mRNA_L-elsbetiae_contig13522.2697.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13522.2697.1
Unique NamemRNA_L-elsbetiae_contig13522.2697.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13522.2697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13522contigL-elsbetiae_contig13522:2550..3526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size266
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13522.2697.1prot_L-elsbetiae_contig13522.2697.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13522 2559..3512 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815521.5382402-UTR-L-elsbetiae_contig13522:2549..25581622815521.5382402-UTR-L-elsbetiae_contig13522:2549..2558Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13522 2550..2558 -
1691682938.682109-UTR-L-elsbetiae_contig13522:2549..25581691682938.682109-UTR-L-elsbetiae_contig13522:2549..2558Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13522 2550..2558 -
1622815521.5707033-UTR-L-elsbetiae_contig13522:3512..35261622815521.5707033-UTR-L-elsbetiae_contig13522:3512..3526Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13522 3513..3526 -
1691682938.7154562-UTR-L-elsbetiae_contig13522:3512..35261691682938.7154562-UTR-L-elsbetiae_contig13522:3512..3526Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13522 3513..3526 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815521.548792-CDS-L-elsbetiae_contig13522:2558..27071622815521.548792-CDS-L-elsbetiae_contig13522:2558..2707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13522 2559..2707 -
1691682938.692469-CDS-L-elsbetiae_contig13522:2558..27071691682938.692469-CDS-L-elsbetiae_contig13522:2558..2707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13522 2559..2707 -
1622815521.5608213-CDS-L-elsbetiae_contig13522:3418..35121622815521.5608213-CDS-L-elsbetiae_contig13522:3418..3512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13522 3419..3512 -
1691682938.704073-CDS-L-elsbetiae_contig13522:3418..35121691682938.704073-CDS-L-elsbetiae_contig13522:3418..3512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13522 3419..3512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13522.2697.1

>prot_L-elsbetiae_contig13522.2697.1 ID=prot_L-elsbetiae_contig13522.2697.1|Name=mRNA_L-elsbetiae_contig13522.2697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
MRGAAAQSLNLILASALEWRSESKLEALRAQGSAAGGTSNSVECDYIGCR
NHDRRFSHARADCRVERDHKDQGLVLKKDG*
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mRNA from alignment at L-elsbetiae_contig13522:2550..3526-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13522.2697.1 ID=mRNA_L-elsbetiae_contig13522.2697.1|Name=mRNA_L-elsbetiae_contig13522.2697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=977bp|location=Sequence derived from alignment at L-elsbetiae_contig13522:2550..3526- (Laminarionema elsbetiae ELsaHSoW15)
ACCTAGGCCTGTTCATGCGCGGCGCAGCTGCCCAAAGCCTCAACCTCATC
CTAGCGTCCGCGTTAGAGTGGCGGTCTGAGTCCAAGCTAGAAGCACTACG
CGCGCAAGGCGTCCGTATTGAGGTCACACCCCCTACATCGTGGGAGGAGT
GGGTGAACGCGTTCACAAATCTGTTTGCACCGGCTAACAGAATTTCACTC
CTCGCGCGTGAAGTCATGACACTACAAGCGAAAACGAGTGAGTCTGTAGA
CGTGTTTTCTCTCAGAGTGACGCAAGCCTACTCGCGCTTCCTCGAAGAGG
CGAAGCGCACCGCACCCGCTAACGTCTCCCCGCACGAGCACGCGTTCGAA
CAAGCTAAAATTGCTTCGTTCGAAAACGGGCTGCCACCAGACGTGAGGCT
TGAACTAATCAGAGAAGATGCATCGATTTCCTTCACAGTGTCAAAAGCGC
GAGCACGCAAACACGAAGCGAATAAATTACGATCCGCATCATCTCAAGGT
TCAACCGCTACGGTCTCGGCCTTATCTAACCCGCCCCAACCGCAGATCCA
AGTGCACCAGTACGAGATGCTTGACCGCGTATCCGCGCTCGAGCAATACC
TCGCTAGCGACAACGGCTTCAAAGCCAATGCGGTTGCCTACAAAAACCCT
GGCAACCGTGCGCGCGCGCCACAGGCGAAAGGCAACAAACGCCAACAGCC
GTCTGGTCACGTACACACCTCTTCGAACAAGAAGTCGGTGGGATCTCAGG
GCACCAGGAACACTGGCAACGCCCGCGGTGGTGGCGGCAGCGGCAACGGC
GGCGGCGGCGGAGGCGGAGGTAGTGCCGCTGGCGGAACTAGCAACTCCGT
CGAGTGTGACTATATTGGTTGCCGCAACCACGACAGGCGGTTCTCGCATG
CGAGGGCCGACTGCCGGGTTGAGAGGGACCACAAGGACCAGGGCCTAGTG
TTGAAGAAGGACGGCTAGGGTTGCCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13522:2550..3526-

>mRNA_L-elsbetiae_contig13522.2697.1 ID=mRNA_L-elsbetiae_contig13522.2697.1|Name=mRNA_L-elsbetiae_contig13522.2697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig13522:2550..3526- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCGGCGCAGCTGCCCAAAGCCTCAACCTCATCCTAGCGTCCGCGTT
AGAGTGGCGGTCTGAGTCCAAGCTAGAAGCACTACGCGCGCAAGATGCGC
GGCGCAGCTGCCCAAAGCCTCAACCTCATCCTAGCGTCCGCGTTAGAGTG
GCGGTCTGAGTCCAAGCTAGAAGCACTACGCGCGCAAGGTAGTGCCGCTG
GCGGAACTAGCAACTCCGTCGAGTGTGACTATATTGGTTGCCGCAACCAC
GACAGGCGGTTCTCGCATGCGAGGGCCGACTGCCGGGTTGAGAGGGACCA
CAAGGACCAGGGCCTAGTGTTGAAGAAGGACGGCTAGGTAGTGCCGCTGG
CGGAACTAGCAACTCCGTCGAGTGTGACTATATTGGTTGCCGCAACCACG
ACAGGCGGTTCTCGCATGCGAGGGCCGACTGCCGGGTTGAGAGGGACCAC
AAGGACCAGGGCCTAGTGTTGAAGAAGGACGGCTAG
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