mRNA_L-elsbetiae_contig13992.2980.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13992.2980.1
Unique NamemRNA_L-elsbetiae_contig13992.2980.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13992.2980.1 vs. uniprot
Match: D7G4Q9_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q9_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 5.460e-24
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 MGPEELRQRMRLLDNEIRIMRSDQDRIRHESTTQRDKIKENKEKIKLNKQLPWLVGNVVEV 183
            MG EELRQRMRLLDNEIRIMRSDQDRIRHES TQ+DKIKENK    LNKQLPWLVGNVVE+
Sbjct:   41 MGSEELRQRMRLLDNEIRIMRSDQDRIRHESATQKDKIKENKXXXXLNKQLPWLVGNVVEI 101
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BLAST of mRNA_L-elsbetiae_contig13992.2980.1 vs. uniprot
Match: A0A836CGA2_9STRA (26S protease regulatory subunit 6A-A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.680e-23
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 MGPEELRQRMRLLDNEIRIMRSDQDRIRHESTTQRDKIKENKEKIKLNKQLPWLVGNVVEV 183
            MG EELRQRMRLLDNEIRIMRSD +RIRHES TQR+KIKEN   +KLNKQLPWLVGNV+EV
Sbjct:   24 MGNEELRQRMRLLDNEIRIMRSDMERIRHESNTQREKIKENXXXVKLNKQLPWLVGNVIEV 84
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BLAST of mRNA_L-elsbetiae_contig13992.2980.1 vs. uniprot
Match: A0A2D4BEW0_PYTIN (26S protease regulatory subunit 6A like A n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BEW0_PYTIN)

HSP 1 Score: 92.8 bits (229), Expect = 8.950e-21
Identity = 47/61 (77.05%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 MGPEELRQRMRLLDNEIRIMRSDQDRIRHESTTQRDKIKENKEKIKLNKQLPWLVGNVVEV 183
            M  EE+RQRMRLLDNE+RIMRSD  RI HES TQR++IKEN EK+KLNKQLP+LVGNVVE+
Sbjct:   32 MSNEEIRQRMRLLDNEVRIMRSDVQRINHESNTQRERIKENNEKVKLNKQLPYLVGNVVEI 92
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BLAST of mRNA_L-elsbetiae_contig13992.2980.1 vs. uniprot
Match: A0A7S2UXQ0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXQ0_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.020e-20
Identity = 47/61 (77.05%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 MGPEELRQRMRLLDNEIRIMRSDQDRIRHESTTQRDKIKENKEKIKLNKQLPWLVGNVVEV 183
            M  EELRQR+RLLDN+IRIMRSD  RI HE+ TQR+KIKEN +KIKLNKQLP+LVGNVVE+
Sbjct:   26 MSTEELRQRIRLLDNDIRIMRSDMQRINHETNTQREKIKENNDKIKLNKQLPYLVGNVVEI 86
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BLAST of mRNA_L-elsbetiae_contig13992.2980.1 vs. uniprot
Match: K3WL48_GLOUD (AAA domain-containing protein n=23 Tax=Oomycota TaxID=4762 RepID=K3WL48_GLOUD)

HSP 1 Score: 89.4 bits (220), Expect = 2.040e-19
Identity = 46/61 (75.41%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 MGPEELRQRMRLLDNEIRIMRSDQDRIRHESTTQRDKIKENKEKIKLNKQLPWLVGNVVEV 183
            M  EELRQR+RLLDN+IRIMRSD  RI HES +QR++IKEN EK+KLNKQLP+LVGNVVE+
Sbjct:   24 MSNEELRQRIRLLDNDIRIMRSDIQRINHESNSQRERIKENNEKVKLNKQLPYLVGNVVEI 84
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BLAST of mRNA_L-elsbetiae_contig13992.2980.1 vs. uniprot
Match: A0A1W0A535_9STRA (26S protease regulatory subunit 6A-A n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A535_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 5.110e-19
Identity = 46/61 (75.41%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 MGPEELRQRMRLLDNEIRIMRSDQDRIRHESTTQRDKIKENKEKIKLNKQLPWLVGNVVEV 183
            M  +EL+QRMRLLDNEIRIMRSD  RI HES +QR++IKEN EK+KLNKQLP+LVGNVVE+
Sbjct:  376 MTTDELKQRMRLLDNEIRIMRSDITRINHESQSQRERIKENNEKVKLNKQLPYLVGNVVEI 436
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BLAST of mRNA_L-elsbetiae_contig13992.2980.1 vs. uniprot
Match: A0A024UII9_9STRA (26S protease regulatory subunit 6A n=13 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UII9_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.390e-19
Identity = 46/61 (75.41%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 MGPEELRQRMRLLDNEIRIMRSDQDRIRHESTTQRDKIKENKEKIKLNKQLPWLVGNVVEV 183
            M  +EL+QR+RLLDNEIRIMRSD  RI HES TQR++IKEN EK+KLNKQLP+LVGNVVE+
Sbjct:   26 MTNDELKQRIRLLDNEIRIMRSDITRINHESQTQRERIKENNEKVKLNKQLPYLVGNVVEI 86
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BLAST of mRNA_L-elsbetiae_contig13992.2980.1 vs. uniprot
Match: A0A397CPI0_9STRA (ABC transporter domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CPI0_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 6.890e-19
Identity = 46/61 (75.41%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 MGPEELRQRMRLLDNEIRIMRSDQDRIRHESTTQRDKIKENKEKIKLNKQLPWLVGNVVEV 183
            M  +EL+QR+RLLDNEIRIMRSD  RI HES TQR++IKEN EK+KLNKQLP+LVGNVVE+
Sbjct:   26 MTNDELKQRIRLLDNEIRIMRSDITRINHESQTQRERIKENNEKVKLNKQLPYLVGNVVEI 86
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BLAST of mRNA_L-elsbetiae_contig13992.2980.1 vs. uniprot
Match: A0A024FZH3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FZH3_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 6.950e-19
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 MGPEELRQRMRLLDNEIRIMRSDQDRIRHESTTQRDKIKENKEKIKLNKQLPWLVGNVVEV 183
            M  EELRQR+RL+DN+IRIMRSD  RI HES +QR++IKEN EK+K+NKQLP+LVGNVVE+
Sbjct:  326 MSNEELRQRIRLMDNDIRIMRSDMQRIDHESNSQRERIKENNEKVKMNKQLPYLVGNVVEI 386
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BLAST of mRNA_L-elsbetiae_contig13992.2980.1 vs. uniprot
Match: A0A3R7B275_9STRA (AAA domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7B275_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 6.960e-19
Identity = 46/61 (75.41%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 MGPEELRQRMRLLDNEIRIMRSDQDRIRHESTTQRDKIKENKEKIKLNKQLPWLVGNVVEV 183
            M  +EL+QR+RLLDNEIRIMRSD  RI HES TQR++IKEN EK+KLNKQLP+LVGNVVE+
Sbjct:   26 MTNDELKQRIRLLDNEIRIMRSDITRINHESQTQRERIKENNEKVKLNKQLPYLVGNVVEI 86
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13992.2980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4Q9_ECTSI5.460e-2486.89AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CGA2_9STRA4.680e-2383.6126S protease regulatory subunit 6A-A n=1 Tax=Tribo... [more]
A0A2D4BEW0_PYTIN8.950e-2177.0526S protease regulatory subunit 6A like A n=1 Tax=... [more]
A0A7S2UXQ0_9STRA3.020e-2077.05Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K3WL48_GLOUD2.040e-1975.41AAA domain-containing protein n=23 Tax=Oomycota Ta... [more]
A0A1W0A535_9STRA5.110e-1975.4126S protease regulatory subunit 6A-A n=1 Tax=Thrau... [more]
A0A024UII9_9STRA5.390e-1975.4126S protease regulatory subunit 6A n=13 Tax=Saprol... [more]
A0A397CPI0_9STRA6.890e-1975.41ABC transporter domain-containing protein (Fragmen... [more]
A0A024FZH3_9STRA6.950e-1972.13Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A3R7B275_9STRA6.960e-1975.41AAA domain-containing protein n=5 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13992contigL-elsbetiae_contig13992:1094..1538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue1.7e-19
Seed eggNOG ortholog2880.D7G4Q9
KEGG koko:K03065
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000502,GO:0000731,GO:0002020,GO:0002082,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0005829,GO:0006139,GO:0006140,GO:0006163,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006914,GO:0006919,GO:0006950,GO:0006974,GO:0007034,GO:0007041,GO:0008047,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009109,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010918,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016504,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0018193,GO:0018196,GO:0018279,GO:0019058,GO:0019079,GO:0019219,GO:0019220,GO:0019222,GO:0019362,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019899,GO:0019902,GO:0019903,GO:0019904,GO:0019941,GO:0019985,GO:0022411,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030162,GO:0030163,GO:0030177,GO:0030234,GO:0030433,GO:0030554,GO:0030808,GO:0030810,GO:0030970,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031399,GO:0031401,GO:0031593,GO:0031625,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032509,GO:0032510,GO:0032527,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0032991,GO:0033036,GO:0033554,GO:0034098,GO:0034214,GO:0034404,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034976,GO:0035639,GO:0035800,GO:0035861,GO:0035966,GO:0035967,GO:0036094,GO:0036211,GO:0036435,GO:0036503,GO:0036513,GO:0042175,GO:0042176,GO:0042221,GO:0042287,GO:0042288,GO:0042325,GO:0042327,GO:0042391,GO:0042726,GO:0042728,GO:0042802,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043280,GO:0043281,GO:0043412,GO:0043413,GO:0043457,GO:0043467,GO:0043531,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044389,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045732,GO:0045838,GO:0045862,GO:0045935,GO:0045937,GO:0045981,GO:0046034,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046907,GO:0048193,GO:0048471,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051336,GO:0051345,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051788,GO:0051881,GO:0052547,GO:0052548,GO:0055086,GO:0060255,GO:0060828,GO:0061134,GO:0061136,GO:0061857,GO:0061919,GO:0062012,GO:0062013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070085,GO:0070647,GO:0070727,GO:0070841,GO:0070842,GO:0070887,GO:0071218,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0071712,GO:0071840,GO:0071897,GO:0071985,GO:0072387,GO:0072389,GO:0072521,GO:0072524,GO:0080090,GO:0090085,GO:0090263,GO:0090304,GO:0090734,GO:0097159,GO:0097352,GO:0097367,GO:0098772,GO:0098796,GO:0098827,GO:0140030,GO:1900371,GO:1900373,GO:1900542,GO:1900544,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901800,GO:1902494,GO:1903003,GO:1903004,GO:1903006,GO:1903007,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903513,GO:1903578,GO:1903580,GO:1903715,GO:1903862,GO:1904288,GO:1904949,GO:1905368,GO:1905369,GO:1990381,GO:1990730,GO:2000058,GO:2000060,GO:2000116,GO:2000152,GO:2000158,GO:2001056,GO:2001169,GO:2001171
EggNOG free text desc.Belongs to the AAA ATPase family
EggNOG OGsCOG1222@1,KOG0652@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051
Ec32 ortholog descriptionAAA ATPase domain
Ec32 orthologEc-20_000710.1
Exons2
Model size192
Cds size192
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815550.741455-CDS-L-elsbetiae_contig13992:1093..11831622815550.741455-CDS-L-elsbetiae_contig13992:1093..1183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13992 1094..1183 -
1691682954.0540345-CDS-L-elsbetiae_contig13992:1093..11831691682954.0540345-CDS-L-elsbetiae_contig13992:1093..1183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13992 1094..1183 -
1622815550.7535295-CDS-L-elsbetiae_contig13992:1436..15381622815550.7535295-CDS-L-elsbetiae_contig13992:1436..1538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13992 1437..1538 -
1691682954.0753396-CDS-L-elsbetiae_contig13992:1436..15381691682954.0753396-CDS-L-elsbetiae_contig13992:1436..1538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13992 1437..1538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13992.2980.1prot_L-elsbetiae_contig13992.2980.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13992 1094..1538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13992.2980.1

>prot_L-elsbetiae_contig13992.2980.1 ID=prot_L-elsbetiae_contig13992.2980.1|Name=mRNA_L-elsbetiae_contig13992.2980.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=64bp
MGPEELRQRMRLLDNEIRIMRSDQDRIRHESTTQRDKIKENKEKIKLNKQ
LPWLVGNVVEVGT*
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mRNA from alignment at L-elsbetiae_contig13992:1094..1538-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13992.2980.1 ID=mRNA_L-elsbetiae_contig13992.2980.1|Name=mRNA_L-elsbetiae_contig13992.2980.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=445bp|location=Sequence derived from alignment at L-elsbetiae_contig13992:1094..1538- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCCCGGAGGAGCTGCGACAACGCATGCGGCTGCTGGATAACGAGAT
CCGCATCATGCGGAGCGATCAAGACCGCATCCGACATGAGAGCACCACTC
AGGTCAGCCACTTGAACCGGAAGTCCCGCTGTCTCGTGTAACAGCGGCAG
GTTTTCACAGAGTCTGAATTGATTCGTGGACTGACTGGGTGGGTGGGTTC
TGGACCGAACACTCCCTTCCGTGCGCCTCTTCGCGTAAAAAAAGGCGATG
AGATAATTACTCAACCCCCGCCCCGTCTCTCGACGTTTGTGCTAACCGCC
AACGCTATCTTGTTCTTTCGTGTTTGTTGTGTGCCGCCGGCATCGCGTCC
TGTAGAGGGACAAGATCAAGGAGAACAAAGAGAAGATCAAGCTGAACAAG
CAGCTCCCGTGGCTGGTGGGAAACGTAGTTGAGGTGGGAACATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13992:1094..1538-

>mRNA_L-elsbetiae_contig13992.2980.1 ID=mRNA_L-elsbetiae_contig13992.2980.1|Name=mRNA_L-elsbetiae_contig13992.2980.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig13992:1094..1538- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCCCGGAGGAGCTGCGACAACGCATGCGGCTGCTGGATAACGAGAT
CCGCATCATGCGGAGCGATCAAGACCGCATCCGACATGAGAGCACCACTC
AGATGGGCCCGGAGGAGCTGCGACAACGCATGCGGCTGCTGGATAACGAG
ATCCGCATCATGCGGAGCGATCAAGACCGCATCCGACATGAGAGCACCAC
TCAGAGGGACAAGATCAAGGAGAACAAAGAGAAGATCAAGCTGAACAAGC
AGCTCCCGTGGCTGGTGGGAAACGTAGTTGAGGTGGGAACATGAAGGGAC
AAGATCAAGGAGAACAAAGAGAAGATCAAGCTGAACAAGCAGCTCCCGTG
GCTGGTGGGAAACGTAGTTGAGGTGGGAACATGA
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