mRNA_L-elsbetiae_contig13240.2523.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13240.2523.1
Unique NamemRNA_L-elsbetiae_contig13240.2523.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13240.2523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13240contigL-elsbetiae_contig13240:973..2795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_002360.2
Exons2
Model size568
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13240.2523.1prot_L-elsbetiae_contig13240.2523.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13240 973..1314 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.4831362-CDS-L-elsbetiae_contig13240:972..13141622815502.4831362-CDS-L-elsbetiae_contig13240:972..1314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13240 973..1314 -
1691682929.5553396-CDS-L-elsbetiae_contig13240:972..13141691682929.5553396-CDS-L-elsbetiae_contig13240:972..1314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13240 973..1314 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.49311-UTR-L-elsbetiae_contig13240:1314..13521622815502.49311-UTR-L-elsbetiae_contig13240:1314..1352Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13240 1315..1352 -
1691682929.5678167-UTR-L-elsbetiae_contig13240:1314..13521691682929.5678167-UTR-L-elsbetiae_contig13240:1314..1352Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13240 1315..1352 -
1622815502.5086362-UTR-L-elsbetiae_contig13240:2608..27951622815502.5086362-UTR-L-elsbetiae_contig13240:2608..2795Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13240 2609..2795 -
1691682929.5780973-UTR-L-elsbetiae_contig13240:2608..27951691682929.5780973-UTR-L-elsbetiae_contig13240:2608..2795Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13240 2609..2795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13240.2523.1

>prot_L-elsbetiae_contig13240.2523.1 ID=prot_L-elsbetiae_contig13240.2523.1|Name=mRNA_L-elsbetiae_contig13240.2523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MAAPQDSLRPGGVHGVFGAGVPVVAAQQAAVAAAAAVAVAAAAAAETDAS
MMPPPPPSSWTAMQRQQPPGGRAGFSPPSSPVLVVDLDGEKSEDGGDDND
GLGLLPGEAVAEAT
back to top

mRNA from alignment at L-elsbetiae_contig13240:973..2795-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13240.2523.1 ID=mRNA_L-elsbetiae_contig13240.2523.1|Name=mRNA_L-elsbetiae_contig13240.2523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1823bp|location=Sequence derived from alignment at L-elsbetiae_contig13240:973..2795- (Laminarionema elsbetiae ELsaHSoW15)
TGAGACCCCAGGTCAACTTTTCCCGATCACCACACGCAAACCACTTGCAA
CAACCAGTAACGAACCCGTCTCACCGTAGCAAAACAACTACACCGTTCAT
CGCTCTGGGGTGGTGGATCATATCGGTCAGTGGAGCGACGAAGCGCGCAC
GCGTCCTCTCTCTTCAAGCTTTCCCTTCGTGGAATTGGTGAGCTTGGTGA
TTTGGCGTGACTCTCCCTCACCCAAAAAGAACACGACGAGCGGGGTTCTC
ACCGTGTGCGTGATGTATCGTGTTGGGCAGGTTGGTGCTAGACTGCACTA
GCTTGAGCTTTGTGCTTCATGGGCAGTTGCGAGAGAAGGGCAGCACTCTC
TGCCCCGACTCAAGATTGAAGGCGCAAGCTGCTTGGTTGTCGCGACAGCG
TTTTCTAAACTTGGACTTGTGGTAAAACACACAGCGTGCGCGTGGCACCA
TGCAGGAGAAACAATGCAAACAAGGGCGTACGCTGATTACCCGCCCTTCT
TCGCCATGTCATCGTCCTCGCCATGGCATAGCCGCGCAGCTCTCCGTGGT
GGTCTTCAATGGCTTGCTACACATAACCGCATAAATCCTCGCTCCGCGCC
TAAAAATCAGAAAATCAGGCCCATTTTGATACGCACACCTGTGTGCCTGC
GTGTTGTGATTTTTTTCCTTCAGGCTTATCTGTACTGATGGTTGCGGTGT
GCTTGTCCAGATATCATCTTGCTTGCGCACGGCATGTTTCGATAATCACG
GCCCCCCTATACACACCCCACACGCACCCCGAACAGGTGGTTTGAGCAAC
AATTTTGTTGCGTCAACAAAACACCCACACCCCGCCTGCCCTCGACGATC
GCACCCTCGCCTTCTCCAATGGCTTTTCATTTCAACGCACGGTTGAATCA
CCAATTGCCTGTCGCACCTCAACCACGATAGGAAATCTGGTCCCTGCATG
AGGTTTTGCACTTTCGTATATCTCTGGAAACGGTGAACCATTATTTTCAA
CTTGACTCGAAGTGTTGGCATTTTGTTTTTTTAACAACTCTATCGTACAT
ATCTACTAGATATTTCGTACATTATCTAGATACTTCGTACACTTCCCCAA
CGTTACAACTCTTTCATGGCGTCTATCATCTACCCGTAGGAGCCGTCATT
TTCCCTTTTTTTTTCTCTCTTGGCCGCGGCCAACTGTCTCGGATCGCAAA
TCTACCATCCAGCGAGCGATCAATAATATCGGGTGTGTGTGTGACTTGAT
GTCCTCAAAGATTGGTCTTTTTCGGCGAACCTACCCAACACACAGATACT
TATTCTTGCCTCCAAGATATTCGGGCGTTGTATTTTACCCGCAACCACAC
CACCACCGCCAGCTAACAAAACCTCACGCCGTATTTGGCCGTTTCGCTTT
GGCTTGCCCGCCTGCCCCCGTTTCTTTTCCTGGCGGCGAATAGGTTACAT
TGCAGAATAAATAGATAAGACTAGACCAAGAATGGCTGCTCCTCAGGACT
CGCTTCGCCCTGGAGGGGTGCACGGGGTGTTCGGTGCCGGTGTGCCAGTA
GTGGCAGCGCAGCAGGCAGCAGTGGCGGCGGCGGCGGCGGTGGCGGTAGC
AGCGGCGGCGGCAGCTGAAACGGATGCTTCGATGATGCCGCCGCCGCCGC
CATCATCATGGACAGCAATGCAAAGGCAGCAGCCTCCAGGAGGAAGGGCC
GGCTTCTCGCCGCCATCATCGCCTGTCCTAGTAGTAGATCTTGACGGGGA
AAAATCCGAGGACGGCGGAGACGACAACGATGGCCTTGGCTTGTTGCCGG
GGGAGGCAGTGGCGGAAGCGACG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13240:973..2795-

>mRNA_L-elsbetiae_contig13240.2523.1 ID=mRNA_L-elsbetiae_contig13240.2523.1|Name=mRNA_L-elsbetiae_contig13240.2523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig13240:973..2795- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGCTCCTCAGGACTCGCTTCGCCCTGGAGGGGTGCACGGGGTGTT
CGGTGCCGGTGTGCCAGTAGTGGCAGCGCAGCAGGCAGCAGTGGCGGCGG
CGGCGGCGGTGGCGGTAGCAGCGGCGGCGGCAGCTGAAACGGATGCTTCG
ATGATGCCGCCGCCGCCGCCATCATCATGGACAGCAATGCAAAGGCAGCA
GCCTCCAGGAGGAAGGGCCGGCTTCTCGCCGCCATCATCGCCTGTCCTAG
TAGTAGATCTTGACGGGGAAAAATCCGAGGACGGCGGAGACGACAACGAT
GGCCTTGGCTTGTTGCCGGGGGAGGCAGTGGCGGAAGCGACGATGGCTGC
TCCTCAGGACTCGCTTCGCCCTGGAGGGGTGCACGGGGTGTTCGGTGCCG
GTGTGCCAGTAGTGGCAGCGCAGCAGGCAGCAGTGGCGGCGGCGGCGGCG
GTGGCGGTAGCAGCGGCGGCGGCAGCTGAAACGGATGCTTCGATGATGCC
GCCGCCGCCGCCATCATCATGGACAGCAATGCAAAGGCAGCAGCCTCCAG
GAGGAAGGGCCGGCTTCTCGCCGCCATCATCGCCTGTCCTAGTAGTAGAT
CTTGACGGGGAAAAATCCGAGGACGGCGGAGACGACAACGATGGCCTTGG
CTTGTTGCCGGGGGAGGCAGTGGCGGAAGCGACG
back to top