mRNA_L-elsbetiae_contig1366.2784.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1366.2784.1
Unique NamemRNA_L-elsbetiae_contig1366.2784.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1366.2784.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.300e-24
Identity = 51/88 (57.95%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    7 ATFVGNIAGDIGPAVHSLGLAPKILNTTFDYNTKYCDPGEYAYDIRASEDEVHDTCRFDVVCSGCATSCDEIPESVNVLNDTSVPICK 270
            +TFVGN A D G AV SLG+A  I +TTF+ NT YC  G+Y Y+    EDEV  TCRF VVCS CA SC++ P SV V+ND  VPIC+
Sbjct:  507 STFVGNRARDAGLAVQSLGIAGNITDTTFESNTYYCSSGQYGYEYEIGEDEVSGTCRFGVVCSSCAASCEDNPGSVVVVNDAHVPICE 594
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BLAST of mRNA_L-elsbetiae_contig1366.2784.1 vs. uniprot
Match: D7FPF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF6_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 3.710e-23
Identity = 51/90 (56.67%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 SNATFVGNIAGDIGPAVHSLGLAPKILNTTFDYNTKYCDPGEYAYDIRASEDEVHDTCRFDVVCSGCATSCDEIPESVNVLNDTSVPICK 270
            ++ TFVGN AG  G AV SL          F+ NT YC  G+Y YDI A EDEV  TCRFD VC+GCA SC EIPESV V ND  VP+C+
Sbjct:  461 ADTTFVGNRAGAAGLAVASLXXXXXXXXXXFESNTYYCQSGQYGYDISADEDEVSGTCRFDEVCTGCAVSCAEIPESVVVANDAFVPMCE 550
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BLAST of mRNA_L-elsbetiae_contig1366.2784.1 vs. uniprot
Match: A0A6H5JUB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB2_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 3.250e-19
Identity = 49/90 (54.44%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 SNATFVGNIAGDIGPAVHSLGLAPKILNTTFDYNTKYCDPGEYAYDIRASEDEVHDTCRFDVVCSGCATSCDEIPESVNVLNDTSVPICK 270
            ++ TFVGN AG  G AV SLG+   + +TTF+ NT YC  G+Y  DI A EDEV  T RFD VC+ CA S  EIPES+ V N+  VPIC+
Sbjct:  253 ADTTFVGNRAGAAGLAVSSLGIIENLTDTTFESNTYYCQSGQY--DIGADEDEVSGTYRFDEVCTCCAVSNAEIPESMVVANNAFVPICE 340
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1366.2784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JWI3_9PHAE1.300e-2457.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPF6_ECTSI3.710e-2356.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUB2_9PHAE3.250e-1954.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1366contigL-elsbetiae_contig1366:4050..5311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size275
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.2325313-CDS-L-elsbetiae_contig1366:4050..41641622815531.2325313-CDS-L-elsbetiae_contig1366:4050..4164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1366 4051..4164 -
1691682943.6674592-CDS-L-elsbetiae_contig1366:4050..41641691682943.6674592-CDS-L-elsbetiae_contig1366:4050..4164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1366 4051..4164 -
1622815531.2443886-CDS-L-elsbetiae_contig1366:5152..53111622815531.2443886-CDS-L-elsbetiae_contig1366:5152..5311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1366 5153..5311 -
1691682943.6783175-CDS-L-elsbetiae_contig1366:5152..53111691682943.6783175-CDS-L-elsbetiae_contig1366:5152..5311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1366 5153..5311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1366.2784.1prot_L-elsbetiae_contig1366.2784.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1366 4051..5311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1366.2784.1

>prot_L-elsbetiae_contig1366.2784.1 ID=prot_L-elsbetiae_contig1366.2784.1|Name=mRNA_L-elsbetiae_contig1366.2784.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
SNATFVGNIAGDIGPAVHSLGLAPKILNTTFDYNTKYCDPGEYAYDIRAS
EDEVHDTCRFDVVCSGCATSCDEIPESVNVLNDTSVPICKA
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mRNA from alignment at L-elsbetiae_contig1366:4050..5311-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1366.2784.1 ID=mRNA_L-elsbetiae_contig1366.2784.1|Name=mRNA_L-elsbetiae_contig1366.2784.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1262bp|location=Sequence derived from alignment at L-elsbetiae_contig1366:4050..5311- (Laminarionema elsbetiae ELsaHSoW15)
TCAAACGCCACTTTCGTCGGAAACATTGCCGGCGATATTGGCCCGGCGGT
TCATAGTCTCGGACTTGCACCCAAAATTTTGAATACCACCTTCGACTACA
ACACGAAGTACTGCGATCCTGGGGAATACGCCTACGACATTCGTGCATCT
GAAGACGAGGTGAGTATCACACATCTTCAACGTTTATTGGAATTTCGTAC
GTGGTAAGACAATTGTCGGCAATTATTTGTACTGGCGCACCCTTTCTGAG
AATAGACGCTCACTTTGCCAATAGGATGCTGACTTTATAATGAAGCTTCA
ACAGGGCGCTTCCTGAATTCGATCCATCACTGACTCGACGTCTATTTCTT
TGCACCGCCCACCAGCCATGCACTCAGCTGTGCACTGGCGGGGTTTCTTG
TCCGGCGAAAACCAGCCATGCTACTTGAATTTTCTCTTTGAATGTGCGAA
TTTGTTATAATGTTGTGGCGTACCGCTCATGGTGCGGGAATCCGGCGGTG
TTCCTGGTCCTGACGTATACGCATCTCGGAAATCAGGAGTTTGAGCAATT
TTTGCTTGCGACAACCCAGGGCTGGAGGGCACGGGCAACGCTTGTCGCGG
TTGAACATTATATTTGCTATTTGGTCCTTACAGGCCTCTGCCCAGCTGGC
TCCTTCGCCTGCAGATGGGGGATCAACTGACCCAGCGTGTTGACAACAAT
TGTTTGGGCATTGTGGTCGCCCAGGTGGTCTAGTTGTTAACTCGGTAACC
TGCTGGCGGCAAGGTCCGGAGTTCGGTTGCCAGTGGAAAGCATGCACCGC
AGGAGGGTGGGTGGGGGCGTCAGGGAGAGGACCACGGATCAGAGCTCTGG
CTCAAAGTCCCTGCGAGCGATGGTATAAAGTGATAAATGTACCATTTTCG
CTGTGGTTGGCAGTTAGTTACGTGCGTGAGATGTCCAGGGGATTTTCGGG
GGATTCCCCGAGGGCAAACCGGCCTCCGACTTAAGAACGCCTTGCTCCCT
CAAAAAAACTTGTTGTTTCCCCGGAGGGCTGTAGGGGACGTTTGACTGAC
TTTCCAAGAGACCATCCTCTTTGAGTTACTGGTACGAGCTCCGCTGTTGA
GAATCAACCACCTTCGGCTTTACCTTGCTCTTGGTTTCGCGTGGCAGGTT
CATGACACGTGTCGTTTTGACGTGGTCTGCTCAGGCTGCGCAACTTCATG
TGATGAAATACCGGAGAGCGTCAACGTGCTCAATGACACTTCCGTGCCAA
TATGCAAAGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1366:4050..5311-

>mRNA_L-elsbetiae_contig1366.2784.1 ID=mRNA_L-elsbetiae_contig1366.2784.1|Name=mRNA_L-elsbetiae_contig1366.2784.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig1366:4050..5311- (Laminarionema elsbetiae ELsaHSoW15)
TCAAACGCCACTTTCGTCGGAAACATTGCCGGCGATATTGGCCCGGCGGT
TCATAGTCTCGGACTTGCACCCAAAATTTTGAATACCACCTTCGACTACA
ACACGAAGTACTGCGATCCTGGGGAATACGCCTACGACATTCGTGCATCT
GAAGACGAGTCAAACGCCACTTTCGTCGGAAACATTGCCGGCGATATTGG
CCCGGCGGTTCATAGTCTCGGACTTGCACCCAAAATTTTGAATACCACCT
TCGACTACAACACGAAGTACTGCGATCCTGGGGAATACGCCTACGACATT
CGTGCATCTGAAGACGAGGTTCATGACACGTGTCGTTTTGACGTGGTCTG
CTCAGGCTGCGCAACTTCATGTGATGAAATACCGGAGAGCGTCAACGTGC
TCAATGACACTTCCGTGCCAATATGCAAAGCGGTTCATGACACGTGTCGT
TTTGACGTGGTCTGCTCAGGCTGCGCAACTTCATGTGATGAAATACCGGA
GAGCGTCAACGTGCTCAATGACACTTCCGTGCCAATATGCAAAGCG
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