mRNA_L-elsbetiae_contig1369.2804.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1369.2804.1 vs. uniprot
Match: A0A8F0F7K4_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7K4_9PHAE) HSP 1 Score: 294 bits (753), Expect = 1.180e-99 Identity = 141/185 (76.22%), Postives = 171/185 (92.43%), Query Frame = 1 Query: 1 MNTENNILIKRDLIIGSRRLSNFFLTSILFLGGLGFLLTGISSYFKNDFLPFGSPSQLSFIPQGIVMTFYGIIAISLSIYIGLTIFWDIGSGYNEFNKEDQLIRIVRKGFPGKNRQILLIYSFKNLKSIKLNIQEGINPKHTIYLCTKDKREIPLTQVEQPRSLKILENEAADLARFLNINLEGL 555 M+ ++N LIKRD++IGSRR+SN+F T ILF+GGL FL+TGISSYF+ +FLPF + +LSF+PQG+VMTFYG++A+SLSIYIGLTIFWDIGSGYNEF+K+ +L+RIVRKGFPGKNRQILL+YSF N+KSIKLNIQ+GINPK IYLCTKD+REIPLT VEQPRSL++LENEA++LARFLNINLEGL Sbjct: 1 MSIKSNELIKRDIVIGSRRISNYFWTVILFIGGLAFLITGISSYFQRNFLPFINSFELSFLPQGLVMTFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQTELVRIVRKGFPGKNRQILLVYSFNNIKSIKLNIQDGINPKRVIYLCTKDQREIPLTPVEQPRSLELLENEASNLARFLNINLEGL 185
BLAST of mRNA_L-elsbetiae_contig1369.2804.1 vs. uniprot
Match: A0A6G6D7G8_ECTSI (Photosystem I assembly protein Ycf4 n=32 Tax=Phaeophyceae TaxID=2870 RepID=A0A6G6D7G8_ECTSI) HSP 1 Score: 288 bits (738), Expect = 2.060e-97 Identity = 138/181 (76.24%), Postives = 167/181 (92.27%), Query Frame = 1 Query: 13 NNILIKRDLIIGSRRLSNFFLTSILFLGGLGFLLTGISSYFKNDFLPFGSPSQLSFIPQGIVMTFYGIIAISLSIYIGLTIFWDIGSGYNEFNKEDQLIRIVRKGFPGKNRQILLIYSFKNLKSIKLNIQEGINPKHTIYLCTKDKREIPLTQVEQPRSLKILENEAADLARFLNINLEGL 555 +N L+KRD+++GSRR SNFF T ILF GGLGFLLTGISSYF+ + L F + ++LSF+PQG+VMTFYG++ ISLSIYIGLTIFWD+GSGYNEF+K+++LIRIVR+GFPGKNRQILL+Y+FKN+KSIKLNIQ+GINPK IYLCTKD+REIPLT VEQPRSL++LENEA++LARFLNINLEGL Sbjct: 2 SNNLLKRDIVVGSRRFSNFFWTFILFFGGLGFLLTGISSYFQKNLLFFINSTELSFLPQGLVMTFYGVVGISLSIYIGLTIFWDVGSGYNEFDKQNELIRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRIIYLCTKDQREIPLTPVEQPRSLEVLENEASELARFLNINLEGL 182
BLAST of mRNA_L-elsbetiae_contig1369.2804.1 vs. uniprot
Match: A0A8E6D5U2_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D5U2_9PHAE) HSP 1 Score: 283 bits (725), Expect = 2.340e-95 Identity = 137/185 (74.05%), Postives = 162/185 (87.57%), Query Frame = 1 Query: 1 MNTENNILIKRDLIIGSRRLSNFFLTSILFLGGLGFLLTGISSYFKNDFLPFGSPSQLSFIPQGIVMTFYGIIAISLSIYIGLTIFWDIGSGYNEFNKEDQLIRIVRKGFPGKNRQILLIYSFKNLKSIKLNIQEGINPKHTIYLCTKDKREIPLTQVEQPRSLKILENEAADLARFLNINLEGL 555 M+ N L+KRD+IIGSRR SN+F IL LGGLGFLL G+SSYFK +FLPFG+ +L+F+PQG+VMTFYG++AISLSIYI LTI WD+G GYNEF+K+ +LIRIVR+GFPGKNRQILL+YSF+N+KSIKLNIQ+GINPK IYLCTKDKREIPLT VEQPR L ILE EA++LA+FLNINLEGL Sbjct: 3 MSKITNNLLKRDIIIGSRRFSNYFWAFILLLGGLGFLLAGVSSYFKKNFLPFGNSIELNFVPQGLVMTFYGVVAISLSIYIALTILWDVGGGYNEFDKDKELIRIVRRGFPGKNRQILLVYSFQNIKSIKLNIQDGINPKRIIYLCTKDKREIPLTPVEQPRPLNILETEASELAKFLNINLEGL 187
BLAST of mRNA_L-elsbetiae_contig1369.2804.1 vs. uniprot
Match: A0A1L2F1V9_9PHAE (Photosystem I assembly protein Ycf4 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1V9_9PHAE) HSP 1 Score: 283 bits (724), Expect = 3.210e-95 Identity = 134/178 (75.28%), Postives = 162/178 (91.01%), Query Frame = 1 Query: 22 LIKRDLIIGSRRLSNFFLTSILFLGGLGFLLTGISSYFKNDFLPFGSPSQLSFIPQGIVMTFYGIIAISLSIYIGLTIFWDIGSGYNEFNKEDQLIRIVRKGFPGKNRQILLIYSFKNLKSIKLNIQEGINPKHTIYLCTKDKREIPLTQVEQPRSLKILENEAADLARFLNINLEGL 555 L+KRD+++GSRR SN+F T ILFLGGLGFL+ GISSYF+ + L F + QLSF+PQG++MTFYG+IAI LS YIGLTIFWD+GSGYNEF+KE++L+RIVR+GFPGKNR+ILL+Y F+NLKSIKLNIQ+G+NPK IYLCTKD+REIPLT VEQPRSL+ILENEA++LARFLNINLEGL Sbjct: 9 LLKRDIVVGSRRFSNYFWTIILFLGGLGFLIAGISSYFQKNLLGFINSEQLSFLPQGVIMTFYGVIAIGLSFYIGLTIFWDVGSGYNEFDKENELVRIVRRGFPGKNRKILLVYQFRNLKSIKLNIQDGLNPKRIIYLCTKDQREIPLTPVEQPRSLEILENEASELARFLNINLEGL 186
BLAST of mRNA_L-elsbetiae_contig1369.2804.1 vs. uniprot
Match: A0A8F0F7W7_AKKLU (Photosystem I assembly protein Ycf4 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F7W7_AKKLU) HSP 1 Score: 282 bits (722), Expect = 6.460e-95 Identity = 137/184 (74.46%), Postives = 163/184 (88.59%), Query Frame = 1 Query: 4 NTENNILIKRDLIIGSRRLSNFFLTSILFLGGLGFLLTGISSYFKNDFLPFGSPSQLSFIPQGIVMTFYGIIAISLSIYIGLTIFWDIGSGYNEFNKEDQLIRIVRKGFPGKNRQILLIYSFKNLKSIKLNIQEGINPKHTIYLCTKDKREIPLTQVEQPRSLKILENEAADLARFLNINLEGL 555 N + N IKRD+++GSRR SN+F +LF GG GFLLTGISSYF+ + L F + ++LSF+PQG+VMTFYG++AISLSIYI LTIFWDIGSGYNEF+K D+LIRIVR+GFPGKNRQILL+Y+FKN+KSIKLNIQ+GINPK IYLCTKD+REIPLT VEQPRSL+ LENEA++LARFLNINLEGL Sbjct: 3 NDQINPFIKRDVVVGSRRFSNYFWALVLFFGGAGFLLTGISSYFQKNLLFFINSTELSFLPQGLVMTFYGVVAISLSIYIALTIFWDIGSGYNEFDKRDELIRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRVIYLCTKDQREIPLTPVEQPRSLETLENEASELARFLNINLEGL 186
BLAST of mRNA_L-elsbetiae_contig1369.2804.1 vs. uniprot
Match: A0A344PFE2_9PHAE (Photosystem I assembly protein Ycf4 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PFE2_9PHAE) HSP 1 Score: 280 bits (716), Expect = 4.620e-94 Identity = 131/178 (73.60%), Postives = 162/178 (91.01%), Query Frame = 1 Query: 22 LIKRDLIIGSRRLSNFFLTSILFLGGLGFLLTGISSYFKNDFLPFGSPSQLSFIPQGIVMTFYGIIAISLSIYIGLTIFWDIGSGYNEFNKEDQLIRIVRKGFPGKNRQILLIYSFKNLKSIKLNIQEGINPKHTIYLCTKDKREIPLTQVEQPRSLKILENEAADLARFLNINLEGL 555 L+KRD+++GSRR SNFF ILF GGLGF LTG+ SYFK +FL F + + L+F+PQG++MTFYG++AISLSIYI LT+FWD+GSGYNEF+K+++LIRIVR+GFPGKNRQILL+Y+FKN+KSIKLNIQ+GINPK IYLCTKD+REIPLT VEQPRSL++LENEA++LARFLNINLEG+ Sbjct: 5 LLKRDIVVGSRRFSNFFWAFILFFGGLGFFLTGVLSYFKKNFLFFINSNDLAFLPQGLIMTFYGVVAISLSIYISLTVFWDVGSGYNEFDKQNELIRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRIIYLCTKDQREIPLTAVEQPRSLEVLENEASELARFLNINLEGV 182
BLAST of mRNA_L-elsbetiae_contig1369.2804.1 vs. uniprot
Match: A0A2I4Q2G9_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2G9_9PHAE) HSP 1 Score: 279 bits (714), Expect = 1.110e-93 Identity = 137/184 (74.46%), Postives = 163/184 (88.59%), Query Frame = 1 Query: 4 NTENNILIKRDLIIGSRRLSNFFLTSILFLGGLGFLLTGISSYFKNDFLPFGSPSQLSFIPQGIVMTFYGIIAISLSIYIGLTIFWDIGSGYNEFNKEDQLIRIVRKGFPGKNRQILLIYSFKNLKSIKLNIQEGINPKHTIYLCTKDKREIPLTQVEQPRSLKILENEAADLARFLNINLEGL 555 N E +I IKRD+IIGSRR SN F ILFLGG+GFLLTGIS+Y++ +FLPF + + LSF+PQG++MTFYGII +SLS++I LTIFWD+GSGYNEFNK+ +LIRIVR+GFPGKNR+ILL+Y F N+KSIKLNIQEGINPK IYLCTKD+REIPLT VEQPRSLK+LENEA++LARFLNI LEGL Sbjct: 5 NLETHI-IKRDIIIGSRRFSNLFWAIILFLGGVGFLLTGISTYYQKNFLPFVNTADLSFLPQGLIMTFYGIIGLSLSLFISLTIFWDVGSGYNEFNKQTELIRIVRRGFPGKNRKILLVYPFNNIKSIKLNIQEGINPKRIIYLCTKDEREIPLTPVEQPRSLKLLENEASNLARFLNIKLEGL 187
BLAST of mRNA_L-elsbetiae_contig1369.2804.1 vs. uniprot
Match: Q2PQH1_FUCVE (Photosystem I assembly protein Ycf4 n=3 Tax=Fucaceae TaxID=3010 RepID=Q2PQH1_FUCVE) HSP 1 Score: 271 bits (693), Expect = 1.690e-90 Identity = 131/178 (73.60%), Postives = 157/178 (88.20%), Query Frame = 1 Query: 22 LIKRDLIIGSRRLSNFFLTSILFLGGLGFLLTGISSYFKNDFLPFGSPSQLSFIPQGIVMTFYGIIAISLSIYIGLTIFWDIGSGYNEFNKEDQLIRIVRKGFPGKNRQILLIYSFKNLKSIKLNIQEGINPKHTIYLCTKDKREIPLTQVEQPRSLKILENEAADLARFLNINLEGL 555 L+KRD+IIGSRR SN+F T ILF GGLGFL+ GISSY +N+ L F +L+F+PQG++MTFYG+IAISLS+YI LTIFWD+GSGYNEF+KE+QL+RIVR GFPGKNR+ILL+Y FKNLKSIKL IQ+GINPK IYLCTKD+REIPLT VEQPR L+ LEN+A++LA+FLNINLEGL Sbjct: 9 LLKRDIIIGSRRFSNYFWTIILFFGGLGFLIAGISSYLQNNILFFIDSKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNRKILLVYQFKNLKSIKLTIQDGINPKRIIYLCTKDQREIPLTPVEQPRPLESLENDASELAKFLNINLEGL 186
BLAST of mRNA_L-elsbetiae_contig1369.2804.1 vs. uniprot
Match: A0A7S6U9V1_9STRA (Photosystem I assembly protein Ycf4 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V1_9STRA) HSP 1 Score: 268 bits (684), Expect = 3.570e-89 Identity = 131/182 (71.98%), Postives = 154/182 (84.62%), Query Frame = 1 Query: 10 ENNILIKRDLIIGSRRLSNFFLTSILFLGGLGFLLTGISSYFKNDFLPFGSPSQLSFIPQGIVMTFYGIIAISLSIYIGLTIFWDIGSGYNEFNKEDQLIRIVRKGFPGKNRQILLIYSFKNLKSIKLNIQEGINPKHTIYLCTKDKREIPLTQVEQPRSLKILENEAADLARFLNINLEGL 555 + N L+KRD I GSRR SN+F ILFLGG GF LTGISSY K +FLPFG P QLSFIPQGIVMTFYG++AI+LS YI LTI WD+GSGYNEF+K + +IRIVRKGFPGKNRQILL+YS KN+KSIK+++++GINPK TIYLCTKD R+IPLTQV QP+ LK LEN+AA LA+FL I LEG+ Sbjct: 2 DENKLMKRDFITGSRRFSNYFWACILFLGGFGFFLTGISSYLKVNFLPFGDPYQLSFIPQGIVMTFYGVLAITLSAYISLTIIWDVGSGYNEFDKLNNVIRIVRKGFPGKNRQILLVYSIKNIKSIKIDVKDGINPKRTIYLCTKDNRKIPLTQVGQPQPLKELENDAATLAQFLEIELEGI 183
BLAST of mRNA_L-elsbetiae_contig1369.2804.1 vs. uniprot
Match: B7T212_VAULI (Photosystem I assembly protein Ycf4 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T212_VAULI) HSP 1 Score: 257 bits (656), Expect = 7.000e-85 Identity = 125/185 (67.57%), Postives = 154/185 (83.24%), Query Frame = 1 Query: 1 MNTENNILIKRDLIIGSRRLSNFFLTSILFLGGLGFLLTGISSYFKNDFLPFGSPSQLSFIPQGIVMTFYGIIAISLSIYIGLTIFWDIGSGYNEFNKEDQLIRIVRKGFPGKNRQILLIYSFKNLKSIKLNIQEGINPKHTIYLCTKDKREIPLTQVEQPRSLKILENEAADLARFLNINLEGL 555 MN + LI+RD+I+GSRR SN+F IL +GGLGFLL G SSY K + L F +P++L FIPQGIVMTFYG++AISLS YI LTI WD+G+GYNEFNK D+L+RI+RKGFPGKNRQILL+Y F N+KSIKL IQ+GINPK ++LCTKD+R+IPL QVEQPRSL LE +A++LA+FL +NLEGL Sbjct: 1 MNHKIKNLIRRDIILGSRRFSNYFWALILAIGGLGFLLAGFSSYSKINLLYFANPTELIFIPQGIVMTFYGVVAISLSFYITLTIIWDVGAGYNEFNKVDELVRIMRKGFPGKNRQILLVYPFNNIKSIKLTIQDGINPKRLLFLCTKDQRQIPLNQVEQPRSLLELETQASELAKFLEVNLEGL 185 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1369.2804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1369.2804.1 >prot_L-elsbetiae_contig1369.2804.1 ID=prot_L-elsbetiae_contig1369.2804.1|Name=mRNA_L-elsbetiae_contig1369.2804.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=186bp MNTENNILIKRDLIIGSRRLSNFFLTSILFLGGLGFLLTGISSYFKNDFLback to top mRNA from alignment at L-elsbetiae_contig1369:3892..4449+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1369.2804.1 ID=mRNA_L-elsbetiae_contig1369.2804.1|Name=mRNA_L-elsbetiae_contig1369.2804.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig1369:3892..4449+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1369:3892..4449+ >mRNA_L-elsbetiae_contig1369.2804.1 ID=mRNA_L-elsbetiae_contig1369.2804.1|Name=mRNA_L-elsbetiae_contig1369.2804.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1116bp|location=Sequence derived from alignment at L-elsbetiae_contig1369:3892..4449+ (Laminarionema elsbetiae ELsaHSoW15)back to top |