mRNA_L-elsbetiae_contig10239.287.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10239.287.1 vs. uniprot
Match: D7FY88_ECTSI (SSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY88_ECTSI) HSP 1 Score: 169 bits (428), Expect = 1.910e-45 Identity = 90/182 (49.45%), Postives = 118/182 (64.84%), Query Frame = 1 Query: 1 FANFTVESGGDQLWVPRESISRTQEETITAFFGEDTEWALVLLEHPDEGGNVLTKASVDVLWELDAKIKELETGDGEDFSDLCAKGLDGVTCAQPFAGVTTFWGDDFETYTATVLDDSDVLEAVNVDNFPGGGGVAPAAIFGNSIVYDGDGEITAARAMMQSYALRKTTGSDAE-EKAVLEW 543 FANF VE+ G+ LWVP +S++ Q + I F E+A L+E P E G+VLTK SVD +WELDA + ++ DG ++D+C K LDGVTC QPF G+T FWG DF TY A+V +D+DVL AVN FP G V A+FGN I YD DG I+ A A++Q+YAL + DA + V +W Sbjct: 70 FANFRVEADGEDLWVPADSLTNDQRDIILGDFDGGGEFASFLVESPSETGSVLTKESVDAVWELDAIVMAVKV-DGNTYADVCLKELDGVTCEQPFRGITRFWG-DFATYEASVSNDADVLAAVNATTFPDGSAVNQQALFGNGITYDDDGNISGATAIIQAYALDSDSDEDAGINEIVYDW 249
BLAST of mRNA_L-elsbetiae_contig10239.287.1 vs. uniprot
Match: D7FY89_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY89_ECTSI) HSP 1 Score: 169 bits (428), Expect = 2.350e-45 Identity = 90/175 (51.43%), Postives = 117/175 (66.86%), Query Frame = 1 Query: 1 FANFTVESGGDQLWVPRESISRTQEETITAFFGEDTEWALVLLEHPDEGGNVLTKASVDVLWELDAKIKELETGDGEDFSDLCAKGLDGVTCAQPFAGVTTFWGDDFETYTATVLDDSDVLEAVNVDNFPGGGGVAPAAIFGNSIVYDGDGEITAARAMMQSYALRKTTGSDAEE 525 FANF +E+ G+ LWVP +S+++ Q++ I F +D E+A L+E P G+VLTK SVD +WELDA + +E G G + D+C K LDGVTC PF G+T FWG DF+TY A+V D+D+L AVNV FP G V A+FGN I YD DG I+ A A MQ+YAL GSD +E Sbjct: 71 FANFRIEADGEDLWVPADSLAKDQQDIIIQDFDDDGEYAAFLVESPS--GSVLTKESVDAIWELDAIVMAVEAG-GNTYVDVCPKELDGVTCEPPFRGITRFWG-DFDTYEASVTSDADILAAVNVATFPDGSTVNQLALFGNGITYDADGNISGASATMQAYAL----GSDPDE 237
BLAST of mRNA_L-elsbetiae_contig10239.287.1 vs. uniprot
Match: D7FY95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY95_ECTSI) HSP 1 Score: 167 bits (423), Expect = 1.160e-44 Identity = 89/183 (48.63%), Postives = 117/183 (63.93%), Query Frame = 1 Query: 1 FANFTVESGGDQLWVPRESISRTQEETITAFFGEDTEWALVLLEHPDEGGNVLTKASVDVLWELDAKIKELETGDGEDFSDLCAKGLDGVTCAQPFAGVTTFWGDDFETYTATVLDDSDVLEAVNVDNFPGGGGVAPAAIFGNSIVYDGDGEITAARAMMQSYALRKTT--GSDAEEKAVLEW 543 FANFT+E+ G+ LWVP +S++R + + F D E+A L+E P E G+VLTK SVD +WELDA ++ +E G G ++D+C K LDGVTC F G+T FWG DF TY A+V D+D+L VNV FP G V A+FGN I YD DG I+ ARA +Q +AL G+D E V +W Sbjct: 68 FANFTIEADGEDLWVPADSLARDHQSIVLEDFDGDGEFASFLVESPSETGSVLTKESVDAIWELDAIVRAVEVG-GNTYADVCGKELDGVTCEPVFRGITRFWG-DFATYEASVTSDADILATVNVATFPDGSTVNQQALFGNGITYDDDGNISGARATIQGFALDSDPDDGADINED-VFDW 247
BLAST of mRNA_L-elsbetiae_contig10239.287.1 vs. uniprot
Match: D8LCK9_ECTSI (Similar to Patched domain-containing protein 3, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK9_ECTSI) HSP 1 Score: 147 bits (371), Expect = 1.130e-37 Identity = 72/149 (48.32%), Postives = 99/149 (66.44%), Query Frame = 1 Query: 100 EDTEWALVLLEHPDEGGNVLTKASVDVLWELDAKIKELETGDGEDFSDLCAKGLDGVTCAQPFAGVTTFWGDDFETYTATVLDDSDVLEAVNVDNFPGGGGVAPAAIFGNSIVYDGDGE-ITAARAMMQSYALRKTTGSDAEEKAVLEW 543 + +++AL+LLE EGGNVLTKASVD+LW+L++++ +ET G ++DLC DGVTC QPF G+T FWG+DF+ Y A D+DVL A+N+D +P G V+ A+FGNS+ YD G + +A MQSY L T D E V +W Sbjct: 83 DGSDYALLLLESAVEGGNVLTKASVDMLWDLNSRVMLVETESGNTYTDLCTTDADGVTCKQPFRGITRFWGNDFDIYEAAATSDADVLAAINMDTYPDGQAVSLEAVFGNSLTYDATGSSVVSAGVFMQSYELELTANDDEEFWEVRQW 231
BLAST of mRNA_L-elsbetiae_contig10239.287.1 vs. uniprot
Match: D7FY98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY98_ECTSI) HSP 1 Score: 142 bits (359), Expect = 4.660e-36 Identity = 76/150 (50.67%), Postives = 97/150 (64.67%), Query Frame = 1 Query: 97 GEDTEWALVLLEHPDEGGNVLTKASVDVLWELDAKIKELETGDGEDFSDLCAKGLDGVTCAQPFAGVTTFWGDDFETYTATVLDDSDVLEAVNVDNFPGGGGVAPAAIFGNSIVYDGDGEITAARAMMQSYALRKTTGSDAE-EKAVLEW 543 G+D E+A L+E P E G+VLTK SVD +WELDA + +E DG ++DLC+K LDG TC F G+T FWG DF TY A+V D+D+L AVNV FP G V+ A+FGN I YD DG I+ ARA++Q YAL A+ V +W Sbjct: 78 GDDGEYATFLVESPSETGSVLTKESVDAVWELDAIVMAVEV-DGNTYADLCSKELDGATCEPVFRGITRFWG-DFYTYEASVTSDADILAAVNVTTFPDGSAVSEQALFGNGITYDDDGNISGARAVIQGYALASDPDDGADINDYVFDW 225
BLAST of mRNA_L-elsbetiae_contig10239.287.1 vs. uniprot
Match: D8LCK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK4_ECTSI) HSP 1 Score: 108 bits (270), Expect = 4.200e-24 Identity = 58/110 (52.73%), Postives = 71/110 (64.55%), Query Frame = 1 Query: 217 TGDGEDFSDLCAKGLDGVTCAQPFAGVTTFWGDDFETYTATVLDDSDVLEAVNVDNFPGGGGVAPAAIFGNSIVYDGDGEITAARAMMQSYALRKTTGSDAE-EKAVLEW 543 T G ++D+CAK LDGVTCA PF GVT FW D F Y A+V D+DVLEAVNV+ FP G V +FGN IVYD DG I+ +A++Q YAL DA+ K V +W Sbjct: 19 TWGGHTYADVCAKELDGVTCAAPFRGVTRFW-DGFAAYEASVTSDADVLEAVNVEAFPDGFPVNQQTLFGNGIVYDDDGNISGVKAIIQGYALSSDPDDDADINKEVFDW 127
BLAST of mRNA_L-elsbetiae_contig10239.287.1 vs. uniprot
Match: A0A6H5L5K0_9PHAE (SSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K0_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 9.610e-13 Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 1 FANFTVESGGDQLWVPRESISRTQEETITAFFGEDTEWALVLLEHPDEGGNVLTKASVDVLWELDAKIKELETGDGEDFSDLCA 252 FANF +E+ G+ LWVP +S+++ Q++ I F +D E+A +L+E P GNVLTK SVD +WELDA + +E D L A Sbjct: 72 FANFRIEADGEDLWVPADSLAKDQQDIIVQDFDDDGEYAALLVESPS--GNVLTKESVDAIWELDAIVMAVEASVTSDADILAA 153 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10239.287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10239.287.1 >prot_L-elsbetiae_contig10239.287.1 ID=prot_L-elsbetiae_contig10239.287.1|Name=mRNA_L-elsbetiae_contig10239.287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=183bp FANFTVESGGDQLWVPRESISRTQEETITAFFGEDTEWALVLLEHPDEGGback to top mRNA from alignment at L-elsbetiae_contig10239:2233..5739+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10239.287.1 ID=mRNA_L-elsbetiae_contig10239.287.1|Name=mRNA_L-elsbetiae_contig10239.287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3507bp|location=Sequence derived from alignment at L-elsbetiae_contig10239:2233..5739+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10239:2233..5739+ >mRNA_L-elsbetiae_contig10239.287.1 ID=mRNA_L-elsbetiae_contig10239.287.1|Name=mRNA_L-elsbetiae_contig10239.287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1098bp|location=Sequence derived from alignment at L-elsbetiae_contig10239:2233..5739+ (Laminarionema elsbetiae ELsaHSoW15)back to top |