mRNA_L-elsbetiae_contig13124.2456.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13124.2456.1
Unique NamemRNA_L-elsbetiae_contig13124.2456.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13124.2456.1 vs. uniprot
Match: A0A6H5KKQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ5_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.680e-12
Identity = 37/63 (58.73%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 QWMAGSDLLVKPVVSEGATVASVYLPAPPPPGETEEGSS----SGTASLWYDVDTLEAVKGAG 177
            QWMAG+DLLVKPVV+EGATVA VY P         EG S    + TASLWYDV+TL+ V+  G
Sbjct:  114 QWMAGADLLVKPVVTEGATVADVYFPG------VAEGCSGTTTTSTASLWYDVETLQVVEVTG 170
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BLAST of mRNA_L-elsbetiae_contig13124.2456.1 vs. uniprot
Match: A0A7S2PVF9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PVF9_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 7.320e-5
Identity = 26/59 (44.07%), Postives = 32/59 (54.24%), Query Frame = 1 
Query:    1 QWMAGSDLLVKPVVSEGATVASVYLPAPPPPGETEEGSSSGTASLWYDVDTLEAVKGAG 177
            Q++ GSDLLVKPV S GAT + V  P                A  WYDVDT++ V+ AG
Sbjct:  922 QYLIGSDLLVKPVTSAGATTSHVLFPL---------------ADCWYDVDTMQRVELAG 965
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13124.2456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKQ5_9PHAE2.680e-1258.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2PVF9_9STRA7.320e-544.07Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13124contigL-elsbetiae_contig13124:1350..1876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size177
Cds size171
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13124.2456.1prot_L-elsbetiae_contig13124.2456.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13124 1350..1870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815493.091902-CDS-L-elsbetiae_contig13124:1349..14471622815493.091902-CDS-L-elsbetiae_contig13124:1349..1447Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13124 1350..1447 -
1691682925.4145892-CDS-L-elsbetiae_contig13124:1349..14471691682925.4145892-CDS-L-elsbetiae_contig13124:1349..1447Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13124 1350..1447 -
1622815493.1095445-CDS-L-elsbetiae_contig13124:1797..18701622815493.1095445-CDS-L-elsbetiae_contig13124:1797..1870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13124 1798..1870 -
1691682925.4244564-CDS-L-elsbetiae_contig13124:1797..18701691682925.4244564-CDS-L-elsbetiae_contig13124:1797..1870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13124 1798..1870 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815493.1197858-UTR-L-elsbetiae_contig13124:1870..18761622815493.1197858-UTR-L-elsbetiae_contig13124:1870..1876Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13124 1871..1876 -
1691682925.4332588-UTR-L-elsbetiae_contig13124:1870..18761691682925.4332588-UTR-L-elsbetiae_contig13124:1870..1876Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13124 1871..1876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13124.2456.1

>prot_L-elsbetiae_contig13124.2456.1 ID=prot_L-elsbetiae_contig13124.2456.1|Name=mRNA_L-elsbetiae_contig13124.2456.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=57bp
MAGSDLLVKPVVSEGATVASVYLPAPPPPGETEEGSSSGTASLWYDVDTL
EAVKGAG
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mRNA from alignment at L-elsbetiae_contig13124:1350..1876-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13124.2456.1 ID=mRNA_L-elsbetiae_contig13124.2456.1|Name=mRNA_L-elsbetiae_contig13124.2456.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=527bp|location=Sequence derived from alignment at L-elsbetiae_contig13124:1350..1876- (Laminarionema elsbetiae ELsaHSoW15)
CAGTGGATGGCCGGGTCAGACCTCCTGGTGAAGCCTGTCGTTAGCGAGGG
CGCTACCGTAGCCTCCGTCTACCTCCCCGGTGAGAAATTAGCGGCAATCC
GTCTTGTTGTCGAGTCTTCTCCTTGCTTTGCGTGGTGATTTTTGCTTCTT
CGAAAAACATACCGTCGACCGCGAACGGAAAGTGCGGTGCGCCCCCCCCC
CCCTCAATGGCTTGGTCGGTAAAACGGTACAGTACGGAATGCGGAGGGGT
ACCGGACGTAAGTCGTACGTACATGCATACTCCGGAGTATGATGTAAACA
TTAAAATTATGGATGGTTTATATGCTTGTGAAGGAAAGAAGCGACAACAA
CAGCAACAGCAACAGCAACAGCAACAACGAGCACAAAAAACAGAAACAAA
AAGAACAACCCACAACTTCCCCCCCCCAGCCCCCCCCCCCCCAGGTGAAA
CCGAAGAAGGGTCGAGTTCGGGCACCGCCAGCCTCTGGTACGACGTGGAC
ACCCTGGAGGCCGTGAAGGGGGCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13124:1350..1876-

>mRNA_L-elsbetiae_contig13124.2456.1 ID=mRNA_L-elsbetiae_contig13124.2456.1|Name=mRNA_L-elsbetiae_contig13124.2456.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=342bp|location=Sequence derived from alignment at L-elsbetiae_contig13124:1350..1876- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGGGTCAGACCTCCTGGTGAAGCCTGTCGTTAGCGAGGGCGCTAC
CGTAGCCTCCGTCTACCTCCCCGATGGCCGGGTCAGACCTCCTGGTGAAG
CCTGTCGTTAGCGAGGGCGCTACCGTAGCCTCCGTCTACCTCCCCGCCCC
CCCCCCCCCAGGTGAAACCGAAGAAGGGTCGAGTTCGGGCACCGCCAGCC
TCTGGTACGACGTGGACACCCTGGAGGCCGTGAAGGGGGCGGGGCCCCCC
CCCCCCCAGGTGAAACCGAAGAAGGGTCGAGTTCGGGCACCGCCAGCCTC
TGGTACGACGTGGACACCCTGGAGGCCGTGAAGGGGGCGGGG
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