mRNA_L-elsbetiae_contig1380.2874.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1380.2874.1
Unique NamemRNA_L-elsbetiae_contig1380.2874.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1380.2874.1 vs. uniprot
Match: D8LL68_ECTSI (Rab geranylgeranyl transferase component A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL68_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 3.930e-43
Identity = 76/93 (81.72%), Postives = 85/93 (91.40%), Query Frame = 2 
Query:  197 VACFEDDTDSFMQRKREFLFTNLPPVVLNQDFVCVEGTGGAVWRSSIQFSEFVCSEEGRRCLPLLGKSLLEISSGVGLGAIVAWHLGASPVVS 475
            VACFE DT+SFM R+R F+F  LPPVVLNQDFV VEGTGGAVWR SI+FSEFVCSEEGRRCLPL GKS+LEISSG+GLGAIV+W+LGASPVV+
Sbjct:   19 VACFERDTESFMLRRRRFMFPGLPPVVLNQDFVSVEGTGGAVWRPSIEFSEFVCSEEGRRCLPLAGKSVLEISSGLGLGAIVSWNLGASPVVA 111
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1380.2874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LL68_ECTSI3.930e-4381.72Rab geranylgeranyl transferase component A n=2 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1380contigL-elsbetiae_contig1380:5977..8244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size948
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1380.2874.1prot_L-elsbetiae_contig1380.2874.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1380 6134..7792 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.1453907-UTR-L-elsbetiae_contig1380:5976..61331622815541.1453907-UTR-L-elsbetiae_contig1380:5976..6133Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1380 5977..6133 +
1691682948.9851391-UTR-L-elsbetiae_contig1380:5976..61331691682948.9851391-UTR-L-elsbetiae_contig1380:5976..6133Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1380 5977..6133 +
1622815541.197377-UTR-L-elsbetiae_contig1380:7792..82441622815541.197377-UTR-L-elsbetiae_contig1380:7792..8244Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1380 7793..8244 +
1691682949.01318-UTR-L-elsbetiae_contig1380:7792..82441691682949.01318-UTR-L-elsbetiae_contig1380:7792..8244Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1380 7793..8244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.158813-CDS-L-elsbetiae_contig1380:6133..62481622815541.158813-CDS-L-elsbetiae_contig1380:6133..6248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1380 6134..6248 +
1691682948.9970558-CDS-L-elsbetiae_contig1380:6133..62481691682948.9970558-CDS-L-elsbetiae_contig1380:6133..6248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1380 6134..6248 +
1622815541.182043-CDS-L-elsbetiae_contig1380:7568..77921622815541.182043-CDS-L-elsbetiae_contig1380:7568..7792Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1380 7569..7792 +
1691682949.005128-CDS-L-elsbetiae_contig1380:7568..77921691682949.005128-CDS-L-elsbetiae_contig1380:7568..7792Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1380 7569..7792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1380.2874.1

>prot_L-elsbetiae_contig1380.2874.1 ID=prot_L-elsbetiae_contig1380.2874.1|Name=mRNA_L-elsbetiae_contig1380.2874.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MEVAAESSEEEDEVACFEDDTDSFMQRKREFLFTNLPPVVLNQDFVCVEG
TGGAVWRSSIQFSEFVCSEEGRRCLPLLGKSLLEISSGVGLGAIVAWHLG
ASPVVSPPCCVP*
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mRNA from alignment at L-elsbetiae_contig1380:5977..8244+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1380.2874.1 ID=mRNA_L-elsbetiae_contig1380.2874.1|Name=mRNA_L-elsbetiae_contig1380.2874.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2268bp|location=Sequence derived from alignment at L-elsbetiae_contig1380:5977..8244+ (Laminarionema elsbetiae ELsaHSoW15)
GAGAGCTTTGGCGTGCCCCCGGTCAGCCAGCTCGCGTGGCTGGTGGGAGA
AGAGCCAGCCGGCATACTATACCGAAGCGCGAATCGCAGAGTACGCGCCG
GTGCAAGGAGAACTGAACGAGCGGGGGAGAGAAATTAAGAAAGAGGTTAG
AAGACGAATGGAGGTAGCCGCAGAATCATCGGAGGAGGAGGACGAGGTAG
CATGCTTCGAGGATGATACTGACAGCTTCATGCAACGAAAGCGAGAGTTT
CTGTTCACCAACCTTCCACCAGGTGACAGGTTTTCAACATCAGCTAACCA
CACAACAGGTTTTCATGTGTCGTATTTACACTAAATATCTCAATATAAAG
ATACATACTCCTTCCTACATACAGAGGTCTGCGAGTTGCAATAAGCGACG
CACCATACATACAACCGCACACCGTATTTTGGGCATCTTCTCGGCGACAC
AGCCAAGCCACGTGTGCCCTTATGGTCATTGTGCAACGCCATTGTAAAGG
CAGCAGGGTTTTACGGTGGGTGCATAGTCACGTGAAAGCCGCAAAGACGC
GAGCGACACCCGGAGAGCGCACGAAAAAAAAGTCAACCTCGGTTGTGTCA
CGTCCAGGGGCCAAAAAGCTGAAAGAGCGCCACAGTAGTGTCAAGGTACA
GAGCGGTGTCGGACGTGAACGGAGTTTTTTTTTCTTTCTGTTCCATGGAT
GTGCTTTCCGCGCCGTTTCACCGTGTATTCAATCTTCGAAGCACAGCAAA
GACTATCTATGTCCCGTGTGTAGCCAGGATACAATCTAGATATTTACCTA
GTTTCCCTTTCAGACGTTGCTCATCAAAGGGACACCATTCAGCGGGTGAA
GCAAGAAAACGGAACACGCGTCCGATACCTGCATGCTGTTGAGCCCGACT
TCGAGCGTTTTCAACGATTTGAAATAGTTGTGCACCGGGAACGAAACAAA
AAGGGAATATTTGCTGGTTGACCTGGCAGAGTTAGGTATGCGGGGGAGGT
TTTTAACTTTTCTAATATTTTAGGTGCTTTTCTGCTCGGCCGGGCCAATA
TTATTTCATCACTATATTGAATTGTGAATTCACCACGGAGTCCCGTCTTT
TTTGGGGAGGTTATTTCTTTGACTTTCCTGATTTATTTTCAAAAGGCCGG
CGCAAAACTGTTGCGCCGGCTTCCGCGTGTGTGTGTTTGCCATCGGCAGA
AAACACACACACACACACACACACATCAGAGAACAGCCAGATAAGAACAG
CTGCGTAGCTGTCAAGAGCCTGATGCGTGTTGACTGCTGTTCGAGTTGCG
CAGCACTATGAAATTGCCGAGGGAAGTGGCGGCTGCACAGGCGTGGGCGG
TAGAACAGCTGTCGCACTATTATTAGTCAATCGGCGCCACGTGCGTCGCC
AACCTGACAAGTCTCCTGAAAAGCCTGGTTCCAGTGCGTAGCTTGCAACA
AACAGCCCACAGATCCTGCACCCAGGGACATCCAAATCTATATATGTGTC
TATATACAAGCGGAGTAGACACCTACATACTACTCTACCCTCGTACAGTA
AAGATCCTTTCCGACCGTTTACACCCTCTCCCTTACCCCCAGTCGTTCTC
AACCAGGACTTTGTATGCGTGGAGGGTACAGGCGGGGCCGTGTGGCGATC
TTCCATCCAATTTTCCGAGTTCGTTTGCAGCGAGGAGGGACGCCGTTGCC
TGCCGCTCTTGGGGAAATCGCTGCTAGAGATCAGCTCGGGCGTAGGCCTC
GGGGCCATCGTGGCCTGGCACCTGGGAGCATCGCCGGTAGTGAGTCCTCC
GTGTTGCGTACCATGATACAGCTATCTATGTAGCACCACAACCTACGAAC
CTCTTGCTTCACCCGACGCACGGGTTCTTCTTCTGTTTTTCTGTGGGGCA
ATCAATTACCTTGATATTTATATCTAAGCGAAGGTTCTTACAGCGTATTT
TAAAGGCCATTATCCTCCCAATTCAAGAGTCCGTATCGTACACATGTATG
TCCATGCTTCGAAGAATATATTTGCCATTTTTTGAGGTGCAATTTCTTGA
CTGCTAAGTTTTCAAAAGTGTCGGCATCATCAAGCATGCGTGCGCTCTGC
GATTGATCGCGGTATATATATATATAGAACTCCCCCCACTGCTGCTGTTC
GCTCTGTCGAGTACTGTTATAAAACCAGATGCGCGGCCCTTTTTTGGCGT
CTTAGCGTAGACAGCAATGTCCATCTCAGTTTTTGTGCGCGGAGGCAGGC
GCCACCAAAAGAGGTGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1380:5977..8244+

>mRNA_L-elsbetiae_contig1380.2874.1 ID=mRNA_L-elsbetiae_contig1380.2874.1|Name=mRNA_L-elsbetiae_contig1380.2874.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig1380:5977..8244+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGTAGCCGCAGAATCATCGGAGGAGGAGGACGAGGTAGCATGCTT
CGAGGATGATACTGACAGCTTCATGCAACGAAAGCGAGAGTTTCTGTTCA
CCAACCTTCCACCAGATGGAGGTAGCCGCAGAATCATCGGAGGAGGAGGA
CGAGGTAGCATGCTTCGAGGATGATACTGACAGCTTCATGCAACGAAAGC
GAGAGTTTCTGTTCACCAACCTTCCACCAGTCGTTCTCAACCAGGACTTT
GTATGCGTGGAGGGTACAGGCGGGGCCGTGTGGCGATCTTCCATCCAATT
TTCCGAGTTCGTTTGCAGCGAGGAGGGACGCCGTTGCCTGCCGCTCTTGG
GGAAATCGCTGCTAGAGATCAGCTCGGGCGTAGGCCTCGGGGCCATCGTG
GCCTGGCACCTGGGAGCATCGCCGGTAGTGAGTCCTCCGTGTTGCGTACC
ATGATCGTTCTCAACCAGGACTTTGTATGCGTGGAGGGTACAGGCGGGGC
CGTGTGGCGATCTTCCATCCAATTTTCCGAGTTCGTTTGCAGCGAGGAGG
GACGCCGTTGCCTGCCGCTCTTGGGGAAATCGCTGCTAGAGATCAGCTCG
GGCGTAGGCCTCGGGGCCATCGTGGCCTGGCACCTGGGAGCATCGCCGGT
AGTGAGTCCTCCGTGTTGCGTACCATGA
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