mRNA_L-elsbetiae_contig13208.2506.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13208.2506.1
Unique NamemRNA_L-elsbetiae_contig13208.2506.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13208.2506.1 vs. uniprot
Match: D8LSI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI8_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.330e-20
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:  604 GRCGNGTETATKMASAATPEAGFADGYGDYARFDGPSGLVAAEDGTLFVADTNNHLVQ 777
            GRCGNGTE+AT+MA+ ATPEAGFADG G YARFDGPSGL AAEDGTLFVADTNNHL++
Sbjct:  323 GRCGNGTESATRMAAEATPEAGFADGDGSYARFDGPSGLAAAEDGTLFVADTNNHLIR 380
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BLAST of mRNA_L-elsbetiae_contig13208.2506.1 vs. uniprot
Match: A0A7S2SQR7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQR7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.900e-13
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:  583 PFLRTWTGRCGNGTETATKMASAATPEAGFADGYGDYARFDGPSGLVAAEDGTLFVADTNNHLVQ 777
            P +  +TGRCGNGT +      AA PE G+ADG+GD ARFD P GL    DGT+FVADT NHL++
Sbjct:   35 PRVSCFTGRCGNGTVSYVATRHAAPPEPGYADGFGDVARFDSPGGLEVDGDGTIFVADTGNHLIR 99
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BLAST of mRNA_L-elsbetiae_contig13208.2506.1 vs. uniprot
Match: A0A6H5K8Y6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y6_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 4.450e-12
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:  640 MASAATPEAGFADGYGDYARFDGPSGLVAAEDGTLFVADTNNHLV 774
            MA+ ATPEAGFADG GD+ARFDGP GL A EDGTLFVADTNNHLV
Sbjct:    1 MAAEATPEAGFADGDGDFARFDGPWGLAATEDGTLFVADTNNHLV 45
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13208.2506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSI8_ECTSI1.330e-2084.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2SQR7_9STRA1.900e-1356.92Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6H5K8Y6_9PHAE4.450e-1284.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13208contigL-elsbetiae_contig13208:4114..5196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue3.8e-20
Seed eggNOG ortholog2880.D8LSI8
Preferred nameFBN3
KEGG koko:K02599,ko:K17495
KEGG Pathwayko01522,ko04320,ko04330,ko04658,ko04919,ko05020,ko05165,ko05200,ko05206,ko05224,map01522,map04320,map04330,map04658,map04919,map05020,map05165,map05200,map05206,map05224
KEGG ModuleM00682
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium ion binding
EggNOG OGsKOG1217@1,KOG1217@2759,KOG2177@1,KOG2177@2759,KOG4297@1,KOG4297@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009
Ec32 ortholog descriptionSix-bladed beta-propeller, TolB-like
Ec32 orthologEc-09_001800.3
Exons1
Model size1083
Cds size615
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13208.2506.1prot_L-elsbetiae_contig13208.2506.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13208 4513..5127 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.4771078-UTR-L-elsbetiae_contig13208:4113..45121622815500.4771078-UTR-L-elsbetiae_contig13208:4113..4512Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13208 4114..4512 +
1691682928.3429573-UTR-L-elsbetiae_contig13208:4113..45121691682928.3429573-UTR-L-elsbetiae_contig13208:4113..4512Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13208 4114..4512 +
1622815500.5029604-UTR-L-elsbetiae_contig13208:5127..51961622815500.5029604-UTR-L-elsbetiae_contig13208:5127..5196Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13208 5128..5196 +
1691682928.3618102-UTR-L-elsbetiae_contig13208:5127..51961691682928.3618102-UTR-L-elsbetiae_contig13208:5127..5196Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13208 5128..5196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.4898503-CDS-L-elsbetiae_contig13208:4512..51271622815500.4898503-CDS-L-elsbetiae_contig13208:4512..5127Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13208 4513..5127 +
1691682928.3535597-CDS-L-elsbetiae_contig13208:4512..51271691682928.3535597-CDS-L-elsbetiae_contig13208:4512..5127Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13208 4513..5127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13208.2506.1

>prot_L-elsbetiae_contig13208.2506.1 ID=prot_L-elsbetiae_contig13208.2506.1|Name=mRNA_L-elsbetiae_contig13208.2506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=205bp
MTLGFDLHPSPEMFSGKSSNSRKDLAFSATDGSHGTSWEVIPLLFFRCTQ
RGLKTSILTLHPFLRTWTGRCGNGTETATKMASAATPEAGFADGYGDYAR
FDGPSGLVAAEDGTLFVADTNNHLVQNKHGVLFMRGFQTVYTRLPSCGRP
KMLITPCGRNDQSRESTPFDGLQNSTPWTMDKPIVHCFNNIIQGEPIDRH
CRIQ*
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mRNA from alignment at L-elsbetiae_contig13208:4114..5196+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13208.2506.1 ID=mRNA_L-elsbetiae_contig13208.2506.1|Name=mRNA_L-elsbetiae_contig13208.2506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1083bp|location=Sequence derived from alignment at L-elsbetiae_contig13208:4114..5196+ (Laminarionema elsbetiae ELsaHSoW15)
GGACCGAGAGGCACGCGACGCTATGTATGACGCCCTCCAAAAATCGTCAC
AATACAACCCTCCCCCTTTAGTGACATGTACACGAGGCGAGGCGAAATTT
TCGGCCCATTTCATCTTCGATAGACCACCCGCGATCCTATGGTGCCGCGT
GCTCCGCCACAAAGAAGATGTCCAGAGAATGCCGTCTGCTCTGCCATTGC
GACTACGTGCATTCCACAATCCAGAGCTCCCGTTTTTTTTTTCTCTGTCC
GGGACCCTCTCTGTTCTCGTCGCTGGATGGCTGTCTCACCCAGGTCTCGT
CCTGTACGTGGCTGACACCAACAACCACCGCTTGCGCAAAATCTCGGGAG
ACGTGGCGAACGGCGCCGGCACCGTGACTTGTCTGGCTGGAAGGTGAGCA
TGACGCTGGGTTTCGACCTCCATCCGTCCCCCGAAATGTTTTCCGGCAAG
TCATCCAATTCAAGAAAGGACCTTGCTTTCTCAGCCACGGACGGGTCCCA
TGGGACCAGTTGGGAGGTAATACCACTGTTGTTTTTTCGGTGTACACAGC
GCGGCCTAAAAACTAGCATCTTAACGCTCCACCCCTTTTTGCGGACATGG
ACGGGAAGATGCGGGAACGGAACCGAGACCGCGACCAAGATGGCATCGGC
AGCGACACCTGAGGCTGGGTTTGCCGACGGATACGGAGATTATGCGAGGT
TCGACGGTCCGTCGGGCCTGGTAGCGGCGGAAGACGGGACGCTCTTTGTG
GCGGACACGAACAATCACCTGGTACAGAACAAGCACGGAGTTTTATTTAT
GCGGGGTTTCCAAACCGTGTACACTCGATTGCCGTCGTGCGGTAGACCGA
AGATGTTGATTACTCCTTGCGGACGAAATGATCAGTCACGTGAGAGCACA
CCCTTTGATGGTCTTCAAAATTCCACACCGTGGACAATGGACAAACCAAT
AGTCCATTGCTTCAACAATATAATACAGGGCGAACCTATCGATAGACATT
GTCGGATACAATAGATGGCGGAACATATCTATCGATACCTATTGCAGGGG
GCAATGCATTTTGTACCCGTCCCTGATAGTCTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13208:4114..5196+

>mRNA_L-elsbetiae_contig13208.2506.1 ID=mRNA_L-elsbetiae_contig13208.2506.1|Name=mRNA_L-elsbetiae_contig13208.2506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1230bp|location=Sequence derived from alignment at L-elsbetiae_contig13208:4114..5196+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGCTGGGTTTCGACCTCCATCCGTCCCCCGAAATGTTTTCCGGCAA
GTCATCCAATTCAAGAAAGGACCTTGCTTTCTCAGCCACGGACGGGTCCC
ATGGGACCAGTTGGGAGGTAATACCACTGTTGTTTTTTCGGTGTACACAG
CGCGGCCTAAAAACTAGCATCTTAACGCTCCACCCCTTTTTGCGGACATG
GACGGGAAGATGCGGGAACGGAACCGAGACCGCGACCAAGATGGCATCGG
CAGCGACACCTGAGGCTGGGTTTGCCGACGGATACGGAGATTATGCGAGG
TTCGACGGTCCGTCGGGCCTGGTAGCGGCGGAAGACGGGACGCTCTTTGT
GGCGGACACGAACAATCACCTGGTACAGAACAAGCACGGAGTTTTATTTA
TGCGGGGTTTCCAAACCGTGTACACTCGATTGCCGTCGTGCGGTAGACCG
AAGATGTTGATTACTCCTTGCGGACGAAATGATCAGTCACGTGAGAGCAC
ACCCTTTGATGGTCTTCAAAATTCCACACCGTGGACAATGGACAAACCAA
TAGTCCATTGCTTCAACAATATAATACAGGGCGAACCTATCGATAGACAT
TGTCGGATACAATAGATGACGCTGGGTTTCGACCTCCATCCGTCCCCCGA
AATGTTTTCCGGCAAGTCATCCAATTCAAGAAAGGACCTTGCTTTCTCAG
CCACGGACGGGTCCCATGGGACCAGTTGGGAGGTAATACCACTGTTGTTT
TTTCGGTGTACACAGCGCGGCCTAAAAACTAGCATCTTAACGCTCCACCC
CTTTTTGCGGACATGGACGGGAAGATGCGGGAACGGAACCGAGACCGCGA
CCAAGATGGCATCGGCAGCGACACCTGAGGCTGGGTTTGCCGACGGATAC
GGAGATTATGCGAGGTTCGACGGTCCGTCGGGCCTGGTAGCGGCGGAAGA
CGGGACGCTCTTTGTGGCGGACACGAACAATCACCTGGTACAGAACAAGC
ACGGAGTTTTATTTATGCGGGGTTTCCAAACCGTGTACACTCGATTGCCG
TCGTGCGGTAGACCGAAGATGTTGATTACTCCTTGCGGACGAAATGATCA
GTCACGTGAGAGCACACCCTTTGATGGTCTTCAAAATTCCACACCGTGGA
CAATGGACAAACCAATAGTCCATTGCTTCAACAATATAATACAGGGCGAA
CCTATCGATAGACATTGTCGGATACAATAG
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