mRNA_L-elsbetiae_contig136.2739.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig136.2739.1
Unique NamemRNA_L-elsbetiae_contig136.2739.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig136.2739.1 vs. uniprot
Match: A4S0W7_OSTLU (Histone H3 n=6 Tax=Eukaryota TaxID=2759 RepID=A4S0W7_OSTLU)

HSP 1 Score: 249 bits (635), Expect = 8.650e-76
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 2 
Query:   41 MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 448
            MARTKQTARKSTGGKAPRKQLATKAARKSAPT GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTA+LALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of mRNA_L-elsbetiae_contig136.2739.1 vs. uniprot
Match: E1ZR66_CHLVA (Histone H3 n=10 Tax=Eukaryota TaxID=2759 RepID=E1ZR66_CHLVA)

HSP 1 Score: 248 bits (634), Expect = 1.210e-75
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 2 
Query:   41 MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 448
            MARTKQTARKSTGGKAPRKQLATKAARKSAPT GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+LALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of mRNA_L-elsbetiae_contig136.2739.1 vs. uniprot
Match: A0A7S3FY28_9SPIT (Histone H3 (Fragment) n=7 Tax=Eukaryota TaxID=2759 RepID=A0A7S3FY28_9SPIT)

HSP 1 Score: 248 bits (633), Expect = 1.760e-75
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 2 
Query:   41 MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 448
            MARTKQTARKSTGGKAPRKQLATKAARKSAPT GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+LALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA 136
[Close]
BLAST of mRNA_L-elsbetiae_contig136.2739.1 vs. uniprot
Match: A0A2J7QQS7_9NEOP (Histone H3 (Fragment) n=5 Tax=Bilateria TaxID=33213 RepID=A0A2J7QQS7_9NEOP)

HSP 1 Score: 248 bits (633), Expect = 1.950e-75
Identity = 131/137 (95.62%), Postives = 135/137 (98.54%), Query Frame = 2 
Query:   38 NMARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 448
            NMARTKQTARKSTGGKAPRKQLATKAARKSAP  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A++ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    4 NMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 140
[Close]
BLAST of mRNA_L-elsbetiae_contig136.2739.1 vs. uniprot
Match: C1BU06_LEPSM (Histone H3 n=6 Tax=Protostomia TaxID=33317 RepID=C1BU06_LEPSM)

HSP 1 Score: 248 bits (632), Expect = 2.390e-75
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 2 
Query:   41 MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 448
            MARTKQTARKSTGGKAPRKQLATKAARKSAPT GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A++ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of mRNA_L-elsbetiae_contig136.2739.1 vs. uniprot
Match: A0A164UA40_9CRUS (Histone H3 n=2 Tax=Eumetazoa TaxID=6072 RepID=A0A164UA40_9CRUS)

HSP 1 Score: 248 bits (633), Expect = 2.720e-75
Identity = 131/137 (95.62%), Postives = 135/137 (98.54%), Query Frame = 2 
Query:   38 NMARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 448
            NMARTKQTARKSTGGKAPRKQLATKAARKSAP  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A++ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   14 NMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 150
[Close]
BLAST of mRNA_L-elsbetiae_contig136.2739.1 vs. uniprot
Match: A0A6A4NAB8_LUPAL (Histone H3 n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6A4NAB8_LUPAL)

HSP 1 Score: 248 bits (632), Expect = 2.730e-75
Identity = 132/137 (96.35%), Postives = 135/137 (98.54%), Query Frame = 2 
Query:   38 NMARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 448
            +MARTKQTARKSTGGKAPRKQLATKAARKSAPT GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+LALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    4 SMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 140
[Close]
BLAST of mRNA_L-elsbetiae_contig136.2739.1 vs. uniprot
Match: H33_ARATH (Histone H3.3 n=266 Tax=cellular organisms TaxID=131567 RepID=H33_ARATH)

HSP 1 Score: 247 bits (631), Expect = 3.350e-75
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 2 
Query:   41 MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 448
            MARTKQTARKSTGGKAPRKQLATKAARKSAPT GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+LALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of mRNA_L-elsbetiae_contig136.2739.1 vs. uniprot
Match: B8CC53_THAPS (Histone H3 n=8 Tax=cellular organisms TaxID=131567 RepID=B8CC53_THAPS)

HSP 1 Score: 247 bits (631), Expect = 3.350e-75
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 2 
Query:   41 MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 448
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIR+YQKST+LLIRK PFQRLVREIAQDFKTDLRFQSTA+LALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRKYQKSTDLLIRKAPFQRLVREIAQDFKTDLRFQSTAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of mRNA_L-elsbetiae_contig136.2739.1 vs. uniprot
Match: A7RJG4_NEMVE (Predicted protein n=6 Tax=Eumetazoa TaxID=6072 RepID=A7RJG4_NEMVE)

HSP 1 Score: 247 bits (631), Expect = 3.350e-75
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 2 
Query:   41 MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 448
            MARTKQTARKSTGGKAPRKQLATKAARKSAP  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL+REIAQDFKTDLRFQS+A+LALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLIREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig136.2739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A4S0W7_OSTLU8.650e-7697.06Histone H3 n=6 Tax=Eukaryota TaxID=2759 RepID=A4S0... [more]
E1ZR66_CHLVA1.210e-7597.06Histone H3 n=10 Tax=Eukaryota TaxID=2759 RepID=E1Z... [more]
A0A7S3FY28_9SPIT1.760e-7596.32Histone H3 (Fragment) n=7 Tax=Eukaryota TaxID=2759... [more]
A0A2J7QQS7_9NEOP1.950e-7595.62Histone H3 (Fragment) n=5 Tax=Bilateria TaxID=3321... [more]
C1BU06_LEPSM2.390e-7596.32Histone H3 n=6 Tax=Protostomia TaxID=33317 RepID=C... [more]
A0A164UA40_9CRUS2.720e-7595.62Histone H3 n=2 Tax=Eumetazoa TaxID=6072 RepID=A0A1... [more]
A0A6A4NAB8_LUPAL2.730e-7596.35Histone H3 n=2 Tax=Mesangiospermae TaxID=1437183 R... [more]
H33_ARATH3.350e-7597.06Histone H3.3 n=266 Tax=cellular organisms TaxID=13... [more]
B8CC53_THAPS3.350e-7596.32Histone H3 n=8 Tax=cellular organisms TaxID=131567... [more]
A7RJG4_NEMVE3.350e-7596.32Predicted protein n=6 Tax=Eumetazoa TaxID=6072 Rep... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig136contigL-elsbetiae_contig136:35423..40376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score255.4
Seed ortholog evalue1.5e-65
Seed eggNOG ortholog2880.D8LFG7
Preferred nameH3.3
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Ec32 ortholog descriptionHistone H3
Ec32 orthologEc-04_002240.1
Exons4
Model size2110
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig136.2739.1prot_L-elsbetiae_contig136.2739.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig136 37082..40336 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.945202-UTR-L-elsbetiae_contig136:35422..370811622815526.945202-UTR-L-elsbetiae_contig136:35422..37081Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig136 35423..37081 -
1691682941.1144116-UTR-L-elsbetiae_contig136:35422..370811691682941.1144116-UTR-L-elsbetiae_contig136:35422..37081Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig136 35423..37081 -
1622815527.007263-UTR-L-elsbetiae_contig136:40336..403761622815527.007263-UTR-L-elsbetiae_contig136:40336..40376Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig136 40337..40376 -
1691682941.1561449-UTR-L-elsbetiae_contig136:40336..403761691682941.1561449-UTR-L-elsbetiae_contig136:40336..40376Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig136 40337..40376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.9577725-CDS-L-elsbetiae_contig136:37081..371891622815526.9577725-CDS-L-elsbetiae_contig136:37081..37189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 37082..37189 -
1691682941.1257334-CDS-L-elsbetiae_contig136:37081..371891691682941.1257334-CDS-L-elsbetiae_contig136:37081..37189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 37082..37189 -
1622815526.9676993-CDS-L-elsbetiae_contig136:37454..376351622815526.9676993-CDS-L-elsbetiae_contig136:37454..37635Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 37455..37635 -
1691682941.133662-CDS-L-elsbetiae_contig136:37454..376351691682941.133662-CDS-L-elsbetiae_contig136:37454..37635Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 37455..37635 -
1622815526.9779332-CDS-L-elsbetiae_contig136:38369..384731622815526.9779332-CDS-L-elsbetiae_contig136:38369..38473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 38370..38473 -
1691682941.1409082-CDS-L-elsbetiae_contig136:38369..384731691682941.1409082-CDS-L-elsbetiae_contig136:38369..38473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 38370..38473 -
1622815526.9928484-CDS-L-elsbetiae_contig136:40318..403361622815526.9928484-CDS-L-elsbetiae_contig136:40318..40336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 40319..40336 -
1691682941.1485777-CDS-L-elsbetiae_contig136:40318..403361691682941.1485777-CDS-L-elsbetiae_contig136:40318..40336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 40319..40336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig136.2739.1

>prot_L-elsbetiae_contig136.2739.1 ID=prot_L-elsbetiae_contig136.2739.1|Name=mRNA_L-elsbetiae_contig136.2739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPTAGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSTAILALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA*
back to top

mRNA from alignment at L-elsbetiae_contig136:35423..40376-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig136.2739.1 ID=mRNA_L-elsbetiae_contig136.2739.1|Name=mRNA_L-elsbetiae_contig136.2739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4954bp|location=Sequence derived from alignment at L-elsbetiae_contig136:35423..40376- (Laminarionema elsbetiae ELsaHSoW15)
CGCAGCCTTTCCCAACCGCTTAACGACCTCGACTTGAAACATGGCCCGCA
CGAAGCAGGTGAGAAAACGCGTGCGGGTTGCCGAAGTGGTTTCCCTTTCC
TTTTCCTTTTCCAGATGCTGAAAAAAAAAAACACGAGAGGAGCGAACAGA
GCGGGCGTTGACTTCGTGACTTGACGCCCCTAGCCAACGGCAGTCCTCAG
CTGCGAGGAGGCGTTGACTTCATTTTCGTGGCTCGTCACAATCGTCTTAT
CTGACGTAGTAGAGGTTTGTCGCAAGTCGTTGGCGTCGATTCATGGTGTG
GATTATTTTGTCGTTGGTGTGTACCGGGGTTCCTGTCCTCGTGTCTTTGT
ACCTACCGTTTACGAGTTCGTGTGGAAGGGACGTTCGGAGTTAGCCAGCG
CTTGAGCTGGCCGTTCCGGCGCCAACAGCCACATTTGCTACCCTTACGGC
CCTTGAGGGAGATGTGATGCAGATGGCACCCAAACTATTATTTTGTGTGT
TTTGTTTTAGAGGGTGTCCTGCGGTTGGGCACCACGCTGGTTTCACGGGA
CGGTTTGGCTGTTGTTTTTTTCGCCAACAAAAAAAAATATCCGTCAAATG
GTGATCTCTGTGTTTGTGTCAGAGTGTGTGCTCTTCATGCGCTCTTCAAC
ACGCGCAGATTCCCATTTAGATGCTCTTGCTTCCATCCGAGCTGATCTGC
TGTGTCTAGATCCTTCAATATGTTTCTCAATTGCTGAGTCCATGCGTGCA
TCTTCCGTTGTACTCAAAAGCGTTACCATACTATTTAGTTACAGCTTCCG
TGTTTTTTCACGGTTCGTTGGTGGTTGTCTCGCTCAGGGACACCACTCTT
CGCCGAAACGAGAGATAGTTCTTGGTTTTCAGCATATTTTCGACCGAAAC
TCAAAGAAAACAGACGAAATTTTGCTACTTCTTTACTTATTTTGTGCTTC
TCGGCGAAGACAGCTCAGAAACACTGAACATCAGTTACTTTTTTGTTGTC
TTCACACAAAAAAAAAGCGTTCCGATCTCTCTATCCAGTACACCTCCGTA
TGTCCGTACTACTCCAACACTTGACACGGTCGATTCCCGCGGCCATACGC
TAACTCACCCTCGAAGGGTATACTGATAAATAAAAAGTGGACCAGAAGGG
CCAACAAAGCTTAAAAACATAAGATAGACACAGATAGTCTGGAGCCCTCC
GCTCCCGTCTACACGCTAAATATGTATGTGAGATAAAAACAAAACTGGAA
AAACGGACGTCACCAACCGGGGGGGTACACCCCTGTTCTATCTTGGCACC
CAAAAATGCCGGGGTGTTCCGCGCGGGTTCTCACAGTCTTCCAAAAATCA
GAAAACACAAAAATACACACACACAAAAAATGTTTTCGTTCTTGGTGATG
CAGGTGTTGTATGTATGCAGATACACATGTAGTATATGTTTTGCTTCTCC
TCTCACTTTTGGCATATTCGTCGTCTGTCCCACTGGCCCCCTTCCTCCAC
CACGACTAGCTAGACGACCCAACCGGGGTGTACATACGTATGTATGTGCA
GAGTAGCAAGCGTGATACGCAAAAGACGAGGTGAAGCCCTCTCTCTGATT
CCCCCGTTCGCAATGTACAAGACGCGCTCTTCAGCAGGTTACCGTACTGC
GGTGTTGTCGGTGTCGGGACCCGAAACAATAAATAGTTTGATTGCGTGCC
ATGCAGCTCGCCTTTTTTGTCGTTCCGTCCAAGGCTTCTAGGCCGTGTGT
GTCCGTTTGTCAGGGCGTCCAAGGACCGCTGCATGTAAAAATCCATCGAT
ATTTGTACGAACCGCATTTCCCATTGTTTTCTAAACTGCTGTATTTTCAA
TTCCTGTCTGTTGTGTATTTTTGCGCCTCTCGTTCACTCCCTGTCGCGCT
CAGACTGCCCGTAAATCCACCGGAGGCAAGGCACCCCGCAAGCAGCTGGC
CACCAAGGCCGCCCGCAAGTCTGCGCCGACGGCCGGCGGTGTCAAGAAGC
CTCACCGGTGAGAACACGCACTTTTTGATATAATTTCGGCGCTTGTGCGC
TTTGTTGTGTGCCGTACATACAATAGTTACGGATTGTGGTTGCTCCGCCC
CCGCCCCATCTGGCCAGTCGGGAATGAGTTTCTGCCTTTAACACATACGT
CACTGACCGGTAGTATGCTGGCAATGTGTTTGTGTAGCTAATCGAGAACC
CATCGCAATAAACCATCGATGCGGAGAGTGCCGGCGCTTTGTCTGCCTTA
AGCTGACCCTCTGTACCACTCATCAAACAGTCGCGGCCGGTTACGGCCGA
CGATATTCCATTTCTCCCTGGGGGCATTAGTTCTTCAAGTACGTTTTGCT
TAGCCGCAGATATAGTTCTCCTCGCCGTTGGACCAGCTCTGGGCGTGAAA
GCATCTACATACCGGAAGAGGTTGTAGTTTTTAGTGTCGAAACAGCACCA
ACACGACACAAAATTGCCTGCTTGTCGGGCGAGTATGGTACAATATAGAA
ATGGGGAGCTGACTGCCCCTTGACGCAGCTTGCGTCACGGTTGGCGCCAT
CGACCCCAATATTCATGACGACGACATGTGTGTGACTCCAAACATATTTT
TGAAGACGACCCCTTTCTTTCGGCGATTTTAACCCTCCCAACCCCCAACC
CTCTTTCGCTACGATTGCACAATACTCCTCGTGGCTATCGTTCCGTTTCG
TTCGAAAACCTATCGATTTGGGTCGGTCGAAAAAACAACAGGTACAGGCC
CGGTACCGTGGCCCTGCGCGAGATCCGCCGCTACCAGAAATCTACCGAGC
TGCTGATCCGCAAGCTGCCCTTCCAGCGCCTGGTCCGCGAAATCGCCCAG
GACTTCAAGACCGACCTTCGCTTCCAGAGCACGGCCATCCTCGCCCTGCA
GGAGGCCGCCGAGGCATACCTGGTGAGCCGTAGCGTAGTATATCGCAGGT
ATCGTGTCTTTATAATTCGCTCCTTGCCCTCGAAACAGCAGCATTGCATG
AAGTCTATGTATCACCCATTCCCTCTCCCTTAGAAAGTGGCTGCCATGTA
AGCTTGCACTCGCCGTGGTTTGAAAGTTTGAAACGCATGTTGAGAGAAGT
CCGAATGTCGTGATCATGTGATCCTCATGTGATTCTCACCCAAAATTTGT
TGGCCATGTGCACCCTCTCCTCTTGAAATATTTTTAGGTGGGCCTGTTCG
AAGACACCAACCTGTGCGCCATCCACGCCAAGCGCGTGACCATCATGCCG
AAGGACATCCAGCTGGCTCGCCGTATCCGCGGCGAGAGGGCATAAGCGCC
GCCGGCGCGAGTCCCACTTCCATGTTTGTTGTTTTGTGAAAAAAAAAACT
ACTGCTACTGCTGTATGTTGTATCGTAGCAGAAAGCAAGCAGCGCCGGGC
CTGTATCTTCTTTTTGATTCTCTCGCCGAAATGTTTTGATTTTTTTTGTA
TATGTTACGTACGGTGGGCACCGCCGTAGATCGGAGATGGCGATGAGGCT
GATGCTCGTGGTGCGGTAATTTCTGACTGCGTCGCAGTACACAACTCCTG
TCGTTTGAAGACGGTAAGCTACCGTTGCTCCGCGTGAGCAAGCTTAAAGG
TGTAGAGCATGCCTTCGGACGGTAGAGAGCGTGAGTTGTAAAGGTAGCAA
GGTGGCACCATCTGTTGCCCCATGTATCCTCGAGTTGTCAGCACTAGAGT
ATTTTTGGCGTATCTGCACGAGTCGACTGCCCAATTCCGCCAGCATTTGC
TTTTGGGATGGCGGGAGATATACAACAGCGGTTATCCCTCGCACCGATGG
CTCGCGAGTGATGCGCTTCAATCGACGCGAGCGTTGATATTGATGGGCAG
GATTGATTGAATTGATAGAGCTGCTTAGTTGACGATAATGAAATGCTTTG
TTGATTTTTGCCCGTCCCTGTCACATACTTTAATTTTATGTGTACTATCA
ATCGAGCTATGAAGATCTTTAGGAAAATATTTTTTTGTTCCTCGGGCGTG
CTTTCTGTGCAGGTAGGTTAACTACCTACGCAGCAGCTCGATCTAAGAGC
GAGTGATACGCCGGGTGTAGCTTAATCACTCTTGCTCGCACGCTCTCTGA
AACAAGCCCTGACCTGTTACGCGACGAGAAGAGAAAACGAAAGGCCGGTG
TGCTATCAACGCGAGACGTTTTGTGCTGGCTTCCTTGGTGTTTCGCAGGC
GCGTGTGCATGCATGGGCAAGGAGCAGGGTTGACCATCTTTGAGCCACGC
GCTGGCGCGGTTTGATTGTGTGTTAACACGATTGGGTGTATTCTGCAGTT
CCGAGTTTCATAAACCCCGGTACTGCACCTATCGGCCACATTGCGTGAGT
AAATTCACCAGTTGTAAAAAAACGGGGCTTCAATTGTTCAACCTCACATC
CGCGGGTGTTTCCCTCCTTAAAGTTGCTGTTGGCAGCTCACGTTAATGTG
TATTTAGCAGCGGGGGCGTTCTCTCTTCGAAAAAGTATCCACGGGGCCAC
CAACTATCAAATTCAGTGGAAGAAATGCCCCGGGGTAGGTGGAGTTCAAC
GATCCGAGACGATCAGTTGGCTGAGCACTAGATATCTAAAAGATACATAT
AGTAACGAAGCTTTATCGAAAACAGCGCACGTTGCGTTTAAATACGGGAG
AATCGTACATATAATCGGCTTCGATTTCCGTATCGTACCTGCCTACAAAC
CGTTGACGAGGGAAAGGGACGGCGGAACCCTTCTCGCGATCAAAATCAAG
GCAAGCACAGCGAGAGAAGGTGGGGCACTAAAAAACAAATATTGAGACAA
GAGAAAGCCCAGTGTTCACCTCCTCTTGTGTGACCCCGGCTGCTCCGTCT
AGTTGCACAGAGAACATACACCAAAATGTGTTGTGCAATATACCGAAACT
CGTAGCACCCCGAACAAGGCGGACAGACGCCAGAATATGTGGGATGAAAC
ACAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig136:35423..40376-

>mRNA_L-elsbetiae_contig136.2739.1 ID=mRNA_L-elsbetiae_contig136.2739.1|Name=mRNA_L-elsbetiae_contig136.2739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig136:35423..40376- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCCGCACGAAGCAGATGGCCCGCACGAAGCAGACTGCCCGTAAATC
CACCGGAGGCAAGGCACCCCGCAAGCAGCTGGCCACCAAGGCCGCCCGCA
AGTCTGCGCCGACGGCCGGCGGTGTCAAGAAGCCTCACCGACTGCCCGTA
AATCCACCGGAGGCAAGGCACCCCGCAAGCAGCTGGCCACCAAGGCCGCC
CGCAAGTCTGCGCCGACGGCCGGCGGTGTCAAGAAGCCTCACCGGTACAG
GCCCGGTACCGTGGCCCTGCGCGAGATCCGCCGCTACCAGAAATCTACCG
AGCTGCTGATCCGCAAGCTGCCCTTCCAGCGCCTGGTCCGCGAAATCGCC
CAGGACTTCAAGACCGACCTTCGCTTCCAGAGCACGGCCATCCTCGCCCT
GCAGGAGGCCGCCGAGGCATACCTGGTACAGGCCCGGTACCGTGGCCCTG
CGCGAGATCCGCCGCTACCAGAAATCTACCGAGCTGCTGATCCGCAAGCT
GCCCTTCCAGCGCCTGGTCCGCGAAATCGCCCAGGACTTCAAGACCGACC
TTCGCTTCCAGAGCACGGCCATCCTCGCCCTGCAGGAGGCCGCCGAGGCA
TACCTGGTGGGCCTGTTCGAAGACACCAACCTGTGCGCCATCCACGCCAA
GCGCGTGACCATCATGCCGAAGGACATCCAGCTGGCTCGCCGTATCCGCG
GCGAGAGGGCATAAGTGGGCCTGTTCGAAGACACCAACCTGTGCGCCATC
CACGCCAAGCGCGTGACCATCATGCCGAAGGACATCCAGCTGGCTCGCCG
TATCCGCGGCGAGAGGGCATAA
back to top