mRNA_L-elsbetiae_contig13769.2858.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13769.2858.1
Unique NamemRNA_L-elsbetiae_contig13769.2858.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13769.2858.1 vs. uniprot
Match: A0A6H5L6Q9_9PHAE (Protein xylosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6Q9_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.320e-10
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 QAIYDPSNFYLVHLDRKDTQDVRRDLESFIGGWSNV 108
            +AIYDP+NFYLVHLDRKD   +RRD E+FI  W NV
Sbjct:  196 KAIYDPNNFYLVHLDRKDKHSIRRDFENFIEEWDNV 231
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BLAST of mRNA_L-elsbetiae_contig13769.2858.1 vs. uniprot
Match: UPI001FD6B0E1 (beta-1,6-N-acetylglucosaminyltransferase n=2 Tax=Chryseobacterium TaxID=59732 RepID=UPI001FD6B0E1)

HSP 1 Score: 48.9 bits (115), Expect = 1.380e-5
Identity = 17/36 (47.22%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 QAIYDPSNFYLVHLDRKDTQDVRRDLESFIGGWSNV 108
            +AIY+ +NFYL+H+D+K TQ++ +D+ SF+  + NV
Sbjct:   42 KAIYESTNFYLIHIDKKATQEINKDVRSFLEQYPNV 77
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BLAST of mRNA_L-elsbetiae_contig13769.2858.1 vs. uniprot
Match: A0A086BLZ3_9FLAO (Glycosyl transferase n=2 Tax=Chryseobacterium piperi TaxID=558152 RepID=A0A086BLZ3_9FLAO)

HSP 1 Score: 47.4 bits (111), Expect = 4.830e-5
Identity = 15/36 (41.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 QAIYDPSNFYLVHLDRKDTQDVRRDLESFIGGWSNV 108
            +AIY+P+NFYL+H+D+K  Q++ +D+  F+  + N+
Sbjct:   28 KAIYEPTNFYLIHIDKKANQEIGKDVRDFLKKYPNI 63
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BLAST of mRNA_L-elsbetiae_contig13769.2858.1 vs. uniprot
Match: UPI001E3BEF94 (beta-1,6-N-acetylglucosaminyltransferase n=1 Tax=Chryseobacterium soli TaxID=445961 RepID=UPI001E3BEF94)

HSP 1 Score: 47.4 bits (111), Expect = 4.860e-5
Identity = 16/36 (44.44%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 QAIYDPSNFYLVHLDRKDTQDVRRDLESFIGGWSNV 108
            QAIY+P +FYL+H+D+K +Q++  ++ SF+  ++NV
Sbjct:   42 QAIYEPDHFYLIHIDKKASQEIGEEVSSFLEKYTNV 77
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BLAST of mRNA_L-elsbetiae_contig13769.2858.1 vs. uniprot
Match: UPI001BEA58E1 (beta-1,6-N-acetylglucosaminyltransferase n=1 Tax=Chryseobacterium sp. ISL-6 TaxID=2819143 RepID=UPI001BEA58E1)

HSP 1 Score: 47.0 bits (110), Expect = 6.650e-5
Identity = 16/36 (44.44%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 QAIYDPSNFYLVHLDRKDTQDVRRDLESFIGGWSNV 108
            +AIY+PSNFYL+H+D+K  Q++  +++ F+  + NV
Sbjct:   41 KAIYEPSNFYLIHIDKKANQEIGEEVKDFLKEYPNV 76
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BLAST of mRNA_L-elsbetiae_contig13769.2858.1 vs. uniprot
Match: A0A2X2XPZ3_9FLAO (Core-2/I-Branching enzyme n=13 Tax=Chryseobacterium TaxID=59732 RepID=A0A2X2XPZ3_9FLAO)

HSP 1 Score: 46.6 bits (109), Expect = 9.100e-5
Identity = 16/36 (44.44%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 QAIYDPSNFYLVHLDRKDTQDVRRDLESFIGGWSNV 108
            +AIYD +NFYL+H+D+K  Q++ +D++ F+  + NV
Sbjct:   42 KAIYDSTNFYLIHIDKKANQEIGKDVKDFLKQYPNV 77
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BLAST of mRNA_L-elsbetiae_contig13769.2858.1 vs. uniprot
Match: A0A511Y5Z0_9FLAO (Glycosyl transferase n=2 Tax=Chryseobacterium lathyri TaxID=395933 RepID=A0A511Y5Z0_9FLAO)

HSP 1 Score: 46.6 bits (109), Expect = 9.100e-5
Identity = 16/36 (44.44%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 QAIYDPSNFYLVHLDRKDTQDVRRDLESFIGGWSNV 108
            +A+YDPSNFYL+H+D+K  Q++  ++  F+  + NV
Sbjct:   42 KALYDPSNFYLIHIDKKANQEIGEEVSVFLQKYPNV 77
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13769.2858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L6Q9_9PHAE3.320e-1069.44Protein xylosyltransferase n=2 Tax=Ectocarpus TaxI... [more]
UPI001FD6B0E11.380e-547.22beta-1,6-N-acetylglucosaminyltransferase n=2 Tax=C... [more]
A0A086BLZ3_9FLAO4.830e-541.67Glycosyl transferase n=2 Tax=Chryseobacterium pipe... [more]
UPI001E3BEF944.860e-544.44beta-1,6-N-acetylglucosaminyltransferase n=1 Tax=C... [more]
UPI001BEA58E16.650e-544.44beta-1,6-N-acetylglucosaminyltransferase n=1 Tax=C... [more]
A0A2X2XPZ3_9FLAO9.100e-544.44Core-2/I-Branching enzyme n=13 Tax=Chryseobacteriu... [more]
A0A511Y5Z0_9FLAO9.100e-544.44Glycosyl transferase n=2 Tax=Chryseobacterium lath... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13769contigL-elsbetiae_contig13769:4776..4883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog2880.D7FMI2
Preferred nameXYLT2
KEGG koko:K00771
KEGG ReactionR05925
KEGG Pathwayko00532,ko00534,ko01100,map00532,map00534,map01100
KEGG ModuleM00057
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000139,GO:0002009,GO:0002119,GO:0002164,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005996,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006082,GO:0006139,GO:0006725,GO:0006790,GO:0006793,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0007610,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009791,GO:0009888,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016763,GO:0018991,GO:0019098,GO:0019321,GO:0019538,GO:0022008,GO:0022414,GO:0030154,GO:0030158,GO:0030166,GO:0030201,GO:0030202,GO:0030203,GO:0030204,GO:0030206,GO:0030210,GO:0031090,GO:0031224,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032504,GO:0033319,GO:0033554,GO:0034097,GO:0034605,GO:0034641,GO:0034645,GO:0035252,GO:0040025,GO:0042221,GO:0042285,GO:0042732,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046483,GO:0048513,GO:0048519,GO:0048523,GO:0048569,GO:0048583,GO:0048585,GO:0048609,GO:0048679,GO:0048681,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051716,GO:0051960,GO:0051961,GO:0055086,GO:0060284,GO:0060429,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:0140096,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:1903510,GO:2000026
EggNOG free text desc.acetylglucosaminyltransferase activity
EggNOG OGsKOG0799@1,KOG0799@2759
EC2.4.2.26
COG Functional cat.O
CAZyGT14
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Exons1
Model size108
Cds size108
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.086316-CDS-L-elsbetiae_contig13769:4775..48831622815538.086316-CDS-L-elsbetiae_contig13769:4775..4883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13769 4776..4883 +
1691682947.292849-CDS-L-elsbetiae_contig13769:4775..48831691682947.292849-CDS-L-elsbetiae_contig13769:4775..4883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13769 4776..4883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13769.2858.1prot_L-elsbetiae_contig13769.2858.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13769 4776..4883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13769.2858.1

>prot_L-elsbetiae_contig13769.2858.1 ID=prot_L-elsbetiae_contig13769.2858.1|Name=mRNA_L-elsbetiae_contig13769.2858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=36bp
QAIYDPSNFYLVHLDRKDTQDVRRDLESFIGGWSNV
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mRNA from alignment at L-elsbetiae_contig13769:4776..4883+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13769.2858.1 ID=mRNA_L-elsbetiae_contig13769.2858.1|Name=mRNA_L-elsbetiae_contig13769.2858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=108bp|location=Sequence derived from alignment at L-elsbetiae_contig13769:4776..4883+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGATATACGACCCCAGCAACTTCTACCTGGTGCACTTGGACCGTAA
AGACACCCAAGATGTCCGGAGAGATCTAGAAAGTTTCATCGGAGGCTGGA
GCAATGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13769:4776..4883+

>mRNA_L-elsbetiae_contig13769.2858.1 ID=mRNA_L-elsbetiae_contig13769.2858.1|Name=mRNA_L-elsbetiae_contig13769.2858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=216bp|location=Sequence derived from alignment at L-elsbetiae_contig13769:4776..4883+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGATATACGACCCCAGCAACTTCTACCTGGTGCACTTGGACCGTAA
AGACACCCAAGATGTCCGGAGAGATCTAGAAAGTTTCATCGGAGGCTGGA
GCAATGTCCAGGCGATATACGACCCCAGCAACTTCTACCTGGTGCACTTG
GACCGTAAAGACACCCAAGATGTCCGGAGAGATCTAGAAAGTTTCATCGG
AGGCTGGAGCAATGTC
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