mRNA_L-elsbetiae_contig1369.2801.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1369.2801.1
Unique NamemRNA_L-elsbetiae_contig1369.2801.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1369.2801.1 vs. uniprot
Match: A0A8F0FAQ0_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAQ0_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 1.820e-50
Identity = 73/106 (68.87%), Postives = 83/106 (78.30%), Query Frame = 1
Query:    1 MNKNLSFSKSFESMHKFAEIYAKQTNTFFCIDPSITSVVINGLANYKEKYGAPLCPCRNYDNINGEIKLSYWNCPCVPMRERKECHCKLFLTSDDDYASQLQTIDI 318
            + KN +F     +MHKFAE YAKQTNTFFC DPSITS+VI GLA YK+KYG PLCPCRNY N   EI+L+YW CPCV MRERKECHCKLF+  DD+Y S+ Q IDI
Sbjct:    3 LKKNDNFYDCVNAMHKFAETYAKQTNTFFCFDPSITSIVITGLATYKDKYGVPLCPCRNYYNEEAEIELNYWICPCVAMRERKECHCKLFINPDDEYVSENQKIDI 108          
BLAST of mRNA_L-elsbetiae_contig1369.2801.1 vs. uniprot
Match: A0A8F0F757_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F757_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 8.400e-50
Identity = 72/102 (70.59%), Postives = 81/102 (79.41%), Query Frame = 1
Query:   25 KSFESMHKFAEIYAKQTNTFFCIDPSITSVVINGLANYKEKYGAPLCPCRNYDNINGEIKLSYWNCPCVPMRERKECHCKLFLTSDDDYASQLQTIDIKEFF 330
            +S ESMHKFA+ Y KQTNTFFC+DP+ITSVVI GLANYK KYG PLCPCRNY N   EI L+YW CPCV MRERKECHCKLFLT D  + S+ Q IDI+  +
Sbjct:   15 QSLESMHKFAQNYTKQTNTFFCLDPAITSVVITGLANYKSKYGVPLCPCRNYHNEKDEIDLNYWICPCVAMRERKECHCKLFLTPDQKFVSEKQEIDIETVY 116          
BLAST of mRNA_L-elsbetiae_contig1369.2801.1 vs. uniprot
Match: A0A2I4Q2F8_9PHAE (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2F8_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 1.740e-48
Identity = 69/99 (69.70%), Postives = 81/99 (81.82%), Query Frame = 1
Query:   22 SKSFESMHKFAEIYAKQTNTFFCIDPSITSVVINGLANYKEKYGAPLCPCRNYDNINGEIKLSYWNCPCVPMRERKECHCKLFLTSDDDYASQLQTIDI 318
            S S ES+ +FAEIY K+TNTFFC DPSIT++V+ GL  +KEKYG PLCPCRNY N   E+ L+YW CPCV MRERKECHCKLFLT DD+Y+S+ QTIDI
Sbjct:   10 SNSVESIQRFAEIYTKRTNTFFCFDPSITAIVLTGLVRHKEKYGVPLCPCRNYFNEEAEVDLNYWICPCVAMRERKECHCKLFLTPDDEYSSKNQTIDI 108          
BLAST of mRNA_L-elsbetiae_contig1369.2801.1 vs. uniprot
Match: A0A261KS13_9CYAN (Ferredoxin-thioredoxin reductase, catalytic chain n=17 Tax=Oscillatoriales TaxID=1150 RepID=A0A261KS13_9CYAN)

HSP 1 Score: 157 bits (397), Expect = 1.210e-47
Identity = 67/103 (65.05%), Postives = 84/103 (81.55%), Query Frame = 1
Query:    4 NKNLSFSKSFESMHKFAEIYAKQTNTFFCIDPSITSVVINGLANYKEKYGAPLCPCRNYDNINGEIKLSYWNCPCVPMRERKECHCKLFLTSDDDYASQLQTI 312
            NK LS  KS E+M KF+E YAK TNT+FC+DPS+T+VVI GLA +K++ GAPLCPCR+Y++   E+K +YWNCPCVPMRERKECHC LFLT D+D+A + Q I
Sbjct:    7 NKKLSSEKSLEAMKKFSEKYAKNTNTYFCVDPSVTAVVIEGLAKHKDELGAPLCPCRHYEDKEAEVKATYWNCPCVPMRERKECHCMLFLTPDNDFAGEQQEI 109          
BLAST of mRNA_L-elsbetiae_contig1369.2801.1 vs. uniprot
Match: A0A0U2I037_GUITH (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A0U2I037_GUITH)

HSP 1 Score: 156 bits (394), Expect = 2.550e-47
Identity = 66/98 (67.35%), Postives = 82/98 (83.67%), Query Frame = 1
Query:   22 SKSFESMHKFAEIYAKQTNTFFCIDPSITSVVINGLANYKEKYGAPLCPCRNYDNINGEIKLSYWNCPCVPMRERKECHCKLFLTSDDDYASQLQTID 315
            S S ++MHKF+E YAK+TNT+FC DPSIT+VVI GLA +KE+YGAPLCPCR+YD+   E+  +YWNCPCVPMRERKECHC LFLT ++++A   QTID
Sbjct:    6 SSSLQAMHKFSETYAKRTNTYFCSDPSITAVVIEGLAKHKEEYGAPLCPCRHYDDKEAEVSSAYWNCPCVPMRERKECHCMLFLTPENEFAGLEQTID 103          
BLAST of mRNA_L-elsbetiae_contig1369.2801.1 vs. uniprot
Match: A0A8E6D4Y1_9PHAE (Ferredoxin-thioredoxin reductase beta subunit n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D4Y1_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 3.480e-47
Identity = 68/98 (69.39%), Postives = 80/98 (81.63%), Query Frame = 1
Query:   28 SFESMHKFAEIYAKQTNTFFCIDPSITSVVINGLANYKEKYGAPLCPCRNYDNINGEIKLSYWNCPCVPMRERKECHCKLFLTSDDDYASQLQTIDIK 321
            S ++MHKFAE YAK+TNTFFC+DPS+T VVI GL+ YKEKYG PLCPCRNY+N   E+  +YW CPCV MRER+ECHCKLFLTSDD  AS  Q ID++
Sbjct:   18 SLKAMHKFAETYAKKTNTFFCVDPSVTCVVIKGLSVYKEKYGLPLCPCRNYENEEAELDSTYWLCPCVAMRERRECHCKLFLTSDDREASHNQEIDLQ 115          
BLAST of mRNA_L-elsbetiae_contig1369.2801.1 vs. uniprot
Match: A0A075W3M9_GALSU (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=A0A075W3M9_GALSU)

HSP 1 Score: 155 bits (393), Expect = 4.360e-47
Identity = 69/105 (65.71%), Postives = 83/105 (79.05%), Query Frame = 1
Query:    4 NKNLSFSKSFESMHKFAEIYAKQTNTFFCIDPSITSVVINGLANYKEKYGAPLCPCRNYDNINGEIKLSYWNCPCVPMRERKECHCKLFLTSDDDYASQLQTIDI 318
            N N    +S  +M KFAE YAK+T TFFCIDPS+T VVI GLA +K +YGAPLCPCR+YDN + E+  +YWNCPCVPMRERKECHC LFLTS++++ASQ Q I I
Sbjct:   11 NTNTMHRESLNAMIKFAETYAKRTGTFFCIDPSVTQVVIEGLAKHKAEYGAPLCPCRHYDNKSVEVSAAYWNCPCVPMRERKECHCMLFLTSNNEFASQKQEISI 115          
BLAST of mRNA_L-elsbetiae_contig1369.2801.1 vs. uniprot
Match: A0A6B3MAV2_9CYAN (Ferredoxin-thioredoxin reductase, catalytic chain n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A6B3MAV2_9CYAN)

HSP 1 Score: 155 bits (393), Expect = 6.140e-47
Identity = 63/100 (63.00%), Postives = 83/100 (83.00%), Query Frame = 1
Query:   25 KSFESMHKFAEIYAKQTNTFFCIDPSITSVVINGLANYKEKYGAPLCPCRNYDNINGEIKLSYWNCPCVPMRERKECHCKLFLTSDDDYASQLQTIDIKE 324
            K  E+M  FAE YAK+TNT+FC+DPS+T+VV+ GLA +KE+ GAPLCPCR+Y++   E+K +YWNCPC+PMRERKECHC LFLT D+D+A   QTI+++E
Sbjct:   20 KKLEAMKSFAEQYAKRTNTYFCVDPSVTAVVVEGLAKHKEELGAPLCPCRHYEDKEAEVKATYWNCPCIPMRERKECHCMLFLTPDNDFAGDKQTIELEE 119          
BLAST of mRNA_L-elsbetiae_contig1369.2801.1 vs. uniprot
Match: A0A0F5YN27_9CYAN (Ferredoxin-thioredoxin reductase, catalytic chain n=1 Tax=Limnoraphis robusta CS-951 TaxID=1637645 RepID=A0A0F5YN27_9CYAN)

HSP 1 Score: 154 bits (390), Expect = 1.410e-46
Identity = 66/103 (64.08%), Postives = 84/103 (81.55%), Query Frame = 1
Query:    4 NKNLSFSKSFESMHKFAEIYAKQTNTFFCIDPSITSVVINGLANYKEKYGAPLCPCRNYDNINGEIKLSYWNCPCVPMRERKECHCKLFLTSDDDYASQLQTI 312
            NKNLS   S ++M KFAE YAK TNT+FC+DPS+T+VVI GLA +K++ GAPLCPCR+Y++   E+K ++WNCPCVPMRERKECHC LFLT D+D+A + Q I
Sbjct:    6 NKNLSTETSLKAMKKFAEKYAKNTNTYFCVDPSVTAVVIEGLAKHKDELGAPLCPCRHYEDKEAEVKNTFWNCPCVPMRERKECHCMLFLTPDNDFAGEKQDI 108          
BLAST of mRNA_L-elsbetiae_contig1369.2801.1 vs. uniprot
Match: FTRC_NEOYE (Ferredoxin-thioredoxin reductase, catalytic chain n=11 Tax=Bangiaceae TaxID=31345 RepID=FTRC_NEOYE)

HSP 1 Score: 154 bits (389), Expect = 1.720e-46
Identity = 65/101 (64.36%), Postives = 84/101 (83.17%), Query Frame = 1
Query:   13 LSFSKSFESMHKFAEIYAKQTNTFFCIDPSITSVVINGLANYKEKYGAPLCPCRNYDNINGEIKLSYWNCPCVPMRERKECHCKLFLTSDDDYASQLQTID 315
            +SF ++ E+M KF+E YAK+T TFFCID S+T+VVI GLA +K++YGAPLCPCR+Y++   EI  +YWNCPCVPMRER+ECHC LFLT D+++AS LQ ID
Sbjct:    7 VSFPENLEAMRKFSETYAKRTGTFFCIDSSVTAVVIEGLARHKDQYGAPLCPCRHYEDKKAEISATYWNCPCVPMRERRECHCMLFLTPDNEFASDLQEID 107          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1369.2801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FAQ0_9PHAE1.820e-5068.87Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A8F0F757_9PHAE8.400e-5070.59Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A2I4Q2F8_9PHAE1.740e-4869.70Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A261KS13_9CYAN1.210e-4765.05Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A0U2I037_GUITH2.550e-4767.35Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A8E6D4Y1_9PHAE3.480e-4769.39Ferredoxin-thioredoxin reductase beta subunit n=1 ... [more]
A0A075W3M9_GALSU4.360e-4765.71Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A6B3MAV2_9CYAN6.140e-4763.00Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
A0A0F5YN27_9CYAN1.410e-4664.08Ferredoxin-thioredoxin reductase, catalytic chain ... [more]
FTRC_NEOYE1.720e-4664.36Ferredoxin-thioredoxin reductase, catalytic chain ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1369contigL-elsbetiae_contig1369:1332..1664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score155.2
Seed ortholog evalue1.8e-35
Seed eggNOG ortholog203124.Tery_1567
Preferred nameftrC
KEGG koko:K17892
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0015979,GO:0016491,GO:0016730,GO:0022900,GO:0030385,GO:0044237,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055114
EggNOG free text desc.Catalytic subunit of the ferredoxin-thioredoxin reductase (FTR), which catalyzes the two-electron reduction of thioredoxins by the electrons provided by reduced ferredoxin
EggNOG OGs1G5P6@1117,1HBB5@1150,COG4802@1,COG4802@2
EC1.8.7.2
COG Functional cat.C
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size333
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.6153557-CDS-L-elsbetiae_contig1369:1331..16641622815532.6153557-CDS-L-elsbetiae_contig1369:1331..1664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1369 1332..1664 -
1691682944.46399-CDS-L-elsbetiae_contig1369:1331..16641691682944.46399-CDS-L-elsbetiae_contig1369:1331..1664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1369 1332..1664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1369.2801.1prot_L-elsbetiae_contig1369.2801.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1369 1332..1664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1369.2801.1

>prot_L-elsbetiae_contig1369.2801.1 ID=prot_L-elsbetiae_contig1369.2801.1|Name=mRNA_L-elsbetiae_contig1369.2801.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MNKNLSFSKSFESMHKFAEIYAKQTNTFFCIDPSITSVVINGLANYKEKY
GAPLCPCRNYDNINGEIKLSYWNCPCVPMRERKECHCKLFLTSDDDYASQ
LQTIDIKEFF*
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mRNA from alignment at L-elsbetiae_contig1369:1332..1664-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1369.2801.1 ID=mRNA_L-elsbetiae_contig1369.2801.1|Name=mRNA_L-elsbetiae_contig1369.2801.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=333bp|location=Sequence derived from alignment at L-elsbetiae_contig1369:1332..1664- (Laminarionema elsbetiae ELsaHSoW15)
ATGAATAAAAATTTAAGTTTTTCTAAAAGTTTTGAATCAATGCATAAATT TGCAGAAATTTATGCAAAACAAACAAATACTTTTTTTTGTATAGATCCAT CAATTACATCAGTAGTTATTAATGGTTTAGCAAATTATAAAGAAAAGTAT GGAGCTCCATTATGTCCATGTAGAAATTATGATAATATTAATGGTGAAAT AAAATTAAGTTATTGGAACTGTCCTTGTGTGCCTATGCGTGAACGTAAAG AATGTCATTGTAAATTGTTTTTAACTTCTGATGATGACTATGCGTCACAA TTACAAACTATTGATATAAAAGAATTTTTTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1369:1332..1664-

>mRNA_L-elsbetiae_contig1369.2801.1 ID=mRNA_L-elsbetiae_contig1369.2801.1|Name=mRNA_L-elsbetiae_contig1369.2801.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig1369:1332..1664- (Laminarionema elsbetiae ELsaHSoW15)
ATGAATAAAAATTTAAGTTTTTCTAAAAGTTTTGAATCAATGCATAAATT
TGCAGAAATTTATGCAAAACAAACAAATACTTTTTTTTGTATAGATCCAT
CAATTACATCAGTAGTTATTAATGGTTTAGCAAATTATAAAGAAAAGTAT
GGAGCTCCATTATGTCCATGTAGAAATTATGATAATATTAATGGTGAAAT
AAAATTAAGTTATTGGAACTGTCCTTGTGTGCCTATGCGTGAACGTAAAG
AATGTCATTGTAAATTGTTTTTAACTTCTGATGATGACTATGCGTCACAA
TTACAAACTATTGATATAAAAGAATTTTTTTAAATGAATAAAAATTTAAG
TTTTTCTAAAAGTTTTGAATCAATGCATAAATTTGCAGAAATTTATGCAA
AACAAACAAATACTTTTTTTTGTATAGATCCATCAATTACATCAGTAGTT
ATTAATGGTTTAGCAAATTATAAAGAAAAGTATGGAGCTCCATTATGTCC
ATGTAGAAATTATGATAATATTAATGGTGAAATAAAATTAAGTTATTGGA
ACTGTCCTTGTGTGCCTATGCGTGAACGTAAAGAATGTCATTGTAAATTG
TTTTTAACTTCTGATGATGACTATGCGTCACAATTACAAACTATTGATAT
AAAAGAATTTTTTTAA
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