mRNA_L-elsbetiae_contig13412.2633.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13412.2633.1
Unique NamemRNA_L-elsbetiae_contig13412.2633.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13412.2633.1 vs. uniprot
Match: D8LCQ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ5_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 1.900e-73
Identity = 105/118 (88.98%), Postives = 109/118 (92.37%), Query Frame = 1
Query:    1 GCLPDLAHDGVGVEDAESRWSCAEEIVPDGGQCEITFSFDSPQDVTDVQVAFWKGDERTRTLK--LNGDKVGEYESYPGSTFNSFGIQENGVHTVTMESVGIDKDDWISLLEVLFYVQ 348
            GCLPDLAHDGVG ED ESRWSCAEEIVPDGGQCEITF+FDSPQD+TDVQVAFWKGDERTRTLK  +NGDK+GEYESYPGSTFNSFGIQENGVHTV MESVGID DDWISLLEV F V 
Sbjct:    2 GCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGSTFNSFGIQENGVHTVAMESVGIDADDWISLLEVRFMVD 119          
BLAST of mRNA_L-elsbetiae_contig13412.2633.1 vs. uniprot
Match: A0A6H5J8U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8U9_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 2.890e-70
Identity = 105/118 (88.98%), Postives = 111/118 (94.07%), Query Frame = 1
Query:    1 GCLPDLAHDGVGVEDAESRWSCAEEIVPDGGQCEITFSFDSPQDVTDVQVAFWKGDERTRTLK--LNGDKVGEYESYPGSTFNSFGIQENGVHTVTMESVGIDKDDWISLLEVLFYVQ 348
            GCLPDLAHDGVG ED ESRWSCAEEIVPDGGQCEI+F+FDSPQD+TDVQVAFWKGDERTRTLK  +NGDK+GEYESYPGSTFNSFGIQENGVHTVTMESVGID+DDWISLLEV F V 
Sbjct:  284 GCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEISFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGSTFNSFGIQENGVHTVTMESVGIDRDDWISLLEVRFMVD 401          
BLAST of mRNA_L-elsbetiae_contig13412.2633.1 vs. uniprot
Match: A0A6H5JFX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX1_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 1.590e-44
Identity = 73/118 (61.86%), Postives = 94/118 (79.66%), Query Frame = 1
Query:    1 GCLPDLAHDGVGVEDAESRWSCAEEIVPDGGQCEITFSFDSPQDVTDVQVAFWKGDERTRTLK--LNGDKVGEYESYPGSTFNSFGIQENGVHTVTMESVGIDKDDWISLLEVLFYVQ 348
            GCLP LA DG+  +D ESRWSCAE+IVPDGGQCEI F+F  PQ++  +QV FWKG+ERTRTLK  +NG+K GE++S+PGS  + F +    VHTVT+ES+G+D D+WISLLEV+F V+
Sbjct:  224 GCLPVLATDGI-TDDVESRWSCAEDIVPDGGQCEIEFTFSHPQNLKQLQVDFWKGEERTRTLKVKINGEKFGEFDSHPGSVTSYFDVIAYDVHTVTLESLGLDTDEWISLLEVIFMVE 340          
BLAST of mRNA_L-elsbetiae_contig13412.2633.1 vs. uniprot
Match: D7G3F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F6_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.000e-35
Identity = 62/118 (52.54%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    1 GCLPDLAHDGVGVEDAESRWSCAEEIVPDGGQCEITFSFDSPQDVTDVQVAFWKGDERTRTLKL--NGDKVGEYESYPGSTFNSFGIQENGVHTVTMESVGIDKDDWISLLEVLFYVQ 348
            GC P    DG+  E AESRWSCA +IVP GG C+I + F  PQD+ D+QVAFWKGDER RTL++  +G     +ESY GSTFN  G+   G+ +V +ESV + +++WISL+EVL +V 
Sbjct:  108 GCTPANTRDGISNE-AESRWSCASKIVPGGGPCQIEYVFGEPQDIEDIQVAFWKGDERVRTLEVYFDGTLYRTHESYAGSTFNPLGVSATGISSVMLESVDLLENEWISLIEVLIFVS 224          
BLAST of mRNA_L-elsbetiae_contig13412.2633.1 vs. uniprot
Match: D7FI81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI81_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 2.120e-34
Identity = 61/119 (51.26%), Postives = 83/119 (69.75%), Query Frame = 1
Query:    1 GCLPDLAHDGVGVEDAESRWSCAEEIVPDGGQCEITFSFDSPQDVTDVQVAFWKGDERTRTLKL--NGDKVGEYESYPGSTFNSFGIQENGVHTVTMESVGIDKDDWISLLEVLFYVQI 351
            GC    AHDG+ + + ESRWSCA  +VPD G C+I FSF  PQD+ D+QVAFW+G+ERTRT+ +  +G+    +ESY  STFN+ G+      TV +ESV +  D+WISLLEVL +V++
Sbjct:  192 GCAAIKAHDGI-ISEIESRWSCATMLVPDEGPCQIEFSFADPQDIVDIQVAFWEGNERTRTVDIFIDGELTHTHESYADSTFNTLGVTATEASTVMLESVDLLSDEWISLLEVLIFVKV 309          
BLAST of mRNA_L-elsbetiae_contig13412.2633.1 vs. uniprot
Match: D7FI77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI77_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 3.580e-33
Identity = 58/117 (49.57%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    1 GCLPDLAHDGVGVEDAESRWSCAEEIVPDGGQCEITFSFDSPQDVTDVQVAFWKGDERTRTL--KLNGDKVGEYESYPGSTFNSFGIQENGVHTVTMESVGIDKDDWISLLEVLFYV 345
            GC      DG+   + ESRWSCA ++VPD G C+I F+F  PQ + D+QVAFWKG++RTRTL   +NG+    +ESY  STFN+ G+  N   TV +ES  +  D+WISL+EVL +V
Sbjct:   56 GCTATNTRDGI-FSEIESRWSCATKLVPDEGPCQIEFTFAEPQHIVDIQVAFWKGNDRTRTLGVHVNGELTHTHESYTDSTFNTLGVTANEASTVMLESTALLSDEWISLIEVLIFV 171          
BLAST of mRNA_L-elsbetiae_contig13412.2633.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.700e-32
Identity = 59/117 (50.43%), Postives = 82/117 (70.09%), Query Frame = 1
Query:    1 GCLPDLAHDGVGVEDAESRWSCAEEIVPDGGQCEITFSFDSPQDVTDVQVAFWKGDERTRTLKL--NGDKVGEYESYPGSTFNSFGIQENGVHTVTMESVGIDKDDWISLLEVLFYV 345
            GC  + A DG+  E  ESRWSCA +++ D G C+I FSF  PQ++ D+QVAFWKG+ER RTL++  NG+    +ESY  STFN+ G+  N  +TV +ESV +  ++WISL+EVL +V
Sbjct:  189 GCAANNARDGISTE-IESRWSCAAKLLDDEGPCQIEFSFAEPQNIVDIQVAFWKGNERVRTLEVYVNGELTHTHESYADSTFNTLGVTANEANTVMLESVSLLSNEWISLIEVLIFV 304          
BLAST of mRNA_L-elsbetiae_contig13412.2633.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 3.690e-32
Identity = 64/117 (54.70%), Postives = 79/117 (67.52%), Query Frame = 1
Query:    1 GCLPDLAHDGVGVEDAESRWSCAEEIVPDGGQCEITFSFDSPQDVTDVQVAFWKGDERTRTL--KLNGDKVGEYESYPGSTFNSFGIQENGVHTVTMESVGIDKDDWISLLEVLFYV 345
            GC      DG+ V D ESRWSCA  +VPD G C+I FSF  PQ+V D+QVAFWKG+ERTRTL   +NG+    +ESY  STFN+ G+      TV +ESV +  D+WISLLEVL +V
Sbjct:  494 GCTATNTRDGI-VSDIESRWSCATILVPDEGACQIEFSFAEPQNVVDIQVAFWKGNERTRTLWVHVNGELTHTHESYADSTFNTLGVTATEASTVMLESVALLSDEWISLLEVLIFV 609          
BLAST of mRNA_L-elsbetiae_contig13412.2633.1 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 3.910e-32
Identity = 58/117 (49.57%), Postives = 79/117 (67.52%), Query Frame = 1
Query:    1 GCLPDLAHDGVGVEDAESRWSCAEEIVPDGGQCEITFSFDSPQDVTDVQVAFWKGDERTRTLK--LNGDKVGEYESYPGSTFNSFGIQENGVHTVTMESVGIDKDDWISLLEVLFYV 345
            GC      DG+   + ESRWSCA ++V D G C+I F+F  PQ + D+QVAFWKG+ERTRTL+  +NG+    +ESY  +TFN+ G+    V TV +ESV +  D+WISL+EVL +V
Sbjct:  120 GCTAANTRDGI-FSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEVLIFV 235          
BLAST of mRNA_L-elsbetiae_contig13412.2633.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 2.450e-30
Identity = 59/114 (51.75%), Postives = 79/114 (69.30%), Query Frame = 1
Query:    1 GCLPDLAHDGVGVEDAESRWSCAEEIVPDGGQCEITFSFDSPQDVTDVQVAFWKGDERTRTLKL--NGDKVGEYESYPGSTFNSFGIQENGVHTVTMESVGIDKDDWISLLEVL 336
            GC P    DG+  E  ESRWSCA +IVP GG C+I + F  PQD+ D++VAFW GDER RTL++  +G     +ESY GSTFNS G+   G+ TV +ESV + +++WISL+EV+
Sbjct:  514 GCSPANTRDGISNE-TESRWSCASKIVPGGGPCQIEYVFGEPQDIEDIKVAFWMGDERVRTLEVYFDGTLHRTHESYAGSTFNSLGVSATGIGTVMLESVDLLENEWISLIEVV 626          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13412.2633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D8LCQ5_ECTSI1.900e-7388.98Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5J8U9_9PHAE2.890e-7088.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFX1_9PHAE1.590e-4461.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G3F6_ECTSI1.000e-3552.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI81_ECTSI2.120e-3451.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI77_ECTSI3.580e-3349.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S3_ECTSI1.700e-3250.43LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FI87_ECTSI3.690e-3254.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5F4_ECTSI3.910e-3249.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTT4_9PHAE2.450e-3051.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13412contigL-elsbetiae_contig13412:896..2876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue3.3e-08
Seed eggNOG ortholog2880.D7FL48
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_001980.1
Exons2
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815513.180955-CDS-L-elsbetiae_contig13412:895..10841622815513.180955-CDS-L-elsbetiae_contig13412:895..1084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13412 896..1084 +
1691682935.3042934-CDS-L-elsbetiae_contig13412:895..10841691682935.3042934-CDS-L-elsbetiae_contig13412:895..1084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13412 896..1084 +
1622815513.1925876-CDS-L-elsbetiae_contig13412:2711..28761622815513.1925876-CDS-L-elsbetiae_contig13412:2711..2876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13412 2712..2876 +
1691682935.3205187-CDS-L-elsbetiae_contig13412:2711..28761691682935.3205187-CDS-L-elsbetiae_contig13412:2711..2876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13412 2712..2876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13412.2633.1prot_L-elsbetiae_contig13412.2633.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13412 896..2876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13412.2633.1

>prot_L-elsbetiae_contig13412.2633.1 ID=prot_L-elsbetiae_contig13412.2633.1|Name=mRNA_L-elsbetiae_contig13412.2633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
GCLPDLAHDGVGVEDAESRWSCAEEIVPDGGQCEITFSFDSPQDVTDVQV
AFWKGDERTRTLKLNGDKVGEYESYPGSTFNSFGIQENGVHTVTMESVGI
DKDDWISLLEVLFYVQI*
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mRNA from alignment at L-elsbetiae_contig13412:896..2876+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13412.2633.1 ID=mRNA_L-elsbetiae_contig13412.2633.1|Name=mRNA_L-elsbetiae_contig13412.2633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1981bp|location=Sequence derived from alignment at L-elsbetiae_contig13412:896..2876+ (Laminarionema elsbetiae ELsaHSoW15)
GGTTGCCTGCCCGATCTTGCCCACGACGGCGTCGGCGTGGAAGACGCGGA GTCAAGGTGGTCGTGCGCCGAGGAAATCGTGCCCGACGGAGGCCAGTGCG AGATTACCTTTTCGTTCGACAGCCCCCAAGACGTCACCGATGTGCAGGTT GCCTTCTGGAAGGGAGACGAGCGCACTCGTACCCTCAAGGTGAAGTATTA AAAACGATGGCCCCATGGTAAAAATAAAGGGCAACGGCCAAAACAAGGTA CACCTTATACTTTTCCGGCCAAAACAAGGTATTGTATGTGGTACCGAACA TCAACGTTCCTCGTACCTACTAAAGCCCTCGGATAGAATCTCGGAGGCTG TCCCATGGCCGTCATCAAAGTAGGGCACAACCCGTGCCCAGCGTCAATGG ATGTCTACATACTATCTACATGCACATGCTCGAGGGTGAGGTAGACGCTC CGCCGTGCAACTACGCACGGCTGCAATGACCCTCGTTTGTACAACAGTAG TGTGACGGCGGGGCTACCCAGTTGGCTTATTGGGGTAGGGTAAGTAGCGC ATTTGGTTTAGATCCGGCATGATGAGAAAATGTAAGCAGGAAGGGCACTT TTCTCGTGGGTCAGTAGGGCACTAGGGCCCTGGTCCCCGACGAAGAACCC CGCGGTTTCCGGCCAAAAGAGGGTGAACCAGCGGCAAAACAAGGTGTAGC TGGAAGCTGAGTAGCCACGCGAAGGTGAACCGTGTACTCTTTCGGCCAAA AGAAGGTGCTTGGTAGGAATTTTCATTTGAACCCAAAGTAGGACACCTTG TTTTGGCCGGAAAAGCACAAGGTGCACCTTGTTTTGGCCGTTGCCTTAAA ATAAATCCGTGTCGTTGCTTGTGTATGTGCAAATGGAGATGTGTCGAAGA ACCGAGTCGACAAACATGGATCTGGGCAAAATACGTCCTCCATCGCCTGG TGGTTGGCGTAGACGCGTTTTCATTCTGATCCCGCTCCCTGCGATACGGG AATATCCTCGGGTCGATGTAGCAGCGGCGCTGAAAAATACGCCACTCATC GCATGGGTTTTCTAGATAGACAACAACCAGCGTATCTATATTTTTTGGTT GTGGTTGCGGCTACCACTGACTCTTGGTCGTCCGAGCTACTACTTATCTA TGTAGATCACCTTGTACGGGAAAGTATCGCCCATGGGATCTACTTTCTGT GGCACGACGGGTTTTGTATTCCGCGCGCAGCTCGCCCTTCCTTCACGCCG TACACCGACTCATGGCATCATGTGCTTGGTGCAAGCAGTGTCTCCCTGGT AAAAACAAAAATGGGCGTGATTCGTTCTGACACTGGAAGAGGATGCGAGG TCTATGATCTAGTGGCCACAAAGAAAGGCTGGCTGTAGGATTTTTTTGAC AGGATAGTTTTAATGTTGTGTGGGTCTCTCGACCGCTCTTGGCACGCCGG TGTCGGCTTGGGCTTTTTTGTCAGAACAACGATGCACAATCCTTGTCATC CTTCCCTCCGAAAGAGTCGGGCGTGTGGTCCATTCCTCTGATGTTTGATA GTGGTGCGGACGCCGCCTTTTCTATTGGCATCCTCACATATTAAACGTTT CCACATCCCCAACACAAGGTCAACAAGGGAATGGGTGCGCAAGACAACAG CTAATACTTACCTGTGCAGGCTTTTCCAACCCCGGCGCAACTTATCCGCA AAGCATCGGTTGAAAGAAGCCGGACCTCTCTGTTGCCTTAGCTACACACG AACATGTGCTACTGCTTCACAACAATCCAATAAATAAACCTTTCTGCCCG AAACCTGCAGGTGAAGTTAAACGGCGACAAAGTGGGTGAGTACGAGTCCT ACCCCGGATCTACCTTCAACTCCTTCGGAATCCAAGAGAACGGCGTGCAC ACCGTTACCATGGAGTCCGTCGGTATCGACAAGGACGACTGGATTAGCCT GCTCGAGGTACTATTTTATGTACAAATATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13412:896..2876+

>mRNA_L-elsbetiae_contig13412.2633.1 ID=mRNA_L-elsbetiae_contig13412.2633.1|Name=mRNA_L-elsbetiae_contig13412.2633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig13412:896..2876+ (Laminarionema elsbetiae ELsaHSoW15)
GGTTGCCTGCCCGATCTTGCCCACGACGGCGTCGGCGTGGAAGACGCGGA
GTCAAGGTGGTCGTGCGCCGAGGAAATCGTGCCCGACGGAGGCCAGTGCG
AGATTACCTTTTCGTTCGACAGCCCCCAAGACGTCACCGATGTGCAGGTT
GCCTTCTGGAAGGGAGACGAGCGCACTCGTACCCTCAAGGGTTGCCTGCC
CGATCTTGCCCACGACGGCGTCGGCGTGGAAGACGCGGAGTCAAGGTGGT
CGTGCGCCGAGGAAATCGTGCCCGACGGAGGCCAGTGCGAGATTACCTTT
TCGTTCGACAGCCCCCAAGACGTCACCGATGTGCAGGTTGCCTTCTGGAA
GGGAGACGAGCGCACTCGTACCCTCAAGTTAAACGGCGACAAAGTGGGTG
AGTACGAGTCCTACCCCGGATCTACCTTCAACTCCTTCGGAATCCAAGAG
AACGGCGTGCACACCGTTACCATGGAGTCCGTCGGTATCGACAAGGACGA
CTGGATTAGCCTGCTCGAGGTACTATTTTATGTACAAATATAGTTAAACG
GCGACAAAGTGGGTGAGTACGAGTCCTACCCCGGATCTACCTTCAACTCC
TTCGGAATCCAAGAGAACGGCGTGCACACCGTTACCATGGAGTCCGTCGG
TATCGACAAGGACGACTGGATTAGCCTGCTCGAGGTACTATTTTATGTAC
AAATATAG
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