mRNA_L-elsbetiae_contig10222.271.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10222.271.1
Unique NamemRNA_L-elsbetiae_contig10222.271.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10222.271.1 vs. uniprot
Match: D7G019_ECTSI (Similar to importin 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G019_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 8.100e-19
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 3 
Query:   15 YVEGVHSFFPRNL*MPDTDLDNVKQAMLILEGHVVVGGMVVLQAHGPLVCACVCRVVG 188
            Y EG+H+ FPR   M DTDLDN+KQ+MLILE HVV+GG V LQAHGPLVC C CRVVG
Sbjct:  818 YSEGLHNLFPRIPEMLDTDLDNLKQSMLILEAHVVIGGTVFLQAHGPLVCTCFCRVVG 875
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10222.271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G019_ECTSI8.100e-1972.41Similar to importin 11 n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10222contigL-elsbetiae_contig10222:5631..6733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size273
Cds size195
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10222.271.1prot_L-elsbetiae_contig10222.271.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10222 5709..6733 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815252.9423542-UTR-L-elsbetiae_contig10222:5630..57081622815252.9423542-UTR-L-elsbetiae_contig10222:5630..5708Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10222 5631..5708 +
1691682797.5633419-UTR-L-elsbetiae_contig10222:5630..57081691682797.5633419-UTR-L-elsbetiae_contig10222:5630..5708Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10222 5631..5708 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815252.9530373-CDS-L-elsbetiae_contig10222:5708..57191622815252.9530373-CDS-L-elsbetiae_contig10222:5708..5719Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10222 5709..5719 +
1691682797.5720484-CDS-L-elsbetiae_contig10222:5708..57191691682797.5720484-CDS-L-elsbetiae_contig10222:5708..5719Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10222 5709..5719 +
1622815252.965214-CDS-L-elsbetiae_contig10222:5977..60751622815252.965214-CDS-L-elsbetiae_contig10222:5977..6075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10222 5978..6075 +
1691682797.5809078-CDS-L-elsbetiae_contig10222:5977..60751691682797.5809078-CDS-L-elsbetiae_contig10222:5977..6075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10222 5978..6075 +
1622815252.9815116-CDS-L-elsbetiae_contig10222:6647..67331622815252.9815116-CDS-L-elsbetiae_contig10222:6647..6733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10222 6648..6733 +
1691682797.591684-CDS-L-elsbetiae_contig10222:6647..67331691682797.591684-CDS-L-elsbetiae_contig10222:6647..6733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10222 6648..6733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10222.271.1

>prot_L-elsbetiae_contig10222.271.1 ID=prot_L-elsbetiae_contig10222.271.1|Name=mRNA_L-elsbetiae_contig10222.271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=65bp
MSSRPCSSWRGMLLSAAWLFCKRTVPWFAPASAGLLGSCAAPPRFNVAFC
STWRRRIHRLLRWAT
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mRNA from alignment at L-elsbetiae_contig10222:5631..6733+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10222.271.1 ID=mRNA_L-elsbetiae_contig10222.271.1|Name=mRNA_L-elsbetiae_contig10222.271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1103bp|location=Sequence derived from alignment at L-elsbetiae_contig10222:5631..6733+ (Laminarionema elsbetiae ELsaHSoW15)
CCTTAATGGACTTCTACGTGGAAGGGGTACATAGCTTCTTTCCGCGGAAC
CTCTAAATGCCCGACACGGACCTCGACAATGTCAAGCAGGTGGGGTGCAG
GCAGACGGCGAGGCGTAAGGGCGAACCAATGCATCGACCGTTGGAACAGT
TGTTTTTTTTTCTTAGCCTGATTCTTCTCTTTCAACTTCCGCTAAGTTGG
TTTGGCAGCTGCTGATGTGGCGTACATCACTGAGCCGACCATTCCTATCA
CTTGGGTTCGAATGGTGTGATGCCGTCCGTCTCTCCTTGTTAGTTAATTT
GCGTCACTTTATCTCGATCTCCGCTCCGACCCTGCAATTGTGGCCAGGCC
ATGCTCATCTTGGAGGGGCATGTTGTTGTCGGCGGCATGGTTGTTCTGCA
AGCGCACGGTCCCCTGGTTTGCGCCTGCGTCTGCAGGGTTGTTGGGTAGG
TGGGCCTGAATGCTGGTGTTTTGCCGTGCTTCTGCTGGTTATCTGAATGC
TTTGTGTGACAAATATTTGAGCTTGCAAACACCTCTGTCATCTTTAACCT
GAGATACCGCTGCTGGTCAGAGGAAGGTCGTAAGTGGTAGTATGTACTGC
TACCAAGCCTCGGTCAGCCCTTTAACCATTGGCTTTCGTTTTTCGTCGTG
TCTGTCGCTATTTCGGCTTTGTACTCTGGGCTATTACCTTCTCTTGCCTT
ATGTTTTTATGCGCTATCCACGACGGCTGGTAGCATGGAAAGCCTAGACT
AGGACACCAGATAACATTGGATCGAGTGAAGCGGTTGCATGTCGTCGACA
TGCACCACAAGTAGATGTGTTTCCCGGCAGACATCTCTAGCAGTGGTACA
GCGCGGGGCCCCTTTCAAGAATCCGTACGTTTTCCTCTCCGAAAATCGAC
GTTGATGCCCCTGCTTCCCCTGCTTGATTTCCTCCATTCCATATTGTCCA
TGCCGACGTCGGTATCGATGCTCCGCTCCCTTTTCATTTCCTGTTGGGGT
ACTCTTCGTCGGAACAGGGTCCTGTGCGGCGCCCCCGAGGTTTAACGTGG
CGTTTTGCAGCACCTGGCGGAGGCGTATCCACCGACTCCTGCGATGGGCG
ACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10222:5631..6733+

>mRNA_L-elsbetiae_contig10222.271.1 ID=mRNA_L-elsbetiae_contig10222.271.1|Name=mRNA_L-elsbetiae_contig10222.271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig10222:5631..6733+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAAGCAGATGTCAAGCAGGCCATGCTCATCTTGGAGGGGCATGTTG
TTGTCGGCGGCATGGTTGTTCTGCAAGCGCACGGTCCCCTGGTTTGCGCC
TGCGTCTGCAGGGTTGTTGGGCCATGCTCATCTTGGAGGGGCATGTTGTT
GTCGGCGGCATGGTTGTTCTGCAAGCGCACGGTCCCCTGGTTTGCGCCTG
CGTCTGCAGGGTTGTTGGGGTCCTGTGCGGCGCCCCCGAGGTTTAACGTG
GCGTTTTGCAGCACCTGGCGGAGGCGTATCCACCGACTCCTGCGATGGGC
GACAGGTCCTGTGCGGCGCCCCCGAGGTTTAACGTGGCGTTTTGCAGCAC
CTGGCGGAGGCGTATCCACCGACTCCTGCGATGGGCGACA
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