mRNA_L-elsbetiae_contig1308.2432.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1308.2432.1
Unique NamemRNA_L-elsbetiae_contig1308.2432.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1308.2432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1308contigL-elsbetiae_contig1308:23483..24320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size838
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1308.2432.1prot_L-elsbetiae_contig1308.2432.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1308 23487..23918 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.4458468-UTR-L-elsbetiae_contig1308:23482..234861622815489.4458468-UTR-L-elsbetiae_contig1308:23482..23486Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1308 23483..23486 +
1691682923.2046514-UTR-L-elsbetiae_contig1308:23482..234861691682923.2046514-UTR-L-elsbetiae_contig1308:23482..23486Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1308 23483..23486 +
1622815489.4788086-UTR-L-elsbetiae_contig1308:23918..243201622815489.4788086-UTR-L-elsbetiae_contig1308:23918..24320Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1308 23919..24320 +
1691682923.2285829-UTR-L-elsbetiae_contig1308:23918..243201691682923.2285829-UTR-L-elsbetiae_contig1308:23918..24320Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1308 23919..24320 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.4625957-CDS-L-elsbetiae_contig1308:23486..239181622815489.4625957-CDS-L-elsbetiae_contig1308:23486..23918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1308 23487..23918 +
1691682923.218163-CDS-L-elsbetiae_contig1308:23486..239181691682923.218163-CDS-L-elsbetiae_contig1308:23486..23918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1308 23487..23918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1308.2432.1

>prot_L-elsbetiae_contig1308.2432.1 ID=prot_L-elsbetiae_contig1308.2432.1|Name=mRNA_L-elsbetiae_contig1308.2432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MQWKHGYERKREIYAKRRETDRNLRCKAVGAAPMRQLCLRVGEPGSSVGS
SAMLSVSLAAAAAAALPLFLFLAFRRLALDDSPCCCSRASILFVSSATAF
MSCARERKASSILLFRNPTVHSRRRSWSMAALTVSLILLRKWE*
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mRNA from alignment at L-elsbetiae_contig1308:23483..24320+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1308.2432.1 ID=mRNA_L-elsbetiae_contig1308.2432.1|Name=mRNA_L-elsbetiae_contig1308.2432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=838bp|location=Sequence derived from alignment at L-elsbetiae_contig1308:23483..24320+ (Laminarionema elsbetiae ELsaHSoW15)
GCCAATGCAATGGAAACACGGGTATGAACGTAAGAGAGAAATTTACGCAA
AAAGAAGAGAAACAGACAGAAACTTGCGGTGCAAGGCAGTGGGAGCTGCA
CCGATGCGTCAACTGTGCTTGCGCGTTGGCGAGCCGGGCTCGTCGGTGGG
GTCCTCAGCGATGTTGTCGGTGTCATTGGCGGCCGCGGCGGCGGCGGCGC
TTCCCTTGTTTCTCTTCCTGGCATTCCGACGTCTAGCCCTCGACGATTCT
CCTTGTTGCTGCTCAAGGGCGTCCATCCTTTTTGTGAGCTCTGCCACAGC
TTTTATGAGCTGCGCGAGAGAGCGGAAGGCTTCTTCCATCCTTCTTTTCA
GGAATCCCACAGTGCATTCCAGGCGTCGCAGCTGGAGTATGGCGGCATTG
ACTGTATCCTTGATCTTGTTGAGGAAGTGGGAATGATCCCCCACCAAGTT
CTGGAGATCAGAGAGTCCAGTGAAGATGCGGACTAGCCTATCGTACATCC
ACGCAGATTGAGTGGACAACTCGAGGACTCGCCTAGTCAGGCCGGGCATA
GCTCCCTCCAAGTCGAAGACACGCCGCGACACGCTTATCACGGCCCTCGC
GAGCGCTGGCAAGCCGAACTCAACCGTGCGGGTCAACGAAACCACCTTAC
GCGCCAGCGATGCCAGAGCTCGTGTCAGGGCTGGAAGGAAACTGGCCGAG
CGGGCCACAGCCGGCACACGAGCCCGTTCAACCTCCGCATCGGCCACCCG
CGTTGTGAGGGAGACCAAACCAATCGCGATGACAGCGGACACGGCCGCAA
AGACGACGAGCATGCAGGCCTGCAGAAACAGGACGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1308:23483..24320+

>mRNA_L-elsbetiae_contig1308.2432.1 ID=mRNA_L-elsbetiae_contig1308.2432.1|Name=mRNA_L-elsbetiae_contig1308.2432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig1308:23483..24320+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAATGGAAACACGGGTATGAACGTAAGAGAGAAATTTACGCAAAAAG
AAGAGAAACAGACAGAAACTTGCGGTGCAAGGCAGTGGGAGCTGCACCGA
TGCGTCAACTGTGCTTGCGCGTTGGCGAGCCGGGCTCGTCGGTGGGGTCC
TCAGCGATGTTGTCGGTGTCATTGGCGGCCGCGGCGGCGGCGGCGCTTCC
CTTGTTTCTCTTCCTGGCATTCCGACGTCTAGCCCTCGACGATTCTCCTT
GTTGCTGCTCAAGGGCGTCCATCCTTTTTGTGAGCTCTGCCACAGCTTTT
ATGAGCTGCGCGAGAGAGCGGAAGGCTTCTTCCATCCTTCTTTTCAGGAA
TCCCACAGTGCATTCCAGGCGTCGCAGCTGGAGTATGGCGGCATTGACTG
TATCCTTGATCTTGTTGAGGAAGTGGGAATGAATGCAATGGAAACACGGG
TATGAACGTAAGAGAGAAATTTACGCAAAAAGAAGAGAAACAGACAGAAA
CTTGCGGTGCAAGGCAGTGGGAGCTGCACCGATGCGTCAACTGTGCTTGC
GCGTTGGCGAGCCGGGCTCGTCGGTGGGGTCCTCAGCGATGTTGTCGGTG
TCATTGGCGGCCGCGGCGGCGGCGGCGCTTCCCTTGTTTCTCTTCCTGGC
ATTCCGACGTCTAGCCCTCGACGATTCTCCTTGTTGCTGCTCAAGGGCGT
CCATCCTTTTTGTGAGCTCTGCCACAGCTTTTATGAGCTGCGCGAGAGAG
CGGAAGGCTTCTTCCATCCTTCTTTTCAGGAATCCCACAGTGCATTCCAG
GCGTCGCAGCTGGAGTATGGCGGCATTGACTGTATCCTTGATCTTGTTGA
GGAAGTGGGAATGA
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