mRNA_L-elsbetiae_contig1365.2775.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1365.2775.1
Unique NamemRNA_L-elsbetiae_contig1365.2775.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1365.2775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1365contigL-elsbetiae_contig1365:12966..13799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_002690.1
Exons1
Model size834
Cds size834
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815530.665067-CDS-L-elsbetiae_contig1365:12965..137991622815530.665067-CDS-L-elsbetiae_contig1365:12965..13799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1365 12966..13799 -
1691682943.3281639-CDS-L-elsbetiae_contig1365:12965..137991691682943.3281639-CDS-L-elsbetiae_contig1365:12965..13799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1365 12966..13799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1365.2775.1prot_L-elsbetiae_contig1365.2775.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1365 12966..13799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1365.2775.1

>prot_L-elsbetiae_contig1365.2775.1 ID=prot_L-elsbetiae_contig1365.2775.1|Name=mRNA_L-elsbetiae_contig1365.2775.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=278bp
MTTSNPLGSRTDVISDVLAYCPLNNFLYLAGVSKTWRAVWLTAHGQHKHT
AISMAVSSPARTKWVLDDEMFWLTAEPKETVLVPTTDKMNTNYSNSSGNI
FLMFAASGNLFGLEAAARKLRWNDNSLLRSSNHLLKPGRTSHSNCFARRR
VPEIAADIGHLEMLKWAVCQEGCPLNPSVWFFVARRGRLDVLEWLHRRGC
PSDLYSCTAGAASGGKLAALKWSRQRGHGWDRFVCFSAAHLGNLEMLRWA
TRQGCPWDKHQCASIARANGHHNVVEWL
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mRNA from alignment at L-elsbetiae_contig1365:12966..13799-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1365.2775.1 ID=mRNA_L-elsbetiae_contig1365.2775.1|Name=mRNA_L-elsbetiae_contig1365.2775.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig1365:12966..13799- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGACCAGTAATCCGTTGGGCAGCCGCACAGATGTCATATCAGATGT
GCTGGCTTACTGCCCGCTGAACAACTTCCTCTACCTCGCGGGCGTGAGCA
AGACATGGCGAGCGGTGTGGCTGACAGCCCACGGCCAGCACAAACACACA
GCGATTTCGATGGCCGTCTCAAGCCCGGCCAGAACGAAGTGGGTCCTGGA
TGATGAAATGTTTTGGCTGACTGCGGAACCAAAAGAAACAGTTTTGGTGC
CGACAACAGACAAGATGAACACCAATTACTCCAACAGCAGTGGCAACATA
TTCCTCATGTTCGCGGCCTCGGGGAATCTATTCGGTCTTGAAGCGGCGGC
GAGGAAGCTCAGATGGAACGACAACAGTTTGCTTCGGAGCAGCAACCATC
TTCTCAAGCCTGGGCGCACAAGCCACAGCAATTGTTTTGCTCGACGACGC
GTTCCAGAAATCGCGGCCGACATCGGGCACCTCGAAATGCTGAAATGGGC
CGTATGTCAAGAGGGGTGCCCGTTGAACCCGAGCGTCTGGTTTTTCGTCG
CTAGGAGGGGAAGGTTAGACGTGCTAGAATGGCTGCATAGGCGTGGGTGT
CCGTCCGACTTATACAGCTGCACGGCCGGCGCGGCATCGGGCGGAAAACT
AGCAGCGCTGAAGTGGTCGAGGCAGCGGGGGCACGGGTGGGACAGGTTCG
TCTGCTTCTCTGCGGCTCACCTAGGCAATCTGGAGATGCTTCGCTGGGCA
ACTAGACAAGGGTGCCCGTGGGACAAGCATCAGTGCGCCAGTATCGCCAG
GGCCAACGGGCACCACAATGTCGTAGAGTGGTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1365:12966..13799-

>mRNA_L-elsbetiae_contig1365.2775.1 ID=mRNA_L-elsbetiae_contig1365.2775.1|Name=mRNA_L-elsbetiae_contig1365.2775.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1668bp|location=Sequence derived from alignment at L-elsbetiae_contig1365:12966..13799- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGACCAGTAATCCGTTGGGCAGCCGCACAGATGTCATATCAGATGT
GCTGGCTTACTGCCCGCTGAACAACTTCCTCTACCTCGCGGGCGTGAGCA
AGACATGGCGAGCGGTGTGGCTGACAGCCCACGGCCAGCACAAACACACA
GCGATTTCGATGGCCGTCTCAAGCCCGGCCAGAACGAAGTGGGTCCTGGA
TGATGAAATGTTTTGGCTGACTGCGGAACCAAAAGAAACAGTTTTGGTGC
CGACAACAGACAAGATGAACACCAATTACTCCAACAGCAGTGGCAACATA
TTCCTCATGTTCGCGGCCTCGGGGAATCTATTCGGTCTTGAAGCGGCGGC
GAGGAAGCTCAGATGGAACGACAACAGTTTGCTTCGGAGCAGCAACCATC
TTCTCAAGCCTGGGCGCACAAGCCACAGCAATTGTTTTGCTCGACGACGC
GTTCCAGAAATCGCGGCCGACATCGGGCACCTCGAAATGCTGAAATGGGC
CGTATGTCAAGAGGGGTGCCCGTTGAACCCGAGCGTCTGGTTTTTCGTCG
CTAGGAGGGGAAGGTTAGACGTGCTAGAATGGCTGCATAGGCGTGGGTGT
CCGTCCGACTTATACAGCTGCACGGCCGGCGCGGCATCGGGCGGAAAACT
AGCAGCGCTGAAGTGGTCGAGGCAGCGGGGGCACGGGTGGGACAGGTTCG
TCTGCTTCTCTGCGGCTCACCTAGGCAATCTGGAGATGCTTCGCTGGGCA
ACTAGACAAGGGTGCCCGTGGGACAAGCATCAGTGCGCCAGTATCGCCAG
GGCCAACGGGCACCACAATGTCGTAGAGTGGTTGATGACGACCAGTAATC
CGTTGGGCAGCCGCACAGATGTCATATCAGATGTGCTGGCTTACTGCCCG
CTGAACAACTTCCTCTACCTCGCGGGCGTGAGCAAGACATGGCGAGCGGT
GTGGCTGACAGCCCACGGCCAGCACAAACACACAGCGATTTCGATGGCCG
TCTCAAGCCCGGCCAGAACGAAGTGGGTCCTGGATGATGAAATGTTTTGG
CTGACTGCGGAACCAAAAGAAACAGTTTTGGTGCCGACAACAGACAAGAT
GAACACCAATTACTCCAACAGCAGTGGCAACATATTCCTCATGTTCGCGG
CCTCGGGGAATCTATTCGGTCTTGAAGCGGCGGCGAGGAAGCTCAGATGG
AACGACAACAGTTTGCTTCGGAGCAGCAACCATCTTCTCAAGCCTGGGCG
CACAAGCCACAGCAATTGTTTTGCTCGACGACGCGTTCCAGAAATCGCGG
CCGACATCGGGCACCTCGAAATGCTGAAATGGGCCGTATGTCAAGAGGGG
TGCCCGTTGAACCCGAGCGTCTGGTTTTTCGTCGCTAGGAGGGGAAGGTT
AGACGTGCTAGAATGGCTGCATAGGCGTGGGTGTCCGTCCGACTTATACA
GCTGCACGGCCGGCGCGGCATCGGGCGGAAAACTAGCAGCGCTGAAGTGG
TCGAGGCAGCGGGGGCACGGGTGGGACAGGTTCGTCTGCTTCTCTGCGGC
TCACCTAGGCAATCTGGAGATGCTTCGCTGGGCAACTAGACAAGGGTGCC
CGTGGGACAAGCATCAGTGCGCCAGTATCGCCAGGGCCAACGGGCACCAC
AATGTCGTAGAGTGGTTG
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