mRNA_L-elsbetiae_contig13030.2403.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13030.2403.1
Unique NamemRNA_L-elsbetiae_contig13030.2403.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13030.2403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13030contigL-elsbetiae_contig13030:1141..1989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size849
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13030.2403.1prot_L-elsbetiae_contig13030.2403.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13030 1217..1657 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.5065398-UTR-L-elsbetiae_contig13030:1140..12161622815486.5065398-UTR-L-elsbetiae_contig13030:1140..1216Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13030 1141..1216 +
1691682921.5056448-UTR-L-elsbetiae_contig13030:1140..12161691682921.5056448-UTR-L-elsbetiae_contig13030:1140..1216Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13030 1141..1216 +
1622815486.5364804-UTR-L-elsbetiae_contig13030:1657..19891622815486.5364804-UTR-L-elsbetiae_contig13030:1657..1989Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13030 1658..1989 +
1691682921.522897-UTR-L-elsbetiae_contig13030:1657..19891691682921.522897-UTR-L-elsbetiae_contig13030:1657..1989Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13030 1658..1989 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.5237887-CDS-L-elsbetiae_contig13030:1216..16571622815486.5237887-CDS-L-elsbetiae_contig13030:1216..1657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13030 1217..1657 +
1691682921.5145507-CDS-L-elsbetiae_contig13030:1216..16571691682921.5145507-CDS-L-elsbetiae_contig13030:1216..1657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13030 1217..1657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13030.2403.1

>prot_L-elsbetiae_contig13030.2403.1 ID=prot_L-elsbetiae_contig13030.2403.1|Name=mRNA_L-elsbetiae_contig13030.2403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
MDAAANQGCSKRATISAEGYPARRCSPDVGFPLHNVLQLNISTPQSSRPH
LPPKACCYISHNATSPKSAQTYIQELAKEGIARLLYCTAMLDDIPCSQQK
SKPLGGTVRCHTRATYVLRQEKKNHANTSVCIHVIVKSKHLCTLLV*
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mRNA from alignment at L-elsbetiae_contig13030:1141..1989+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13030.2403.1 ID=mRNA_L-elsbetiae_contig13030.2403.1|Name=mRNA_L-elsbetiae_contig13030.2403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=849bp|location=Sequence derived from alignment at L-elsbetiae_contig13030:1141..1989+ (Laminarionema elsbetiae ELsaHSoW15)
TTCGGCTTCTATAAAAGTTAGTCGTGGGTTCGAATCCCCGACGCTGACTG
GTCTAATGGTTTGATTTCGGCTTTCCATGGACGCCGCTGCCAATCAGGGT
TGTTCCAAGCGCGCGACGATCTCTGCCGAAGGTTATCCTGCGAGAAGGTG
TTCACCCGATGTAGGTTTTCCGCTACATAACGTTTTACAGCTAAATATAT
CTACACCGCAGTCCTCACGCCCACATCTCCCCCCAAAAGCGTGCTGCTAC
ATCTCACACAACGCAACATCACCAAAATCGGCCCAGACCTACATTCAAGA
GCTTGCCAAAGAGGGCATCGCGCGTTTGTTATATTGCACCGCCATGTTGG
ACGATATACCGTGCTCTCAACAAAAGTCCAAACCTCTAGGGGGCACCGTG
AGGTGCCACACGAGGGCCACTTATGTACTTCGACAAGAGAAAAAAAATCA
TGCGAATACAAGCGTATGCATCCACGTGATCGTGAAAAGTAAACATTTAT
GTACGCTCCTCGTATAAGTACGTCTTGCCACATACTTCTATCTTTCTTGA
CATGAAGTCCGATGGATGCGCTACAGGCTACAGACCATGATCCCGTGGCG
GCGAATTATTCGGACCACCAGAAGTTCAGGCAGCGAAGAGAGCGCACGCG
GCCGGACACCAACTCCGCGGCCTTTTCTCTCTCAGCACGCAACCTCTGCA
TGCTCGACCCAAGTTTCGCCAGAACATCCAAGAAGGAAGGCCTCTCGAAA
ACAACCGAGTTGTCTCGGCGACGTTGAAAACCGGTGCTCTGACGTAAAAG
CACAACAGCTCCCCAGACTATCGGCCGCGCTTCCGGATCGCCCTCCGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13030:1141..1989+

>mRNA_L-elsbetiae_contig13030.2403.1 ID=mRNA_L-elsbetiae_contig13030.2403.1|Name=mRNA_L-elsbetiae_contig13030.2403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig13030:1141..1989+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGCCGCTGCCAATCAGGGTTGTTCCAAGCGCGCGACGATCTCTGC
CGAAGGTTATCCTGCGAGAAGGTGTTCACCCGATGTAGGTTTTCCGCTAC
ATAACGTTTTACAGCTAAATATATCTACACCGCAGTCCTCACGCCCACAT
CTCCCCCCAAAAGCGTGCTGCTACATCTCACACAACGCAACATCACCAAA
ATCGGCCCAGACCTACATTCAAGAGCTTGCCAAAGAGGGCATCGCGCGTT
TGTTATATTGCACCGCCATGTTGGACGATATACCGTGCTCTCAACAAAAG
TCCAAACCTCTAGGGGGCACCGTGAGGTGCCACACGAGGGCCACTTATGT
ACTTCGACAAGAGAAAAAAAATCATGCGAATACAAGCGTATGCATCCACG
TGATCGTGAAAAGTAAACATTTATGTACGCTCCTCGTATAAATGGACGCC
GCTGCCAATCAGGGTTGTTCCAAGCGCGCGACGATCTCTGCCGAAGGTTA
TCCTGCGAGAAGGTGTTCACCCGATGTAGGTTTTCCGCTACATAACGTTT
TACAGCTAAATATATCTACACCGCAGTCCTCACGCCCACATCTCCCCCCA
AAAGCGTGCTGCTACATCTCACACAACGCAACATCACCAAAATCGGCCCA
GACCTACATTCAAGAGCTTGCCAAAGAGGGCATCGCGCGTTTGTTATATT
GCACCGCCATGTTGGACGATATACCGTGCTCTCAACAAAAGTCCAAACCT
CTAGGGGGCACCGTGAGGTGCCACACGAGGGCCACTTATGTACTTCGACA
AGAGAAAAAAAATCATGCGAATACAAGCGTATGCATCCACGTGATCGTGA
AAAGTAAACATTTATGTACGCTCCTCGTATAA
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