.440e-42
Identity = 107/246 (43.50%), Postives = 134/246 (54.47%), Query Frame = 1
Query:  184 VNVEGVFDAVAIRLVLDARKWQGESAESYKQRTEDLCYQAMSVIQKLYPWSQLRLKDYIVKPKPNGYQSLHATQLVPDVTDMSRHGRSVAVEFQVRSTQMHQQAEFGLAAHWSYKESHRTASSLGWISGNKDADISVPTTDKGAPGKARVPDSVTSGPELVDWLHRELQERKVFVFGPDKKIWELDKGSATAGDVLGRSYMQRFYEGAVLHDRRRTGPSGTRGQDSAWVNGREVDASYLLKNGDVF 921
            V V  + DAVA+R+V  AR+   E+   Y+ R+E LCY+AM +++ LYP    R KDYI  PK NGY+SLH T L+    D          E QVR+ +MHQQAE+G AAHW YK    T     W++ + D+  +   T  GAP    VP     G   V+WLH ELQ RKV+VFGPD  IW+LDK SATA DV  R  +  FY       RR  G S         V G +V   YLL+NGD  
Sbjct:  402 VAVADIADAVALRVVFKARRLPAETDAQYESRSEALCYEAMRIVEGLYPTVTTRFKDYICAPKANGYRSLHTTALMQCDRDPDNVH---PFEVQVRTFEMHQQAEYGAAAHWGYKGEGSTE----WLASHADSPRA--RTIGGAPA---VPADFVDGRAFVNWLHSELQSRKVYVFGPDGLIWDLDK-SATAADVARRVSIANFYS------RRMRGRSSV----DIMVEGNQVPCDYLLRNGDAI 624          
BLAST of mRNA_L-elsbetiae_contig14.2991.1 vs. uniprot
Match: D7G5R6_ECTSI (GTP diphosphokinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R6_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 6.880e-28
Identity = 75/160 (46.88%), Postives = 89/160 (55.62%), Query Frame = 1
Query:  481 MHQQAEFGLAAHWSYKESHRTASSLG------WISGNKDADISVPTTDKGAPGKARVPDSVTSGPELVDWLHRELQERKVFVFGPDKKIWELDKGSATAGDVLGRSYMQ--RFYEGAVLHDRRRTGPSGTRGQDSAWVNGREVDASYLLKNGDVFDVQAA 936
            MH +AE+G AAHWSYK     A + G      W S ++        T   +P  A VPDSV+SG ELV WLH ELQ+RKVFVFGPD  IWELDK SATA +VLGRS+    R  +G         G +G        VNG+ V   Y  KNGDV D+  A
Sbjct:    1 MHHKAEYGHAAHWSYKSDDGGAKAGGVGERRSWRSYDRLKAAGARRTGMDSPATA-VPDSVSSGKELVTWLHLELQQRKVFVFGPDNLIWELDKASATAENVLGRSHAAGIRLIDGGAAG-----GKTGI-----TLVNGKAVPRHYAFKNGDVLDLDLA 149          
BLAST of mRNA_L-elsbetiae_contig14.2991.1 vs. uniprot
Match: F0YFY5_AURAN (GTP diphosphokinase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFY5_AURAN)

HSP 1 Score: 114 bits (285), Expect = 3.920e-23
Identity = 85/262 (32.44%), Postives = 130/262 (49.62%), Query Frame = 1
Query:  187 NVEGVFDAVAIRLVLDA-RKWQGESAESYKQRTEDLCYQAMSVIQKLYPWSQL-RLKDYIVKPKPNGYQSLHATQLVPDVTDMSRHGRSVAVEFQVRSTQMHQQAEFGLAAHWSYKESHRTASSLGWISGNKDAD----ISVPTTDKGAPGKARVPDSVTSGPELVDWLHRELQERKVFVFGPDKKIWELDKGSATAGDVLGRSYMQRFYEGAVLHDRRRTGPSGTRGQDSAWVNGREVDASYLLKNGDVFDVQAASRDRDE 954
            +++GV D VA+R+VL+  R    E  E++++R+  LCY  + ++Q+L     + R+KDYI  PKPNGYQSLHA+        + R      VE Q+R+  MH+ AE G+AAHW YK+   +   L      + AD    ++ P               + S  E V+ + +E+  ++VFVF  D +I +L +G AT  D     + +   + A                  A+VNG+EV  SY LKNGDV  V  +   R +
Sbjct:  237 DLDGVPDVVALRVVLEVPRDGAAEPLEAWRERSTWLCYHVLGLVQQLKGCEAVPRVKDYISFPKPNGYQSLHAS--------LRREAEDQVVEVQIRTAWMHEVAEHGMAAHWLYKDGLFSVEDLD--DDGEPADGRRGVAKPYAVSWLNSVKDWQHEIHSSREFVETIRKEVLGKRVFVFLRDGQILDLSRG-ATVLDAAFHIHTEIGLKVAT-----------------AYVNGQEVQLSYELKNGDVVSVSTSEDARPQ 470          
BLAST of mRNA_L-elsbetiae_contig14.2991.1 vs. uniprot
Match: A0A7S4E6P6_9STRA (GTP diphosphokinase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E6P6_9STRA)

HSP 1 Score: 114 bits (285), Expect = 6.800e-23
Identity = 86/270 (31.85%), Postives = 125/270 (46.30%), Query Frame = 1
Query:  187 NVEGVFDAVAIRLVLDA-RKWQGESAESYKQRTEDLCYQAMSVIQKLYPWSQL-RLKDYIVKPKPNGYQSLHATQLVPDVTDMSRHGRSVAVEFQVRSTQMHQQAEFGLAAHWSYKESHRTASSLGWISGNKDADISVPTTDKGAPGKARVP------------DSVTSGPELVDWLHRELQERKVFVFGPDKKIWELDKGSATAGDVLGRSYMQRFYEGAVLHDRRRTGPSGTRGQDSAWVNGREVDASYLLKNGDVFDVQAASRDRDE 954
            +++ V D VA+R+VLD  R    E+ E++++R   LCY  +  +Q L     + R+KDYI  PKPNGYQSLHA+ L        R      VE Q+R+  MH+ AE+G+AAHW YK+                A  S     +  P  +  P              + S  E V+ + RE+  ++VFVF  D +I +L KG+     VL  ++      G  L              D A +NG EV  SY L NGDV  ++ +   R +
Sbjct:  303 DLDEVPDVVAVRVVLDVPRASDQETPEAWRERGVQLCYHVLGAVQHLEDCEAVPRVKDYIAFPKPNGYQSLHASVL--------REPEDQVVEIQIRTRGMHEVAEYGMAAHWLYKDGLLEPGGEDATRRALCASASAAAVAEKRPRASAKPYALEWLNAIKDMQDIHSSREFVETIRREVLGKRVFVFLRDGRILDLSKGAT----VLDAAFSIHTDVGLHL--------------DRALINGHEVQLSYELHNGDVVSIKTSEDARPQ 546          
BLAST of mRNA_L-elsbetiae_contig14.2991.1 vs. uniprot
Match: A0A812ISJ9_SYMPI (SpoT protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812ISJ9_SYMPI)

HSP 1 Score: 111 bits (277), Expect = 1.570e-22
Identity = 84/269 (31.23%), Postives = 125/269 (46.47%), Query Frame = 1
Query:  187 NVEGVFDAVAIRLVLDARKWQGESAESYKQRTEDLCYQAMSVIQKLYPWSQL-RLKDYIVKPKPNGYQSLHATQLVPDVTDMSRHGRSVAVEFQVRSTQMHQQAEFGLAAHWSYKESHR----------TASSLGWISGNKDADISVPTTDKGAPGKARVPDSVTSGPELVDWLHRELQERKVFVFGPDKKIWELDKGSATAGDVLGRSYMQRFYEGAVLHDRRRTGPSGTRGQDSAWVNGREVDASYLLKNGDVFDVQAASRDRDEPR 960
            N++ + D +A+R+VLD ++  GES E +  R    CY A+++++KL  WS    LK+YI  PKPNGYQSLH T +         H   V +E Q+R+ QMH+ AE+G+AAHW YK+  R           +  + W+    D D           G  R         + V+ + R+   R+ FVF  D  I  L +G  TA D   + + +       LH               A +N ++V   Y L+NGD  ++   S D   PR
Sbjct:  137 NIDNIDDIIALRVVLDIQQLAGESDEDFANRGAGYCYHALTLVRKLPNWSGGDSLKNYIAFPKPNGYQSLHVTFI--------HHDAPVPLEIQIRTRQMHEVAEYGMAAHWIYKDEQRGDGEQKKSKMRSRRVAWLESLADKD-----------GDLR-----KDAQQFVEEVLRDELGRRCFVFLRDGTILNLSRG-CTALDAAFKIHSE-----VGLH------------MQHAVINDKKVPPFYQLQNGDRVNI-VTSDDAAPPR 362          
BLAST of mRNA_L-elsbetiae_contig14.2991.1 vs. uniprot
Match: A0A399E0Q8_9DEIN (GTP pyrophosphokinase n=5 Tax=Meiothermus TaxID=65551 RepID=A0A399E0Q8_9DEIN)

HSP 1 Score: 113 bits (283), Expect = 2.040e-22
Identity = 78/254 (30.71%), Postives = 118/254 (46.46%), Query Frame = 1
Query:  187 NVEGVFDAVAIRLVLDARKWQGESAESYKQRTEDLCYQAMSVIQKLYPWSQLRLKDYIVKPKPNGYQSLHATQLVPDVTDMSRHGRSVAVEFQVRSTQMHQQAEFGLAAHWSYKESHRTASSL----GWISGNKDADISVPTTDKGAPGKARVPDSVTSGPELVDWLHRELQERKVFVFGPDKKIWELDKGSATAGDVLGRSYMQRFYEGAVLHDRRRTGPSGTRGQDSAWVNGREVDASYLLKNGDVFDVQAA 936
             +E ++D +A+R++LD R  QG+  E    R + +CY  + ++  L+     R+KDYI  PKPNGYQSLH T +  +          + +E Q+R+ +MH+ AEFG+AAHW YKE       L    GW+   +D                      +S  + V+ + +EL   +VFVF P  KI  L KGS+         +    +     H               A VNGR V  SY L+NG++ ++  A
Sbjct:  286 TIEQIYDLLALRVILDPR--QGQDPEETSLREKQVCYHVLGLVHALWQPIPGRVKDYIAVPKPNGYQSLHTTVIAVN---------GLPLEVQIRTREMHRVAEFGVAAHWLYKEGVTDPEELRRRVGWLKSIQDWQ-----------------QEYSSSRDFVEAVTKELLGDRVFVFTPKGKIINLPKGSSPV------DFAYHIHTEVGHH------------MVGAKVNGRIVPLSYELQNGEIVEILTA 493          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14.2991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVR6_ECTSI5.610e-12274.91Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohyd... [more]
A0A6H5KUK5_9PHAE5.250e-8451.93RelA_SpoT domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JUF6_9PHAE2.210e-5446.74RelA_SpoT domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CJV0_9STRA7.700e-4341.06RelA_SpoT domain-containing protein (Fragment) n=1... [more]
A0A836CGU9_9STRA7.440e-4243.50RelA_SpoT domain-containing protein n=1 Tax=Tribon... [more]
D7G5R6_ECTSI6.880e-2846.88GTP diphosphokinase n=1 Tax=Ectocarpus siliculosus... [more]
F0YFY5_AURAN3.920e-2332.44GTP diphosphokinase (Fragment) n=1 Tax=Aureococcus... [more]
A0A7S4E6P6_9STRA6.800e-2331.85GTP diphosphokinase n=2 Tax=Pelagomonas calceolata... [more]
A0A812ISJ9_SYMPI1.570e-2231.23SpoT protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
A0A399E0Q8_9DEIN2.040e-2230.71GTP pyrophosphokinase n=5 Tax=Meiothermus TaxID=65... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14contigL-elsbetiae_contig14:74664..79213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score395.2
Seed ortholog evalue2.9e-107
Seed eggNOG ortholog2880.D7FVR6
KEGG rclassRC00002,RC00078
KEGG koko:K00951
KEGG ReactionR00429
KEGG Pathwayko00230,map00230
Hectar predicted targeting categoryother localisation
EggNOG free text desc.HD domain containing 3
EggNOG OGsCOG0317@1,KOG1157@2759
EC2.7.6.5
COG Functional cat.KT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionguanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
Ec32 orthologEc-03_003250.1
Exons6
Model size1989
Cds size954
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14.2991.1prot_L-elsbetiae_contig14.2991.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14 75531..79045 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.3766382-UTR-L-elsbetiae_contig14:74663..755301622815552.3766382-UTR-L-elsbetiae_contig14:74663..75530Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14 74664..75530 -
1691682955.1436338-UTR-L-elsbetiae_contig14:74663..755301691682955.1436338-UTR-L-elsbetiae_contig14:74663..75530Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14 74664..75530 -
1622815552.4653182-UTR-L-elsbetiae_contig14:79045..792131622815552.4653182-UTR-L-elsbetiae_contig14:79045..79213Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14 79046..79213 -
1691682955.2133858-UTR-L-elsbetiae_contig14:79045..792131691682955.2133858-UTR-L-elsbetiae_contig14:79045..79213Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14 79046..79213 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.3873513-CDS-L-elsbetiae_contig14:75530..757701622815552.3873513-CDS-L-elsbetiae_contig14:75530..75770Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14 75531..75770 -
1691682955.154034-CDS-L-elsbetiae_contig14:75530..757701691682955.154034-CDS-L-elsbetiae_contig14:75530..75770Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14 75531..75770 -
1622815552.3994775-CDS-L-elsbetiae_contig14:76468..766511622815552.3994775-CDS-L-elsbetiae_contig14:76468..76651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14 76469..76651 -
1691682955.1619136-CDS-L-elsbetiae_contig14:76468..766511691682955.1619136-CDS-L-elsbetiae_contig14:76468..76651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14 76469..76651 -
1622815552.4168804-CDS-L-elsbetiae_contig14:77197..772871622815552.4168804-CDS-L-elsbetiae_contig14:77197..77287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14 77198..77287 -
1691682955.1736977-CDS-L-elsbetiae_contig14:77197..772871691682955.1736977-CDS-L-elsbetiae_contig14:77197..77287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14 77198..77287 -
1622815552.42916-CDS-L-elsbetiae_contig14:77628..777721622815552.42916-CDS-L-elsbetiae_contig14:77628..77772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14 77629..77772 -
1691682955.1829457-CDS-L-elsbetiae_contig14:77628..777721691682955.1829457-CDS-L-elsbetiae_contig14:77628..77772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14 77629..77772 -
1622815552.4404862-CDS-L-elsbetiae_contig14:77923..780881622815552.4404862-CDS-L-elsbetiae_contig14:77923..78088Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14 77924..78088 -
1691682955.1909251-CDS-L-elsbetiae_contig14:77923..780881691682955.1909251-CDS-L-elsbetiae_contig14:77923..78088Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14 77924..78088 -
1622815552.4508882-CDS-L-elsbetiae_contig14:78913..790451622815552.4508882-CDS-L-elsbetiae_contig14:78913..79045Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14 78914..79045 -
1691682955.199174-CDS-L-elsbetiae_contig14:78913..790451691682955.199174-CDS-L-elsbetiae_contig14:78913..79045Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14 78914..79045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14.2991.1

>prot_L-elsbetiae_contig14.2991.1 ID=prot_L-elsbetiae_contig14.2991.1|Name=mRNA_L-elsbetiae_contig14.2991.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=318bp
MMCTQVNVEGVFDAVAIRLVLDARKWQGESAESYKQRTEDLCYQAMSVIQ
KLYPWSQLRLKDYIVKPKPNGYQSLHATQLVPDVTDMSRHGRSVAVEFQV
RSTQMHQQAEFGLAAHWSYKESHRTASSLGWISGNKDADISVPTTDKGAP
GKARVPDSVTSGPELVDWLHRELQERKVFVFGPDKKIWELDKGSATAGDV
LGRSYMQRFYEGAVLHDRRRTGPSGTRGQDSAWVNGREVDASYLLKNGDV
FDVQAASRDRDEPRAARKSARKSARKSTWQGASRDAPGVDAPAKPSSSKP
DSSNIIKEPEKRTPQVG*
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mRNA from alignment at L-elsbetiae_contig14:74664..79213-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14.2991.1 ID=mRNA_L-elsbetiae_contig14.2991.1|Name=mRNA_L-elsbetiae_contig14.2991.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4550bp|location=Sequence derived from alignment at L-elsbetiae_contig14:74664..79213- (Laminarionema elsbetiae ELsaHSoW15)
ACTCAGAGTGCACTTGAGTGTTTCAAGACAGCGATGTATTTTTGACGATC CACCATGAATTATGCTAGAGACGGCTGACCGCGATGATCATGCCAGCACT TTTCAACGTCTATAGTCATCACAACTACATCGACTTATGTTTTGATTGTG GTATTGAACTATCTGCACATGATGTGTACTCAGGTCAACGTGGAAGGCGT GTTCGATGCCGTGGCAATTCGGCTTGTATTGGATGCACGAAAGTGGCAAG GGGAATCAGCAGAATCTTATAAACAGCGCACGGAAGACCTCTGCTACCAG GTAAATTTCTCCATGTTTACCAGCGATAAACAGGATTTGTGGCACGCAGT TTTCTGATTGGTCTAAAAATCTGCGGCGGAATTTCGAAACCGGCACGTCC GAAGATCCTTGGGCGACGGGTGGCGTCATCCACGGTCACTCGGGCGGACG AAATCTTGGGATATAACCTGATGATTTGACACGTTGCTGAGTAGAAAAGG GAGAGAGATGAATCTGCCGACCGATCCGCGAGGTTTGTTTGTTGATGGAG TATGTATCCATCGCGGAGAATCCTAGCCTTTGCTACCTCATGGCATTATT CCTTCCGCGCGATGGCTGATCGTCCCTTCAAACACATTACTAGTACCAAT GATCTGTTGGGCCCGTACCATTTCGGTCGATCCGTCGGGTGTTTGGTTGT CCTATGTGCTCGCGTCCACACTACAAGATTTTCCGGTACCAACGAGCACG AGTTCCCCAGTGTTGTACTTGAGTGGGGAGGGAGCGTGAGCAATAGGCAC GATCAAAATAAGGAGTCCTATGATTTCACATGTGTTGTGAAGTGCCACGC GCAAAGCTCGACTGGTTGGTATTGACACCGATCCACTGCGACAAAACTCA AGATCCGTGGCCTTGTTGATATGGAATGCACGTGCCTGGTGGTTTTGATT TACTTCTATCGTTTGGGTTCAAGTCGGTGGAGATCATGCCGGCTATGCAG GTGCTGCATATGGAGCATGCACATGGCGCCTTTTGAAATAGAAGTTTGTC CGCGTTGCAGACTTAAGCTGTTCTCGTGCGGCTCCCCTGGACATGTCCGA TATTCCCGTTTTACTGATCCAATAGGCGATGTCCGTGATCCAAAAGCTCT ATCCGTGGTCCCAGCTACGCCTCAAGGACTACATCGTCAAGCCGAAGCCC AATGGCTACCAGAGCCTGCACGCAACACAACTTGTGCCGGATGTCACGGA CATGTCTAGGCATGGCCGGTCCGTCGCCGTTGAGTTCCAGGTATGCGTGT GGCGCTGTTTCCACAGTACTAGTCCGAACCAGTGTTGTCGTGTCTGCAAC TTCAACGCTGGAACTACAAGTGTTTTCATAGCGGTTAAATAGTCATCCGT ACGTCGCATAACATTTTGCGATTTCGTCGTTGCCGCCACAGGTCCGTTCT ACACAGATGCACCAGCAAGCCGAATTCGGTCTCGCGGCGCACTGGAGCTA CAAGGAGTCCCACCGGACGGCGAGTAGCCTGGGCTGGATAAGTGGGAACA AGGACGCTGATATTTCAGTCCCAACAACGGACAAGGTTAGCATGCACCTT CTGCAAAACACATGTGAACACAAAGATAGCGTGCAAAAAGAAAGTGCCGG ACATGGACGCGCTGTGAGCTCGTCAGGTCCAACTCGACCGTAAGGATTTG GACTACAGTGAAAGCGGCCGGTGTGATGCCTACACCGCTTGCTGTTGGCA AAAACGATAGCCACTGCTACATAGCCCAAAAAACAAGAACCCACTTTGTC ATCGACAGCCCCGTAGTATATTGATGCCTGTCATGTTGACTGATTTAGGG GGGGAGGGCATCATGTTTACTGTTATCTTTCGCTAAAAATAATTGCCTTC CTCTTACGGGCTTTGGTACTGGCTAGGGAGCCCCCGGAAAGGCCAGGGTA CCTGACTCAGTAACATCAGGACCCGAGCTTGTTGACTGGCTTCACCGAGA ACTTCAGGAACGCAAGGTAAGCAGTTCCAGCAACACGACTGGTGCACGAC AACAGTCAGTGTTTGGGCAGGTCGTGAAAGACACCCCCACATCACCCGCT CCTCTCATTCCATCATGCAGGACTCAAGAACCGTCCCGACCCGAAAAACA AAGTATCACCATTAGCACTTGTATCACCACATGCAGCTGTTGAGAGTGTC AGAAGAGACGTCCGGTCCCGTGATCTATCCACCTTTCCTGGTTATTTTTC CGTTCTTTCAAATCCCCACCTCGATGGTCTGTTCTAATTACGACCGGAAT TGCATTTGACATTTTAGGTCCAGGTGTGGTTTGTCTTGTTCTGAAATATT TGTTTGCCGGCTTCATGTGCTCTCACGTTTTGGAATTATTTTTCTGGTTG TTTGCGGGTTACTGGGGCAGAACCTCAGCATGTGGTATGCAGTCGGCCCC TCTTGGCATGACTTGAAGAGTGGGGAATTCATGCAGCATTATACGTGTAA CGGCCGGATGCCAGCCCAGCTGTGGTTGAGTTCTCTGTCCCCTTTGCGGT GCCATCTTGCAGGTTTTCGTGTTCGGGCCCGACAAGAAGATCTGGGAGCT GGACAAGGGTTCGGCCACTGCCGGAGACGTTTTGGGGCGGTCATACATGC AGAGGTTTTACGAGGGTGCGGTTTTGCACGACCGAAGAAGGACGGGGCCA TCGGGGACCAGAGGACAGGATTCGGCCTGGGTCAACGGACGAGAGGTGCG TACCGTCCGAAAAATGAAATTTGTGACGGCTAAATGTTTAACTTCTTAAG TTCAGTGTTCGCCGTTACGTATGGTAAAAGTAGTTGAGTGGACAGTAGAT ATCTTCCCGAGGTTATATCATGTTACTAAATATGTACAATACAAACCGTC GGGGTCCAAGGTCTATGTCATGTATGGCAACAGGTGCCAAACCTTGATAC ACCTCTCTGTTTATAGTGTTGCGCGGTGTGGCCAAAACGCTTGTCCGTTA TCACCGATCGCAACAGCAGACCAGTAAGAAAGTAGGATAGGTGTCGGTGA GTCACCGACGTGCGTGATATGTAGACAATGTTTATCTGGGTGTCACCGTT CTTAGCTCAGCACTGTCTGCGACACCTTACACGAGAAAGATCTGGCGAAA ACTCTTCGCTCTTTGAACACGCTTGCTCGAAGAACGCCGCAAGACACTTC GCAGAAGGGTGATGTGGATGATTGTCTGACAGATACAGACGTACGTGTCA CGTGTTGCTTTCGTGGAACAGCACCACCCACAGTCCCGCACAAGGCGATT GATTTCTCAGTTGCCTCCATCGCTCCAACGACTTTGGTTCTTTTGGTCGG TTTTTGTCCCCGCACTCTTGTTCCGGTGTCTTCGGTCGCTTTTGATTGTG TAATTCGATCCGCCAATGATGGGCAAAATATTTTTGGCGCCAGGTGGACG CAAGTTATCTTCTCAAAAACGGCGATGTGTTTGATGTGCAAGCTGCGTCA CGAGATCGAGACGAGCCAAGGGCAGCGCGAAAATCTGCGCGAAAATCCGC GCGAAAATCCACGTGGCAAGGCGCTTCTCGAGACGCACCAGGGGTGGATG CGCCTGCGAAGCCCAGCAGCTCCAAGCCGGACTCCAGCAACATAATCAAA GAGCCCGAAAAGAGGACGCCGCAGGTCGGCTGAAAGGCGCTCTCATCACC TCAACCCAAACAGCACGCTGGCTTTTGACCGAGGCACCTACCTACAGTAG ATAGAGACATAGATAGCGGTTGGATGTGCTTGTGTGTAAAACGATCAATT TAGCACCCTTTTTTTGTACCCCTTGGCATGTGTTCCGTACGAAACACAGT AGTAGTGAGTTGTACAGGCGGGCTAGAGTTTCGAGCATGCAGTGTTGGCG TGTGTGTTCCATGTAAATTTTGTGTGTGGTGCTTTGTTCTCCCCAATTTG TGGTGATGGCATGTGAAGCGTTGAATTCGGAAAAGTTGGCGCGTTCACGC CTTTTTGCCACACGTGCGTAAGCGTAGATGACTTTGAAGGTTTCCGCCTT CGCACGCTTAGGCCATACACGATGGTACCATAAATGCGTGAGAAGGCAGC GGCAGCGTCGTTGATGTGAAGATGAACGTTTAAGTATCAGGGAGGTGCTC ATTTTTTGTAGGCCTTGTATGAGATTTGTGTTTCCATGCATGCGCTAGTG TGCGGACACTATAAGCTAAGGTAACGGTGGAGGCCCGTTTCATGTAGCGC CTAGCCGGCTTTTGCGCGACTCGGTTTATTTGTACGTAGAGTAGACTATG TTAAGCAGGGCTTGCTTGTATAAACTGGTAGGATAAATACCTCGTAGCCC TTGTTTGCACGGACTAGATACTGTAAGCACCTTCAATTTCGGCGAGCGCG GTTATGGCTTAGCCTGGAGCCTTCCGTGTTCCCCGTGGTTCGGCGGGAAG AGACCAGGAGTTTAGATTCTTGCTTCGAAATATGATCCGGTCCGTGCACA ACAATTTGTCCAAAAAAATCCAGGCGGGGTTGACATTTTTCCTCTGCACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14:74664..79213-

>mRNA_L-elsbetiae_contig14.2991.1 ID=mRNA_L-elsbetiae_contig14.2991.1|Name=mRNA_L-elsbetiae_contig14.2991.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1908bp|location=Sequence derived from alignment at L-elsbetiae_contig14:74664..79213- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGTGTACTCAGGTCAACGTGGAAGGCGTGTTCGATGCCGTGGCAAT
TCGGCTTGTATTGGATGCACGAAAGTGGCAAGGGGAATCAGCAGAATCTT
ATAAACAGCGCACGGAAGACCTCTGCTACCAGATGATGTGTACTCAGGTC
AACGTGGAAGGCGTGTTCGATGCCGTGGCAATTCGGCTTGTATTGGATGC
ACGAAAGTGGCAAGGGGAATCAGCAGAATCTTATAAACAGCGCACGGAAG
ACCTCTGCTACCAGGCGATGTCCGTGATCCAAAAGCTCTATCCGTGGTCC
CAGCTACGCCTCAAGGACTACATCGTCAAGCCGAAGCCCAATGGCTACCA
GAGCCTGCACGCAACACAACTTGTGCCGGATGTCACGGACATGTCTAGGC
ATGGCCGGTCCGTCGCCGTTGAGTTCCAGGCGATGTCCGTGATCCAAAAG
CTCTATCCGTGGTCCCAGCTACGCCTCAAGGACTACATCGTCAAGCCGAA
GCCCAATGGCTACCAGAGCCTGCACGCAACACAACTTGTGCCGGATGTCA
CGGACATGTCTAGGCATGGCCGGTCCGTCGCCGTTGAGTTCCAGGTCCGT
TCTACACAGATGCACCAGCAAGCCGAATTCGGTCTCGCGGCGCACTGGAG
CTACAAGGAGTCCCACCGGACGGCGAGTAGCCTGGGCTGGATAAGTGGGA
ACAAGGACGCTGATATTTCAGTCCCAACAACGGACAAGGTCCGTTCTACA
CAGATGCACCAGCAAGCCGAATTCGGTCTCGCGGCGCACTGGAGCTACAA
GGAGTCCCACCGGACGGCGAGTAGCCTGGGCTGGATAAGTGGGAACAAGG
ACGCTGATATTTCAGTCCCAACAACGGACAAGGGAGCCCCCGGAAAGGCC
AGGGTACCTGACTCAGTAACATCAGGACCCGAGCTTGTTGACTGGCTTCA
CCGAGAACTTCAGGAACGCAAGGGAGCCCCCGGAAAGGCCAGGGTACCTG
ACTCAGTAACATCAGGACCCGAGCTTGTTGACTGGCTTCACCGAGAACTT
CAGGAACGCAAGGTTTTCGTGTTCGGGCCCGACAAGAAGATCTGGGAGCT
GGACAAGGGTTCGGCCACTGCCGGAGACGTTTTGGGGCGGTCATACATGC
AGAGGTTTTACGAGGGTGCGGTTTTGCACGACCGAAGAAGGACGGGGCCA
TCGGGGACCAGAGGACAGGATTCGGCCTGGGTCAACGGACGAGAGGTTTT
CGTGTTCGGGCCCGACAAGAAGATCTGGGAGCTGGACAAGGGTTCGGCCA
CTGCCGGAGACGTTTTGGGGCGGTCATACATGCAGAGGTTTTACGAGGGT
GCGGTTTTGCACGACCGAAGAAGGACGGGGCCATCGGGGACCAGAGGACA
GGATTCGGCCTGGGTCAACGGACGAGAGGTGGACGCAAGTTATCTTCTCA
AAAACGGCGATGTGTTTGATGTGCAAGCTGCGTCACGAGATCGAGACGAG
CCAAGGGCAGCGCGAAAATCTGCGCGAAAATCCGCGCGAAAATCCACGTG
GCAAGGCGCTTCTCGAGACGCACCAGGGGTGGATGCGCCTGCGAAGCCCA
GCAGCTCCAAGCCGGACTCCAGCAACATAATCAAAGAGCCCGAAAAGAGG
ACGCCGCAGGTCGGCTGAGTGGACGCAAGTTATCTTCTCAAAAACGGCGA
TGTGTTTGATGTGCAAGCTGCGTCACGAGATCGAGACGAGCCAAGGGCAG
CGCGAAAATCTGCGCGAAAATCCGCGCGAAAATCCACGTGGCAAGGCGCT
TCTCGAGACGCACCAGGGGTGGATGCGCCTGCGAAGCCCAGCAGCTCCAA
GCCGGACTCCAGCAACATAATCAAAGAGCCCGAAAAGAGGACGCCGCAGG
TCGGCTGA
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