mRNA_L-elsbetiae_contig1341.2628.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1341.2628.1
Unique NamemRNA_L-elsbetiae_contig1341.2628.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1341.2628.1 vs. uniprot
Match: A0A6H5KJQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ9_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 4.470e-46
Identity = 128/208 (61.54%), Postives = 145/208 (69.71%), Query Frame = 1 
Query:   76 MTQFLRAVSESRMEDALALAQTILTFEPQNAMILDYQATLAQYINNERDLAIAREDDADSDGDXXXXXXXXXXXXXXX---------------DASTEEASGEESPEEGERETAVAAPSSDGSAHGEVEKAHRLGG--DEKELQRLGGVLRDLRETRAAESLEVAARWDEEKIAAPLREVEQVLWRFLPEEAKQAAHKRAEDDAAGRR 648
            MTQFLRAVSE+RME ALALAQTIL FEP+NA+ILDYQATLAQYINNER+LA  RE+DAD    XXXXXXXXXXXXXXX               D STEEAS EE    GE +    AP  D       +KA R G   D++ELQRLGGVLRDLR+TR A S E+ +RWDE+K AA  REVE VL +FLP+ A+QAA KRA D A  +R
Sbjct:    1 MTQFLRAVSENRMEQALALAQTILKFEPRNAIILDYQATLAQYINNERELASVREEDADXXXXXXXXXXXXXXXXXXXGNAADVSSSTATGSDDGSTEEASAEEI--SGEDKDVAGAPRGDAPCQ-VAQKASRQGSVHDKQELQRLGGVLRDLRKTREARSQEIESRWDEDKFAASQREVEAVLRKFLPDAARQAAEKRAADGAPDQR 205
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BLAST of mRNA_L-elsbetiae_contig1341.2628.1 vs. uniprot
Match: A0A7S0SQG9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SQG9_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.670e-5
Identity = 26/74 (35.14%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:   31 EAKDNGAPTRAPLRLMTQFLRAVSESRMEDALALAQTILTFEPQNAMILDYQATLAQYINNERDLAIAREDDAD 252
            + KD+    +AP+  + +FL A+ ES+ + AL L++ IL++EP N ++ +YQ TL++ +  E   A++RE + D
Sbjct:   14 KVKDDDDKYKAPVEFVCEFLVAIKESKYKIALELSEKILSYEPTNKLVKEYQETLSKLVLQEEQEALSREKEED 87
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1341.2628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJQ9_9PHAE4.470e-4661.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0SQG9_9STRA2.670e-535.14Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1341contigL-elsbetiae_contig1341:14799..18245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_009810.1
Exons6
Model size1320
Cds size672
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815512.7331204-UTR-L-elsbetiae_contig1341:14798..154461622815512.7331204-UTR-L-elsbetiae_contig1341:14798..15446Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1341 14799..15446 -
1691682935.0789845-UTR-L-elsbetiae_contig1341:14798..154461691682935.0789845-UTR-L-elsbetiae_contig1341:14798..15446Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1341 14799..15446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815512.7472062-CDS-L-elsbetiae_contig1341:15446..155611622815512.7472062-CDS-L-elsbetiae_contig1341:15446..15561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1341 15447..15561 -
1691682935.0876954-CDS-L-elsbetiae_contig1341:15446..155611691682935.0876954-CDS-L-elsbetiae_contig1341:15446..15561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1341 15447..15561 -
1622815512.7606597-CDS-L-elsbetiae_contig1341:16166..163031622815512.7606597-CDS-L-elsbetiae_contig1341:16166..16303Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1341 16167..16303 -
1691682935.0961592-CDS-L-elsbetiae_contig1341:16166..163031691682935.0961592-CDS-L-elsbetiae_contig1341:16166..16303Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1341 16167..16303 -
1622815512.7745965-CDS-L-elsbetiae_contig1341:16689..167991622815512.7745965-CDS-L-elsbetiae_contig1341:16689..16799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1341 16690..16799 -
1691682935.1048582-CDS-L-elsbetiae_contig1341:16689..167991691682935.1048582-CDS-L-elsbetiae_contig1341:16689..16799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1341 16690..16799 -
1622815512.7908213-CDS-L-elsbetiae_contig1341:17108..172041622815512.7908213-CDS-L-elsbetiae_contig1341:17108..17204Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1341 17109..17204 -
1691682935.1139057-CDS-L-elsbetiae_contig1341:17108..172041691682935.1139057-CDS-L-elsbetiae_contig1341:17108..17204Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1341 17109..17204 -
1622815512.8098364-CDS-L-elsbetiae_contig1341:17458..175301622815512.8098364-CDS-L-elsbetiae_contig1341:17458..17530Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1341 17459..17530 -
1691682935.1261048-CDS-L-elsbetiae_contig1341:17458..175301691682935.1261048-CDS-L-elsbetiae_contig1341:17458..17530Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1341 17459..17530 -
1622815512.8263762-CDS-L-elsbetiae_contig1341:18103..182451622815512.8263762-CDS-L-elsbetiae_contig1341:18103..18245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1341 18104..18245 -
1691682935.1337264-CDS-L-elsbetiae_contig1341:18103..182451691682935.1337264-CDS-L-elsbetiae_contig1341:18103..18245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1341 18104..18245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1341.2628.1prot_L-elsbetiae_contig1341.2628.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1341 15447..18245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1341.2628.1

>prot_L-elsbetiae_contig1341.2628.1 ID=prot_L-elsbetiae_contig1341.2628.1|Name=mRNA_L-elsbetiae_contig1341.2628.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=224bp
MPQEDLAPVAEAKDNGAPTRAPLRLMTQFLRAVSESRMEDALALAQTILT
FEPQNAMILDYQATLAQYINNERDLAIAREDDADSDGDESDSSSGEEPSS
TSTDASTEEASGEESPEEGERETAVAAPSSDGSAHGEVEKAHRLGGDEKE
LQRLGGVLRDLRETRAAESLEVAARWDEEKIAAPLREVEQVLWRFLPEEA
KQAAHKRAEDDAAGRRQHSWCRK*
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mRNA from alignment at L-elsbetiae_contig1341:14799..18245-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1341.2628.1 ID=mRNA_L-elsbetiae_contig1341.2628.1|Name=mRNA_L-elsbetiae_contig1341.2628.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3447bp|location=Sequence derived from alignment at L-elsbetiae_contig1341:14799..18245- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCAGGAAGACTTAGCTCCGGTCGCGGAGGCCAAGGACAATGGGGC
ACCTACTAGGGCACCGCTCCGACTCATGACCCAATTCTTGAGAGCAGTGT
CGGAGAGCCGCATGGAGGACGCTCTGGCGCTTGCACAAACAAGTATGAGC
GAGATGCTAGCGATTGGACTACAACTGCCTTGGTGTAAAGATTCAAAGCT
TTGTGAGCGAGGGAGCGAGTATTCTGATGTACAAGGACCAACCAAGAATT
TCCTATGCTTCCAAGGATTCTGGAACACGCCGAAATCGAAATCTCACATA
TAGGATCCACCTACCTGCACATACATTACAAATAAATGTCTTATTTCTAG
TCTATTTAGACATTTAGACTAGACTCTAGACTATATGCATCTGGTCCATA
CACCCAGTCAAGGAGCCCCGGGGGGCGAGGCCAGGTTCGACATGAACCTT
TCTTACTTAGCTGTTGTGTTTAACGAGCTGATTCAATCGACAGGGTTTGC
TTCCTCTGTTGTAGGTTGAACACAAACGATATCTACAGGTTTGAGTTTCA
GATGACAACATGTAGTCTTCAAACGCTCTCGCCACCTCAATTTACATGTT
ATTTACATTCAGCTGCGCACTTGATACTTCGTACGATATTACTGGTATCA
TTTGTTTCGCGTGTGTGCGTGCCTGCTCCCACGTGTGTGTGTCTGCTTTA
TGTTGACCCCTACAGTTCTGACATTCGAGCCACAAAACGCCATGATCTTG
GACTACCAGGCTACGTTAGCGCAGTACATCAACAATGGTGAGAAGCTCTA
AAAGAGGCAGGCCCTGACGCTTTGACCAAGTGTTTGCGTTGGGTCTGTGC
TTGTGATAATTCCAATCTGCATTTTTCTTGGCACTCACCTGTACTGCACC
ACTTCACTCACCTCTCTGTAGTACAGCAGCAGAATACGGACAGGCAGATA
CTTTACAATATTTTGACGAAACATCGCCAACCCTCTTCATCATCTCTCTT
CTTTCTTCTACTGCTTGTTTTGTGTTTCGCGCACAACAAAGAACGCGACT
TGGCGATAGCTCGAGAAGACGATGCCGATAGCGATGGCGACGAAAGTGAC
AGCAGCAGCGGAGAAGAGCCGTCGTCAACTTCAACAGGTTCTGTAGTAAG
GGACGACTTTAAGTATTATTGATGTACTTCGACCCGACCATTAACGGGAC
AACGCGCCGGTACATACATCTTGTACGACACTTCCATGCGACCGTTCGTT
AGGCACGAGTGGTCATCCTTGAGCACCCACCACGTGAACGCTTCCTTCAA
GGGATGCTTGTTGTACGTGCAGCACTCAGATACCTCGGCCTCGCCGGCTT
CTCGTACTCTGATGCAGCTTTGCGTTCTGTTTCCCAACGACGAACGAACA
TGCATTGCCGTATTGTTATGTTGTTGATGTTTCATGTCCAACGAAGACGC
TTCAACAGAAGAAGCCAGTGGTGAAGAATCGCCAGAAGAAGGAGAACGCG
AGACAGCTGTAGCAGCGCCTTCTTCTGATGGTAGTGCACATGGCGAAGTT
GAAAAGGTTAGCATGTACGTGCGGTTTCCAGGCAGGACACGAGTTTGGGA
TACATGCTGTGATGAAGTCGTTGGCGAACAAACGGGGATGATGCAGCTTA
GTCTCGAGCGATATAATTGTGGGATCTACAAGATGCTTAGTTAATTTAGG
TGACTTACCCGTTGCACAACACGCGGCCAATCTATTCTGCAGCTGCCAGA
CCATCAAGCACCACTTACAACATACATGCACACAGCATACGCTCAAACTT
GAGATTTTGAAACATTGATGGAAAGAGTTTTACTCGAGGACGGCGGGTTT
GTGATTGTAGTGGTCCGCAAAATATATAGAAGTATTTATATATTTATATT
TAGTACACCTTCGAGATCAATAACCCATTATTTTGGCGACAGGCACACCG
ACTAGGGGGTGACGAGAAGGAATTGCAGCGGCTTGGAGGTGTGCTCCGAG
ACTTACGAGAGACAAGGGCGGCCGAAAGCCTTGAGGTGGCGGCTCGGTGG
GATGAGGAAAAAATTGCTGCCCCTTTGAGGTACGGACTTTTATGTACCCC
CGGTACGACGTGGTGACGCGGGGGGGCTGTATCGATATTTTAGCCTCCCC
TCGCAACGGCAGGCCCGCTCATTTCGTGGGTTGCTTCGCATCGGGGTTAT
AATGGTAATATGTATGTATGTACATTATTGATGTACATGTAAACATACTT
CATGTCACGATGTGTTGTTGAGCCACGGGCGGTGGTCAATGCACATTTTA
TTTACTTCATGGAACATATACGTTGCTTGCTTTTGCTATGGAAACCTCGA
ATTCGACGTCTTGGCAAGGGTTTCATGCATCCTAAACAAACCCTATCTGT
GCGTTGATCGAGTATGATTTCGTATCCATCGCATGTATTTTCAATATTCG
ACCTGGGTACAAAACCTCTACTGCTGTACTCGATTTTTTGCATAGTAAAA
AAACAATATAAATAACAGCATGTATGTGTGGGTACCACCTTCATAAAGGG
TCGGATCACACTAACGTCTGTCGAGGACGAAACCCTCTTTTCCACACATG
GCAGCTGTAGCTTACTTTTTTTGTGAAATTGCAACGTCAAGGCGTGATGT
GCACGTACGTGTTGTTTTGCACGCTTTGGCGCAGGGAAGTGGAGCAAGTT
CTATGGAGGTTTCTTCCTGAGGAAGCGAAGCAGGCAGCTCACAAGCGGGC
GGAAGACGACGCTGCAGGTCGTCGGCAGCATAGTTGGTGCCGTAAATAGC
TGGTGTCTCTATGTACTACGTTTCTCTTACAGAGTTCTCTATCCGGACAT
ACATCTCACTTGACATATATCCGGGTATCCCAAGTCAGCCCATCTTTAGT
GGTGGCGCCATCTGCATGTCTCTCATCTGTGATTTTTTTCCAGAAACAAG
TAGGCGGGGGGGGGTTGCATGTACATATTTATACGTCGAAGTATTTCTGC
ATCATTCATTCGCTCTCTCTTGGCATCCAGCAAAAATGCTCCCCCATTGA
CAACAAACTGATCGGAGTCACCCCACATTTGCGTGCCGAGCACAGACATT
GATGATGTAGGTTGGTTACAGTTGGTCCAAAAAGAAGCCCCTGTCATGCA
AGCGCACGATCCTATAGTCTAGTCTCAGTGTAATATCGATGTACATACAA
AGCTGGTCCATGCTTTGTGTGTGTCCTTCCCATTCATTTTGGCGACGGCC
CCCCCAGTCAAGGGGAGACGTGTACTACACGTTGCGGTGTACTTAGAGGT
ACTACACTTGCAGTGCATTTGTCTGTACAACTAGAACCAACCGGGGTTGG
TTACGCAGGAGGGGGTGAACACTGGGGCTTTTTTCTTCTTTTTATTTTAT
TTTTTTGCCCCTTCTCCTGCGGTGCTAGCCTTCATTTTTATCGCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1341:14799..18245-

>mRNA_L-elsbetiae_contig1341.2628.1 ID=mRNA_L-elsbetiae_contig1341.2628.1|Name=mRNA_L-elsbetiae_contig1341.2628.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1344bp|location=Sequence derived from alignment at L-elsbetiae_contig1341:14799..18245- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCAGGAAGACTTAGCTCCGGTCGCGGAGGCCAAGGACAATGGGGC
ACCTACTAGGGCACCGCTCCGACTCATGACCCAATTCTTGAGAGCAGTGT
CGGAGAGCCGCATGGAGGACGCTCTGGCGCTTGCACAAACAAATGCCCCA
GGAAGACTTAGCTCCGGTCGCGGAGGCCAAGGACAATGGGGCACCTACTA
GGGCACCGCTCCGACTCATGACCCAATTCTTGAGAGCAGTGTCGGAGAGC
CGCATGGAGGACGCTCTGGCGCTTGCACAAACAATTCTGACATTCGAGCC
ACAAAACGCCATGATCTTGGACTACCAGGCTACGTTAGCGCAGTACATCA
ACAATGTTCTGACATTCGAGCCACAAAACGCCATGATCTTGGACTACCAG
GCTACGTTAGCGCAGTACATCAACAATGAACGCGACTTGGCGATAGCTCG
AGAAGACGATGCCGATAGCGATGGCGACGAAAGTGACAGCAGCAGCGGAG
AAGAGCCGTCGTCAACTTCAACAGAACGCGACTTGGCGATAGCTCGAGAA
GACGATGCCGATAGCGATGGCGACGAAAGTGACAGCAGCAGCGGAGAAGA
GCCGTCGTCAACTTCAACAGACGCTTCAACAGAAGAAGCCAGTGGTGAAG
AATCGCCAGAAGAAGGAGAACGCGAGACAGCTGTAGCAGCGCCTTCTTCT
GATGGTAGTGCACATGGCGAAGTTGAAAAGACGCTTCAACAGAAGAAGCC
AGTGGTGAAGAATCGCCAGAAGAAGGAGAACGCGAGACAGCTGTAGCAGC
GCCTTCTTCTGATGGTAGTGCACATGGCGAAGTTGAAAAGGCACACCGAC
TAGGGGGTGACGAGAAGGAATTGCAGCGGCTTGGAGGTGTGCTCCGAGAC
TTACGAGAGACAAGGGCGGCCGAAAGCCTTGAGGTGGCGGCTCGGTGGGA
TGAGGAAAAAATTGCTGCCCCTTTGAGGCACACCGACTAGGGGGTGACGA
GAAGGAATTGCAGCGGCTTGGAGGTGTGCTCCGAGACTTACGAGAGACAA
GGGCGGCCGAAAGCCTTGAGGTGGCGGCTCGGTGGGATGAGGAAAAAATT
GCTGCCCCTTTGAGGGAAGTGGAGCAAGTTCTATGGAGGTTTCTTCCTGA
GGAAGCGAAGCAGGCAGCTCACAAGCGGGCGGAAGACGACGCTGCAGGTC
GTCGGCAGCATAGTTGGTGCCGTAAATAGGGAAGTGGAGCAAGTTCTATG
GAGGTTTCTTCCTGAGGAAGCGAAGCAGGCAGCTCACAAGCGGGCGGAAG
ACGACGCTGCAGGTCGTCGGCAGCATAGTTGGTGCCGTAAATAG
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