mRNA_L-elsbetiae_contig13600.2747.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13600.2747.1
Unique NamemRNA_L-elsbetiae_contig13600.2747.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig13600.2747.1 vs. uniprot
Match: A0A6H5JCH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH5_9PHAE)

HSP 1 Score: 387 bits (995), Expect = 1.840e-124
Identity = 241/469 (51.39%), Postives = 265/469 (56.50%), Query Frame = 2 
Query:  212 GAARQASEGVFPSVARMPLPPGGEIYEGEKKEKEKREDSDFNRRVGKVISTLRQDYPIMFDEPLDFDIYTPDLQLRDPSGVVLTGLPAYKRMFATFRFARKTVVHDLSTVFRISYDGSRQQ---------------------------------------VRVTWHFILDATPVVARPIHVDGVSVYSLSTQGLVRRHDVETIIVNGTPVKPPFAQAWMQLPPWVTQGLKGGAAGAPGLTSXXXXXXXXXXXXXXXXXXXXXXXXXGGRMRIRIPMPVMPSGPDGATLAVQGLATVAGRRRWGGESMIAAATAGRAGLAVDVSSSGSGGGAGSIWRASSEETGRGLEGKDGPEGGGEEAGSSGSRDEESGTTDSRAHDRKGAKKKK-------------------KKFWPIEYDGPLGCETSFDCTGGYVCCDLLVVKICCSNGVMQRKPGDLIPSLIPIPGRGRNEND 1444
            GAA QAS+GVFPSVAR P+P  GEIYEGEKKEKEKRE ++FN  +GKVI TLR+DYP M DEPL+FDIYTPDLQLRDPSGV+LTGLPAYKRMF TFRF RKT+VHD+STVFR+SYDGSRQQ                                       VRVTWH +LDATP+VARP+H+DG SVY LST+GLVRRHD+ETIIVNGTPVKPPFAQAWMQLP WVTQG  GG AGAPG+TS                         GG+   RIPM +      G  +A QGLA V            A+ T  R GL   V    S                                                                              K  WPI+Y GPL CETSFDCTGGYVCCDL+VVKICCSNGVMQRKPGDLIPSLIPIPGRGR E D
Sbjct:   71 GAASQASQGVFPSVARSPMP-AGEIYEGEKKEKEKREQAEFNTNLGKVIDTLREDYPTMLDEPLNFDIYTPDLQLRDPSGVILTGLPAYKRMFGTFRFVRKTLVHDVSTVFRLSYDGSRQQDDEQLLVHPCEMQPWTGRNDWPSVIGSVGNNAPSSRGRVVRVTWHLVLDATPMVARPVHLDGTSVYGLSTEGLVRRHDLETIIVNGTPVKPPFAQAWMQLPSWVTQGRSGGVAGAPGMTSVSSSGGVRGEIDDFDRSGRRS----GGKFERRIPMDL-----SGTAMAFQGLAEV----------RAASITRRRKGLLAAVGFDASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMWPIDYKGPLACETSFDCTGGYVCCDLVVVKICCSNGVMQRKPGDLIPSLIPIPGRGRTELD 519
[Close]
BLAST of mRNA_L-elsbetiae_contig13600.2747.1 vs. uniprot
Match: D8LJ76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ76_ECTSI)

HSP 1 Score: 377 bits (969), Expect = 6.840e-123
Identity = 217/391 (55.50%), Postives = 239/391 (61.13%), Query Frame = 2 
Query:  272 PGGEIYEGEKKEKEKREDSDFNRRVGKVISTLRQDYPIMFDEPLDFDIYTPDLQLRDPSGVVLTGLPAYKRMFATFRFARKTVVHDLSTVFRISYDGSRQQVRVTWHFILDATPVVARPIHVDGVSVYSLSTQGLVRRHDVETIIVNGTPVKPPFAQAWMQLPPWVTQGLKGGAAGAPGLTSXXXXXXXXXXXXXXXXXXXXXXXXXGGRMRIRIPMPVMPSGPDGATLAVQGLATVAGRRRWGGESMIAAATAGRAGLAVDVSSSGSGGGAGSIWRASSEETGRGLEGKDGPEGGGEEAGSSGSRDEESGTTDSRAHDRKGAKKKKKKFWPIEYDGPLGCETSFDCTGGYVCCDLLVVKICCSNGVMQRKPGDLIPSLIPIPGRGRNEND 1444
            P GEIYEGEK EKEKRE ++FN  +GKVI TLR+DY  M DEPL+F+IYTPDLQLRDPSGVVLTGLPAYKRMF TFRF RKT+VHD+STVFR+SYDGSRQQVR+TWH +LDATP+V RP+H+DG SVY LST+GLVRRHDVETIIVNGTPVKPPFAQAWMQLP WVTQG  GG AGAPG+ S                         GG    RIP+ +      G  +A QGLA V             AA+  R                                                                       K  WPI+Y GPL CETSFDCTGGYVCCDL+VVKICCSNGVMQRKPGDLIPSLIPIPGRGR E D
Sbjct:    2 PAGEIYEGEKNEKEKREQTEFNTNLGKVIDTLREDYATMLDEPLNFEIYTPDLQLRDPSGVVLTGLPAYKRMFGTFRFVRKTLVHDVSTVFRLSYDGSRQQVRITWHLVLDATPMVVRPVHLDGTSVYGLSTEGLVRRHDVETIIVNGTPVKPPFAQAWMQLPSWVTQGRSGGVAGAPGMISVSSSSGDVWGGMDDFNRSGRRRS--GGNFERRIPVDL-----SGTAMAFQGLAGVR------------AASITRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------XXXXXXXXXXXXXXXXXKGMWPIDYKGPLACETSFDCTGGYVCCDLVVVKICCSNGVMQRKPGDLIPSLIPIPGRGRTELD 354
[Close]
BLAST of mRNA_L-elsbetiae_contig13600.2747.1 vs. uniprot
Match: A0A6H5KRU5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRU5_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 1.130e-59
Identity = 157/428 (36.68%), Postives = 213/428 (49.77%), Query Frame = 2 
Query:  218 ARQASEGVFPSVARMPLPPGGEIYEGEK----KEKEKREDSDFNRRVGKVISTLRQDYPIMFDEPLDFDIYTPDLQLRDPSGVVLTGLPAYKRMFATFRFARKTVVHDLSTVFRISYDGSRQQVRVTWHFILDATPVVARPIHVDGVSVYSLSTQGLVRRHDVETIIVNGTPVKPPFAQAWMQLPPWVTQGLKGGAAGAPGLTSXXXXXXXXXXXXXXXXXXXXXXXXXGGRMRIRIPMPVMPSGPDGATLAVQGLATVAGR-RRWGGESMIAAATAGRAGLAVD---VSSSGSGGGAGSIWRASSEETGRGLEGKDGPEGGGEEAGSSGSRDEESGTTDSRAHDRKGAKKKKKKFWPIEYDGPLGCETSFDCTGGYVCCDLLVVKICCSNGVMQRKPGDLIPSLIPIPGRGRNENDNPPKRTPRGNA 1477
            A+ AS  +FPS+ R P P G    +G +    +E++  +  DF   +GKVISTLR+DYP +F +P  FDI+T +++LRDP+GV   G+  YKR+FAT RF R+T ++D +T FR++YD S+QQVRVTW+ +L       RPI+VDG+S Y +++ GL  RHD+ET++VNG  V+PPFA AW+ LP WV++G     +GA                              GG      P  +       A  AV  +   A       G+ M A +T     L +D   VS SG                                                         K     W       L CETS+DCTGG VCCD +++K+CCSNG+ Q K G+LIPSL+PIPGRGRNENDNP +  P G  
Sbjct:   93 AQLASSLIFPSITRQPRP-GIIARDGTEDLGMRERDDGKSPDFEVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLK-ARQRPIYVDGISAYHINSDGLAHRHDLETVVVNGRAVEPPFAYAWINLPAWVSRGAVAKPSGA-------------------GAALPTPHAVIGGA-----PTQLFEQQQGEAEDAVGAMFDAARTDSELRGDYMQALSTV----LMMDTDGVSESGXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------XXXXXXXXXXXXXXXXXXXKNNAGGWFGSKGAELACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKFGELIPSLVPIPGRGRNENDNPKRIPPAGGT 479
[Close]
BLAST of mRNA_L-elsbetiae_contig13600.2747.1 vs. uniprot
Match: A0A836CIZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ0_9STRA)

HSP 1 Score: 139 bits (350), Expect = 5.870e-33
Identity = 69/150 (46.00%), Postives = 91/150 (60.67%), Query Frame = 2 
Query:  260 MPLPPGGEIYEGEKKEKEKREDSDFNRRVGKVISTLRQDYPIMFDEPLDFDIYTPDLQLRDPSGVVLTGLPAYKRMFATFRFARKTVVHDLSTVFRISYDGSRQQVRVTWHFILDATPVVARPIHVDGVSVYSLSTQGLVRRHDVETIIV 709
            MP PP G              + DF   +GKVI TLR DYP + +EPLD+ IYT D+ ++DPSGV   G+  YKR+FAT RF R T V  + T FR++YD +RQ+VRV WH  L        P+ VD +SVY ++ +G V  HD+ETI+V
Sbjct:   28 MPPPPNGN------------RNPDFEPNLGKVIDTLRSDYPELLNEPLDYSIYTDDITVKDPSGVEFKGIGTYKRLFATLRFFRHTFVDTVDTRFRVTYDWARQRVRVNWHMALSFKARAGHPVFVDCISVYHINDEGFVSAHDLETIMV 165
[Close]
BLAST of mRNA_L-elsbetiae_contig13600.2747.1 vs. uniprot
Match: A0A8J5XCD4_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XCD4_DIALT)

HSP 1 Score: 108 bits (271), Expect = 2.560e-22
Identity = 57/143 (39.86%), Postives = 83/143 (58.04%), Query Frame = 2 
Query:  311 EKREDSDFNRRVGKVISTLRQDYPIMFDEPLDFDIYTPDLQLRDPSGVVLTGLPAYKRMFATFRFARKTVVHDLSTVFRISYDG-SRQQVRVTWHFILDATPVVARPIHVDGVSVYSLSTQGLVRRHDVETIIVNGTPVKPPF 736
            E++  ++F   VGKVI TL+ DYP++F++  DF I+   ++L DPSGV + GL  Y+  F   R  R T+        ++ Y G    +VRV W+    +     R   +DGVS Y+LS +GLVRRH ++ IIVNG  V+ PF
Sbjct:   65 ERKRQTEFRLNVGKVIDTLQTDYPVLFEQSPDFSIFESCIELTDPSGVSIRGLSMYRSCFTLLRLMRYTMA-SAEMKCKVCYAGWDPYKVRVRWNLAFSSALSPGRTYFIDGVSAYTLSERGLVRRHSLDNIIVNGREVEQPF 206
[Close]
BLAST of mRNA_L-elsbetiae_contig13600.2747.1 vs. uniprot
Match: A0A1Z5KJP1_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJP1_FISSO)

HSP 1 Score: 104 bits (259), Expect = 1.160e-21
Identity = 56/146 (38.36%), Postives = 83/146 (56.85%), Query Frame = 2 
Query:  320 EDSDFNRRVGKVISTLRQDYPIMFDEPLDFDIYTPDLQLRDPSGVVLTGLPAYK------RMFATFRFARKTVVHDLSTVFRISYDGSRQQVRVTWHFILDATPVVARPIHVDGVSVYSLS-TQGLVRRHDVETIIVNGTPVKPPF 736
            E  +F   +G+ + TLR+D   +  E  DF IY  +L++ DPSGV L GL  YK      + F  F FA K VV       R+ YD  R  +R+ WH +L       RP+HVDG+S+Y+L  T GL+ +H +E +++N +P +PP+
Sbjct:   57 ERQEFQIHLGRAMDTLRKDMQNILTELPDFSIYHDELEVLDPSGVQLIGLEKYKSAIAFLQTFCRFWFAPKPVVQH-----RMVYDFCRSSIRIAWHAVLVPKVPWGRPLHVDGISLYTLDPTSGLISQHKIEKLVINQSPAQPPY 197
[Close]
BLAST of mRNA_L-elsbetiae_contig13600.2747.1 vs. uniprot
Match: A0A7R9WVZ4_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WVZ4_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.980e-19
Identity = 57/170 (33.53%), Postives = 88/170 (51.76%), Query Frame = 2 
Query:  248 SVARMPLPPGGEIYEGEKKEKEKREDSDFNRRVGKVISTLRQDYPIMFDEPLDFDIYTPDLQLRDPSGVVLTGLPAYK------RMFATFRFARKTVVHDLSTVFRISYDGSRQQVRVTWHFILDATPVVARPIHVDGVSVYSLSTQ-GLVRRHDVETIIVNGTPVKPPF 736
            SV +  LPP       E++E        F   +GK + T+R+D P +     D+ IY  D+ + DPSGV + GL  YK      + F  F F  ++ +      FR+ YD  R  ++V+W+ +L     + RP++VDG+SVY L  + G +  H  E +I+N TPV PP+
Sbjct:   56 SVGQQQLPPVIRSIADERRE--------FQMNLGKAMDTIRKDMPEILRRKPDYSIYHKDITVVDPSGVTIQGLDNYKSSIKFLQTFLKFWFKERSGLQ-----FRMVYDFCRSSIKVSWNAVLIPKVPLGRPVYVDGISVYKLDVESGKIMEHKFENLIINNTPVVPPY 212
[Close]
BLAST of mRNA_L-elsbetiae_contig13600.2747.1 vs. uniprot
Match: A0A7S2NRZ5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NRZ5_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.720e-17
Identity = 50/143 (34.97%), Postives = 86/143 (60.14%), Query Frame = 2 
Query:  332 FNRRVGKVISTLRQDYPIMFDEPLDFDIYTPDLQLRDPSGVVLTGLPAYKRMFATFRFARKTVV----HDLSTV-FRISYDGSRQQVRVTWHFILDATPV--VARPIHVDGVSVYSL-STQGLVRRHDVETIIVNGTPVKPPF 736
            F   +GK + TLR+DYP M     +F+I++ D+ + DPSGV ++GL  YK   ++FRF +  +      D S +  R+ YD +R  +R++W+ +L    V  V   ++VDG+S+Y + ++ G +  H VE +++N  PV+PP+
Sbjct:   81 FELNLGKAMDTLRKDYPKMLTREPNFEIFSDDISVVDPSGVQISGLSNYK---SSFRFLQTLIKWFYNSDRSIIQHRMVYDWARSSIRISWNAVLVPKVVGNVRNSLYVDGISIYKMDASSGKIVEHKVEKMMINNIPVRPPY 220
[Close]
BLAST of mRNA_L-elsbetiae_contig13600.2747.1 vs. uniprot
Match: A0A0M0JBU2_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JBU2_9EUKA)

HSP 1 Score: 95.9 bits (237), Expect = 1.720e-17
Identity = 59/158 (37.34%), Postives = 85/158 (53.80%), Query Frame = 2 
Query:  311 EKREDSDFNRRVGKVISTLRQDYPIMFDEPLDFDIYTPDLQLRDPSGVVLTGLPAYKRMFATFRFARKTVVHDLSTVFRISYDGSRQQVRVTWH---FILD-----ATPVVARP--IHVDGVSVYSLSTQGLVRRHDVETIIVNG-----TPVKPPFA 739
            E+R  S F    G+ I  LR DYP +F E  D  I+T +++L DPSG  L G   Y+R+F   RF R+T + D     R+  D   + +RV W+   ++ D      T V   P  +H+DGVSVY L   GL+R+H +E I++ G     TP++  FA
Sbjct:   72 EQRGPSVFKLNQGRAIDVLRHDYPRLFTERPDMSIFTDNIELHDPSGKRLAGKKQYERVFDALRFLRRTTMQDAQVGIRLVADD--KSIRVRWNAKLWMRDPATGLTTLVNGEPALVHIDGVSVYDLDKDGLIRQHRLENIVLTGQEPLATPIQLAFA 227
[Close]
BLAST of mRNA_L-elsbetiae_contig13600.2747.1 vs. uniprot
Match: A0A7S0PU43_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PU43_9EUKA)

HSP 1 Score: 88.2 bits (217), Expect = 9.850e-16
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 2 
Query:  326 SDFNRRVGKVISTLRQDYPIMFDEPLDFDIYTPDLQLRDPSGVVLTGLPAYKRMFATFRFARKTVVHDLSTVFRISYDGSRQQVRVTWHFIL---DATPVVARPIHVDGVSVYSLSTQGLVRRHDVETIIVNG 715
            S+F    G+VI TLR DYP +F +  D  I+  D++LRD SGV L G  AY ++F   RF R+T + D    + I  + +   +R+ W   L   D    + R   +DGVSVY L + GLVR H +E I+  G
Sbjct:   89 SEFELNQGRVIDTLRYDYPRLFVDKPDLSIFREDVELRDESGVRLRGKGAYSKVFDMLRFLRRTGMSDAEVTYHIFVNDAT--IRMRWSAKLKLRDPAFGMQRLDILDGVSVYELDSDGLVRSHTLEYIVPRG 219
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13600.2747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCH5_9PHAE1.840e-12451.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ76_ECTSI6.840e-12355.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRU5_9PHAE1.130e-5936.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CIZ0_9STRA5.870e-3346.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J5XCD4_DIALT2.560e-2239.86Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A1Z5KJP1_FISSO1.160e-2138.36Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7R9WVZ4_9STRA3.980e-1933.53Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2NRZ5_9STRA1.720e-1734.97Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A0M0JBU2_9EUKA1.720e-1737.34Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A7S0PU43_9EUKA9.850e-1639.10Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13600contigL-elsbetiae_contig13600:1098..4580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score385.2
Seed ortholog evalue4.5e-104
Seed eggNOG ortholog2880.D8LJ76
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Uncharacterized conserved protein (DUF2358)
EggNOG OGs2CYHV@1,2S4H3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_005050.1
Exons3
Model size1923
Cds size1452
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13600.2747.1prot_L-elsbetiae_contig13600.2747.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13600 1538..4549 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815527.823367-UTR-L-elsbetiae_contig13600:1097..15371622815527.823367-UTR-L-elsbetiae_contig13600:1097..1537Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13600 1098..1537 -
1691682941.6930852-UTR-L-elsbetiae_contig13600:1097..15371691682941.6930852-UTR-L-elsbetiae_contig13600:1097..1537Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13600 1098..1537 -
1622815527.8783138-UTR-L-elsbetiae_contig13600:4549..45801622815527.8783138-UTR-L-elsbetiae_contig13600:4549..4580Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13600 4550..4580 -
1691682941.7399302-UTR-L-elsbetiae_contig13600:4549..45801691682941.7399302-UTR-L-elsbetiae_contig13600:4549..4580Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13600 4550..4580 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815527.8361769-CDS-L-elsbetiae_contig13600:1537..24461622815527.8361769-CDS-L-elsbetiae_contig13600:1537..2446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13600 1538..2446 -
1691682941.7131267-CDS-L-elsbetiae_contig13600:1537..24461691682941.7131267-CDS-L-elsbetiae_contig13600:1537..2446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13600 1538..2446 -
1622815527.8515637-CDS-L-elsbetiae_contig13600:2912..30411622815527.8515637-CDS-L-elsbetiae_contig13600:2912..3041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13600 2913..3041 -
1691682941.7230654-CDS-L-elsbetiae_contig13600:2912..30411691682941.7230654-CDS-L-elsbetiae_contig13600:2912..3041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13600 2913..3041 -
1622815527.8641944-CDS-L-elsbetiae_contig13600:4135..45491622815527.8641944-CDS-L-elsbetiae_contig13600:4135..4549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13600 4136..4549 -
1691682941.7315717-CDS-L-elsbetiae_contig13600:4135..45491691682941.7315717-CDS-L-elsbetiae_contig13600:4135..4549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13600 4136..4549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13600.2747.1

>prot_L-elsbetiae_contig13600.2747.1 ID=prot_L-elsbetiae_contig13600.2747.1|Name=mRNA_L-elsbetiae_contig13600.2747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=484bp
MRLLMGGSRQALLLACPVGMLMLCFRTGDGFSTQALVSTGGAAATACRDE
GGRALRCLPRGAARQASEGVFPSVARMPLPPGGEIYEGEKKEKEKREDSD
FNRRVGKVISTLRQDYPIMFDEPLDFDIYTPDLQLRDPSGVVLTGLPAYK
RMFATFRFARKTVVHDLSTVFRISYDGSRQQVRVTWHFILDATPVVARPI
HVDGVSVYSLSTQGLVRRHDVETIIVNGTPVKPPFAQAWMQLPPWVTQGL
KGGAAGAPGLTSSSSSSSGGGGGGVGSSCGSRRNSNNGGRMRIRIPMPVM
PSGPDGATLAVQGLATVAGRRRWGGESMIAAATAGRAGLAVDVSSSGSGG
GAGSIWRASSEETGRGLEGKDGPEGGGEEAGSSGSRDEESGTTDSRAHDR
KGAKKKKKKFWPIEYDGPLGCETSFDCTGGYVCCDLLVVKICCSNGVMQR
KPGDLIPSLIPIPGRGRNENDNPPKRTPRGNAR*
back to top

mRNA from alignment at L-elsbetiae_contig13600:1098..4580-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13600.2747.1 ID=mRNA_L-elsbetiae_contig13600.2747.1|Name=mRNA_L-elsbetiae_contig13600.2747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3483bp|location=Sequence derived from alignment at L-elsbetiae_contig13600:1098..4580- (Laminarionema elsbetiae ELsaHSoW15)
GCTGACAACGCTGTGCATCAGTGGCACTGCGATGCGATTGCTCATGGGTG
GCTCTCGGCAAGCGCTTCTGCTGGCGTGCCCGGTAGGAATGCTGATGCTG
TGTTTCCGGACTGGAGATGGATTTTCAACCCAGGCCTTGGTCAGCACTGG
TGGGGCTGCAGCAACAGCATGCAGAGACGAGGGAGGGCGAGCCTTGCGCT
GCTTACCACGCGGTGCTGCGAGACAGGCATCCGAGGGTGTGTTCCCCTCG
GTGGCGAGGATGCCATTGCCTCCTGGTGGAGAGATCTACGAAGGGGAGAA
GAAGGAGAAAGAAAAGAGGGAGGACAGCGACTTCAACAGGCGGGTAGGGA
AAGTCATCTCCACGTTGAGGCAAGACTACCCGATCATGTTTGATGAGCCT
CTGGACTTTGACATCTACACTCCTGATTTGCAGCTGCGAGATCCGGTGAG
CTTATCATTGATGCTCTTGTTATTGCTGTTGCTATTGCTGTTGGCTTCGT
CGTTTTTTGCGCTGTTGTTGTTGTTGCCGTTGTTGTTGACACTCGTTGCA
GGTTGCTACTACTGAATGTGACTCTCCCAGCTTCCTCATGTATCGTAGAG
GTGTGTACCATTCGTACTCGCGGACGGGGCTGAATGGTGCACTGCAGACA
CTTCAATACAGTAGAAGCGCAGTTGGTGCAATTAGTAGTCTCGGTAGGGG
GGTGAAACAGCTTGCCCGTCCATTGGTACTAACTGGTACACCATTCACAT
ACATGCTTGCAGCCGTAAACACTAGACTAAAGCGCAAGCGTCTCTCTTGA
CAGCATAAGGTACGGCGGTATATGCTACTACTACTACTGTTGTAATCTAG
TCACGTATTATATTTTGTGTGTTTCCATGCGGCTGAGCCACCATTCCCTT
CGTACGGCACGCCGAGTTGCGTGCCAACCATAACAATCATCGCGCTTCGT
CGATGAGACACAACCAGCAGAGATTGGCTGCCCTTGGATTGTTTTGTTTG
CTACCATCTATTTTACGGGCACGGTTCGCTGATGTTGCTCCTGGAGCGCA
GTCAGTACATACGGCGTGCATATGTACATGTGTATAAATACTATTTCGGT
ACTCCAACCCCGAAATACTATTATGTGACCTCTTTTTTTTTAAACCAAAA
AAGTGTGCTGCGTTTTCGACACTCTACGCACGGGGACTGCTGTGTGTGTT
CCGAGGCCGGGTCGACGGCGAAAGTTTTTTTCGCACGTGCAAATGCGCTT
ATCACTGCCCGAACGCCACAGGTCTTGCAGCAAACAGCTGATACCAAATA
TTTTAAGTTTTGCAGCAGAGCCTGAAAGCTTGACCGGCTGAATTTCGGGT
CGAGTGATGCGTTCCAAGGAACATCTTGCTGTATGGTCGTGGTAGTTGTT
CGCATCTTCGCGTTTCCACGGTTCTGATCACGCCAGTATATGTACCCAGT
GTCTTCACGTTCCGCACTACTGCTGTGTATGACTGGAAAGAGCCTTCTCC
GAACCCCCCCGACACGCCTATGATACCACAACCCTCCAGTCCGGCGTGGT
TCTGACGGGGCTGCCAGCGTACAAGAGGATGTTTGCGACGTTCCGCTTCG
CGCGGAAGACCGTTGTCCACGACCTTTCCACGGTGTTCCGCATCTCCTAC
GACGGGTCACGGCAGCAGGTGGGCTAGCTGATCGAGTGAGTGGGGGCACT
GAAACCAAGACCCCTGCCCGAGCTTCATGTGTAAATGAAATACAGGATTA
GCCAAGCTATGTCGAGAGGTGTACTGCTCGCGTCTCTCGATTCCATTCGT
CCGAATGGCTGTGGGAAATGCTCGATCGAGATGAGCACACCACAAAAGCA
CAGCGTGGTGAGTGGTACCTCACAAAGGATATCAGTCTGTGACCAAAGAA
CGGGAGATGAACTCTGTCGGTGATGGGTCAGTCAGAATGCTCATGCATGG
GATTTGAACGTCAAAGACAGCGGTAGCGCCAAGCAGGACCAGAACCACAC
CACACCACGCGAGGTTCCTCTGAACCTTCGTTTCAAAAGCACCTTGAACG
AGACGACCTAATTCAATAATGAGCAGCTAATAAGCTCTGGCATCTGGCAC
AACCAATCCCACGCGTGAAAAAATAAACGGACAGGTGCGCGTCACCTGGC
ACTTCATCCTGGATGCGACCCCGGTGGTGGCGCGACCGATACACGTGGAC
GGCGTTAGCGTGTACAGCCTCAGCACCCAGGGTTTGGTGCGGCGGCACGA
CGTGGAAACGATCATCGTGAACGGGACTCCTGTCAAGCCGCCGTTCGCGC
AGGCTTGGATGCAGCTCCCGCCCTGGGTTACTCAAGGGCTGAAAGGGGGC
GCCGCGGGCGCCCCAGGGTTGACCAGCAGCAGCAGCAGCAGCAGCGGCGG
CGGCGGCGGCGGCGTAGGCAGCAGCTGTGGTAGCAGGAGAAATAGCAACA
ACGGCGGCAGAATGAGAATAAGAATACCGATGCCGGTGATGCCGAGCGGA
CCCGACGGCGCAACCTTGGCGGTTCAGGGCTTGGCGACGGTGGCGGGCAG
AAGAAGGTGGGGTGGTGAGTCGATGATTGCGGCGGCGACAGCGGGGAGGG
CGGGCTTAGCCGTAGATGTTAGCAGCAGCGGCAGCGGCGGCGGCGCGGGC
AGCATCTGGAGAGCTTCTTCTGAGGAGACAGGAAGGGGGCTGGAAGGAAA
GGACGGGCCCGAGGGAGGTGGGGAGGAAGCAGGGAGCAGCGGCAGCAGAG
ACGAGGAGAGCGGCACCACCGACTCGAGAGCACACGACAGGAAAGGGGCG
AAGAAGAAGAAGAAGAAGTTCTGGCCGATCGAGTACGATGGACCGCTCGG
CTGCGAGACGAGTTTTGACTGCACGGGGGGCTACGTCTGCTGCGATTTAC
TCGTCGTCAAGATCTGCTGCAGCAACGGCGTCATGCAGCGGAAACCGGGG
GATCTGATCCCTTCCTTGATACCGATTCCGGGAAGAGGGAGGAACGAAAA
TGATAACCCCCCGAAAAGGACGCCACGTGGGAACGCACGATGACAAAATG
AACTTTTCGTTGACACAACTAGACTCTAGCAGGCGTGAACGCTCGATCCG
GTATAGAGAAATGGGTCTTCGCTGATGTTCGATTTTGCTTGTGAGTACGT
GTGTGTACTACAGAGTTTGCCCCATAAGCTGCGCTCGGGTTACATGCTGG
TGGTTTTCCCGTGAATCCATCGTTGGATCAGCCTTACCAATGGTGATGGT
AACAGACCTGGTTTTCGTCGCCGCGTTTGTGGGTGGTATAAACCAGTTGG
ACACTCTCCTGGGTATGAAGTTTGTGCCGTATGTAGGCTTATAACCGTGT
TTTTTTTTATTGTCGGTGGCCGTTGCTTGCTCAAAAAGGTTTGATCTTTG
TTCGTCTCTCTGCTCTACACACATGGAGCCCGGATTGGGACACTGCTTCA
TAGAATTGCGTTAGTTTTGTTTTGCGCTTTAAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13600:1098..4580-

>mRNA_L-elsbetiae_contig13600.2747.1 ID=mRNA_L-elsbetiae_contig13600.2747.1|Name=mRNA_L-elsbetiae_contig13600.2747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2904bp|location=Sequence derived from alignment at L-elsbetiae_contig13600:1098..4580- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGATTGCTCATGGGTGGCTCTCGGCAAGCGCTTCTGCTGGCGTGCCC
GGTAGGAATGCTGATGCTGTGTTTCCGGACTGGAGATGGATTTTCAACCC
AGGCCTTGGTCAGCACTGGTGGGGCTGCAGCAACAGCATGCAGAGACGAG
GGAGGGCGAGCCTTGCGCTGCTTACCACGCGGTGCTGCGAGACAGGCATC
CGAGGGTGTGTTCCCCTCGGTGGCGAGGATGCCATTGCCTCCTGGTGGAG
AGATCTACGAAGGGGAGAAGAAGGAGAAAGAAAAGAGGGAGGACAGCGAC
TTCAACAGGCGGGTAGGGAAAGTCATCTCCACGTTGAGGCAAGACTACCC
GATCATGTTTGATGAGCCTCTGGACTTTGACATCTACACTCCTGATTTGC
AGCTGCGAGATCCGATGCGATTGCTCATGGGTGGCTCTCGGCAAGCGCTT
CTGCTGGCGTGCCCGGTAGGAATGCTGATGCTGTGTTTCCGGACTGGAGA
TGGATTTTCAACCCAGGCCTTGGTCAGCACTGGTGGGGCTGCAGCAACAG
CATGCAGAGACGAGGGAGGGCGAGCCTTGCGCTGCTTACCACGCGGTGCT
GCGAGACAGGCATCCGAGGGTGTGTTCCCCTCGGTGGCGAGGATGCCATT
GCCTCCTGGTGGAGAGATCTACGAAGGGGAGAAGAAGGAGAAAGAAAAGA
GGGAGGACAGCGACTTCAACAGGCGGGTAGGGAAAGTCATCTCCACGTTG
AGGCAAGACTACCCGATCATGTTTGATGAGCCTCTGGACTTTGACATCTA
CACTCCTGATTTGCAGCTGCGAGATCCGTCCGGCGTGGTTCTGACGGGGC
TGCCAGCGTACAAGAGGATGTTTGCGACGTTCCGCTTCGCGCGGAAGACC
GTTGTCCACGACCTTTCCACGGTGTTCCGCATCTCCTACGACGGGTCACG
GCAGCAGTCCGGCGTGGTTCTGACGGGGCTGCCAGCGTACAAGAGGATGT
TTGCGACGTTCCGCTTCGCGCGGAAGACCGTTGTCCACGACCTTTCCACG
GTGTTCCGCATCTCCTACGACGGGTCACGGCAGCAGGTGCGCGTCACCTG
GCACTTCATCCTGGATGCGACCCCGGTGGTGGCGCGACCGATACACGTGG
ACGGCGTTAGCGTGTACAGCCTCAGCACCCAGGGTTTGGTGCGGCGGCAC
GACGTGGAAACGATCATCGTGAACGGGACTCCTGTCAAGCCGCCGTTCGC
GCAGGCTTGGATGCAGCTCCCGCCCTGGGTTACTCAAGGGCTGAAAGGGG
GCGCCGCGGGCGCCCCAGGGTTGACCAGCAGCAGCAGCAGCAGCAGCGGC
GGCGGCGGCGGCGGCGTAGGCAGCAGCTGTGGTAGCAGGAGAAATAGCAA
CAACGGCGGCAGAATGAGAATAAGAATACCGATGCCGGTGATGCCGAGCG
GACCCGACGGCGCAACCTTGGCGGTTCAGGGCTTGGCGACGGTGGCGGGC
AGAAGAAGGTGGGGTGGTGAGTCGATGATTGCGGCGGCGACAGCGGGGAG
GGCGGGCTTAGCCGTAGATGTTAGCAGCAGCGGCAGCGGCGGCGGCGCGG
GCAGCATCTGGAGAGCTTCTTCTGAGGAGACAGGAAGGGGGCTGGAAGGA
AAGGACGGGCCCGAGGGAGGTGGGGAGGAAGCAGGGAGCAGCGGCAGCAG
AGACGAGGAGAGCGGCACCACCGACTCGAGAGCACACGACAGGAAAGGGG
CGAAGAAGAAGAAGAAGAAGTTCTGGCCGATCGAGTACGATGGACCGCTC
GGCTGCGAGACGAGTTTTGACTGCACGGGGGGCTACGTCTGCTGCGATTT
ACTCGTCGTCAAGATCTGCTGCAGCAACGGCGTCATGCAGCGGAAACCGG
GGGATCTGATCCCTTCCTTGATACCGATTCCGGGAAGAGGGAGGAACGAA
AATGATAACCCCCCGAAAAGGACGCCACGTGGGAACGCACGATGAGTGCG
CGTCACCTGGCACTTCATCCTGGATGCGACCCCGGTGGTGGCGCGACCGA
TACACGTGGACGGCGTTAGCGTGTACAGCCTCAGCACCCAGGGTTTGGTG
CGGCGGCACGACGTGGAAACGATCATCGTGAACGGGACTCCTGTCAAGCC
GCCGTTCGCGCAGGCTTGGATGCAGCTCCCGCCCTGGGTTACTCAAGGGC
TGAAAGGGGGCGCCGCGGGCGCCCCAGGGTTGACCAGCAGCAGCAGCAGC
AGCAGCGGCGGCGGCGGCGGCGGCGTAGGCAGCAGCTGTGGTAGCAGGAG
AAATAGCAACAACGGCGGCAGAATGAGAATAAGAATACCGATGCCGGTGA
TGCCGAGCGGACCCGACGGCGCAACCTTGGCGGTTCAGGGCTTGGCGACG
GTGGCGGGCAGAAGAAGGTGGGGTGGTGAGTCGATGATTGCGGCGGCGAC
AGCGGGGAGGGCGGGCTTAGCCGTAGATGTTAGCAGCAGCGGCAGCGGCG
GCGGCGCGGGCAGCATCTGGAGAGCTTCTTCTGAGGAGACAGGAAGGGGG
CTGGAAGGAAAGGACGGGCCCGAGGGAGGTGGGGAGGAAGCAGGGAGCAG
CGGCAGCAGAGACGAGGAGAGCGGCACCACCGACTCGAGAGCACACGACA
GGAAAGGGGCGAAGAAGAAGAAGAAGAAGTTCTGGCCGATCGAGTACGAT
GGACCGCTCGGCTGCGAGACGAGTTTTGACTGCACGGGGGGCTACGTCTG
CTGCGATTTACTCGTCGTCAAGATCTGCTGCAGCAACGGCGTCATGCAGC
GGAAACCGGGGGATCTGATCCCTTCCTTGATACCGATTCCGGGAAGAGGG
AGGAACGAAAATGATAACCCCCCGAAAAGGACGCCACGTGGGAACGCACG
ATGA
back to top