mRNA_L-elsbetiae_contig13005.2387.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13005.2387.1
Unique NamemRNA_L-elsbetiae_contig13005.2387.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig13005.2387.1 vs. uniprot
Match: A0A6H5K1Q5_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Q5_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.820e-28
Identity = 111/170 (65.29%), Postives = 116/170 (68.24%), Query Frame = 1 
Query:    4 AGLGAPGSLARELRRKVFALEQAVFSLEGKLRLADEARLERDGXXXXXXXXXXXXXXXXXXXXXXXXXXGQGS--------CVESPMGECSFDSFDCE--ADAXXXXXXXGDEGSGP-DG----DGGAEEIRRVDQEIEAKXXXXXXXXXXXXAYEAMKGQFEGLLGRLQ 468
            +G GA GSLARELR+KVF LEQ VFSLEG+LRLADEARLER  XXXXXXXXXXXXXXX           G G+        C  S   ECSFDSFD E            G EG GP DG    DGG EEIRRVD+EIE  XXXXXXXXXXXXAYEAMKGQFEGLLGRLQ
Sbjct:  565 SGSGAAGSLARELRKKVFDLEQTVFSLEGRLRLADEARLERRXXXXXXXXXXXXXXXXDCGLGAVVAVPGVGAGVTPRVSTCSSSAREECSFDSFDYEEAGGGGGGVSFEGREGGGPEDGEPGEDGGVEEIRRVDEEIEXXXXXXXXXXXXXXAYEAMKGQFEGLLGRLQ 734
[Close]
BLAST of mRNA_L-elsbetiae_contig13005.2387.1 vs. uniprot
Match: D8LMX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX1_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.470e-18
Identity = 75/140 (53.57%), Postives = 81/140 (57.86%), Query Frame = 1 
Query:    4 AGLGAPGSLARELRRKVFALEQAVFSLEGKLRLADEARLE-RDGXXXXXXXXXXXXXXXXXXXXXXXXXXGQGSCVES--------PMGECSFDSFDCE--ADAXXXXXXXGDEGSGPD-----GDGGAEEIRRVDQEIE 375
            +G GA GSLARELR+KVF LEQ VFSLEG+LRLADEARLE R G XXXXX                       +C  S        P  ECSFDSFD E     XXX    G EG GP+     GDGGAEEIRRVD+EIE
Sbjct:  572 SGPGAAGSLARELRKKVFELEQTVFSLEGRLRLADEARLEARGGGXXXXXGDCGLGAVVSTPSVGAGATPRVSTCSSSAGGLSTGSPTEECSFDSFDSEEAGXXXXXVSFEGREGGGPEDGEPGGDGGAEEIRRVDEEIE 711
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13005.2387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1Q5_9PHAE3.820e-2865.29Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
D8LMX1_ECTSI1.470e-1853.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13005contigL-elsbetiae_contig13005:3171..4978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue1.2e-16
Seed eggNOG ortholog2880.D8LMX1
KEGG koko:K10395
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0244@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons3
Model size469
Cds size468
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13005.2387.1prot_L-elsbetiae_contig13005.2387.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13005 3171..4977 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815484.2638173-CDS-L-elsbetiae_contig13005:3170..33871622815484.2638173-CDS-L-elsbetiae_contig13005:3170..3387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13005 3171..3387 +
1691682920.4960432-CDS-L-elsbetiae_contig13005:3170..33871691682920.4960432-CDS-L-elsbetiae_contig13005:3170..3387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13005 3171..3387 +
1622815484.276267-CDS-L-elsbetiae_contig13005:4086..42501622815484.276267-CDS-L-elsbetiae_contig13005:4086..4250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13005 4087..4250 +
1691682920.5080795-CDS-L-elsbetiae_contig13005:4086..42501691682920.5080795-CDS-L-elsbetiae_contig13005:4086..4250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13005 4087..4250 +
1622815484.2932482-CDS-L-elsbetiae_contig13005:4890..49771622815484.2932482-CDS-L-elsbetiae_contig13005:4890..4977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13005 4891..4977 +
1691682920.5158212-CDS-L-elsbetiae_contig13005:4890..49771691682920.5158212-CDS-L-elsbetiae_contig13005:4890..4977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13005 4891..4977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13005.2387.1

>prot_L-elsbetiae_contig13005.2387.1 ID=prot_L-elsbetiae_contig13005.2387.1|Name=mRNA_L-elsbetiae_contig13005.2387.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp
DAGLGAPGSLARELRRKVFALEQAVFSLEGKLRLADEARLERDGGGGTAS
TTAVAVYGGGGGQETASSSGGQGSCVESPMGECSFDSFDCEADAGAGEGE
GGDEGSGPDGDGGAEEIRRVDQEIEAKERELQMKARQAQAYEAMKGQFEG
LLGRLQ
back to top

mRNA from alignment at L-elsbetiae_contig13005:3171..4978+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13005.2387.1 ID=mRNA_L-elsbetiae_contig13005.2387.1|Name=mRNA_L-elsbetiae_contig13005.2387.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1808bp|location=Sequence derived from alignment at L-elsbetiae_contig13005:3171..4978+ (Laminarionema elsbetiae ELsaHSoW15)
GACGCAGGGCTCGGGGCCCCGGGGTCGCTTGCGAGGGAGCTGCGGCGGAA
GGTGTTCGCTCTGGAGCAGGCGGTGTTCTCGCTGGAGGGCAAGCTCCGGC
TGGCGGACGAGGCGAGGCTTGAGCGTGACGGCGGCGGTGGCACCGCCTCC
ACTACGGCCGTGGCGGTGTACGGCGGCGGCGGCGGCCAAGAAACGGCATC
ATCGTCTGGTGGACAGGGTGAGAAAGAAAAAGAAGACACGCTCGAGCGGA
GCGGAATGGAACGGAGCCGGCGATGCTTGCCCCGAGTACTGATGCCACTG
CTGTTTGTGCTGCTGTTTGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCTGCCGCCGCCTCTTG
GTTTTCTCCCCCATGTCATCTATGCCATTGTGCTCTTATTTCTGTTGCCG
TTTAGAGCCCGCAGGGAACGTCGGGAAAAGGGGGGAAAAAAACGTGTACA
TACGATATACTTCGAAGTACTTAATTAAATGGTCCTCTAAATATGCCCAG
CAATGCCTTCCCTATGTACATTGGCTGTGATTTTTTTTTTTTCTTTTCTT
CTCTTCTTGACATCTATTTCCAGTGCTCACGAGGACATCTTGTCACACAG
AAGACTTTGAGCGATATCAAATGGTTAATGCTGCTCGCTCTCTGGGGCAC
TCGCTTGTCGTGTTTGGACACCGGCTATCTAGAGTCGGGTTGTTAAAACT
CCTTTTGAGGAACCTGCATTTTTTTGTGCTTTGTATACATATGTACACTG
GGAAAAAAATAAATAAATATATATATATTATATATACGTACATAACATGT
CACGTATTTCCATCGCTCGTCGTTTGACGTCCTCGTCTTGCCCGCGAACA
ATAATTGGAAAACTAGGCTCATGTGTGGAGTCTCCGATGGGCGAGTGCTC
ATTCGACTCCTTCGATTGCGAGGCGGACGCTGGAGCAGGGGAAGGAGAAG
GTGGCGACGAGGGCAGCGGCCCCGACGGCGACGGCGGCGCGGAAGAGATT
CGGCGGGTGGACCAGGAGATCGAGGCCAAGGTGCGGCGGAGCGATGGGCA
GATTGTGGACATGCCTTTTATTTTGAAAGATAAAACAGTTAATCAAATGT
GGTACCTAACCCACATTGAGACGCGACTCCCGTGAGATTCAGACGGTATC
CAACAGTGACGTATTATTGGGCCGGCCGAGTACTAGAAAAACACCTAAAA
TAAAAGATTATTTTATTTTATTGTTGTCTCTAAATTTTATTTCTTAGAGC
ATATCTACGTCGTCACCTCCGTAGAAGATGCTGTTGACAAAAAAAAAAAA
TGTGGTGCGCTTTGTGCAAGGCAGATGCGGTATTGATGCGACGGCAGATG
GATGATGATGCTTGCTCTCTGTTAAAGTTGTTCTTGGTGCGCTCGCTCGA
ACACGGTATGGACGCTACGTACGTGACTGCCTTCCTCAAAGAACTTTCAA
GTCACGGGGGTCGAATTTGTATTTTTTTTTTACCCCCGCTCGCGCAGATG
CGCAGCCTCGCCACCTCATCTGAAACGGCAGTTCACAAGCGAAAGCGCGC
GGCCCTTTATGGCGCATTATTCTCGTCGGTGTTTTTTGAACGCTTTGACT
TACGTATTTCCTGCGTTTGTGCCCCCGTGGTGGTTTTACCTATACCTGCT
GTGCTGCCCGGCACCACCAGGAGCGCGAGCTCCAGATGAAGGCGCGGCAG
GCGCAAGCGTACGAAGCCATGAAGGGGCAGTTCGAGGGGCTGCTAGGCCG
GCTGCAGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13005:3171..4978+

>mRNA_L-elsbetiae_contig13005.2387.1 ID=mRNA_L-elsbetiae_contig13005.2387.1|Name=mRNA_L-elsbetiae_contig13005.2387.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig13005:3171..4978+ (Laminarionema elsbetiae ELsaHSoW15)
GACGCAGGGCTCGGGGCCCCGGGGTCGCTTGCGAGGGAGCTGCGGCGGAA
GGTGTTCGCTCTGGAGCAGGCGGTGTTCTCGCTGGAGGGCAAGCTCCGGC
TGGCGGACGAGGCGAGGCTTGAGCGTGACGGCGGCGGTGGCACCGCCTCC
ACTACGGCCGTGGCGGTGTACGGCGGCGGCGGCGGCCAAGAAACGGCATC
ATCGTCTGGTGGACAGGGACGCAGGGCTCGGGGCCCCGGGGTCGCTTGCG
AGGGAGCTGCGGCGGAAGGTGTTCGCTCTGGAGCAGGCGGTGTTCTCGCT
GGAGGGCAAGCTCCGGCTGGCGGACGAGGCGAGGCTTGAGCGTGACGGCG
GCGGTGGCACCGCCTCCACTACGGCCGTGGCGGTGTACGGCGGCGGCGGC
GGCCAAGAAACGGCATCATCGTCTGGTGGACAGGGCTCATGTGTGGAGTC
TCCGATGGGCGAGTGCTCATTCGACTCCTTCGATTGCGAGGCGGACGCTG
GAGCAGGGGAAGGAGAAGGTGGCGACGAGGGCAGCGGCCCCGACGGCGAC
GGCGGCGCGGAAGAGATTCGGCGGGTGGACCAGGAGATCGAGGCCAAGGC
TCATGTGTGGAGTCTCCGATGGGCGAGTGCTCATTCGACTCCTTCGATTG
CGAGGCGGACGCTGGAGCAGGGGAAGGAGAAGGTGGCGACGAGGGCAGCG
GCCCCGACGGCGACGGCGGCGCGGAAGAGATTCGGCGGGTGGACCAGGAG
ATCGAGGCCAAGGAGCGCGAGCTCCAGATGAAGGCGCGGCAGGCGCAAGC
GTACGAAGCCATGAAGGGGCAGTTCGAGGGGCTGCTAGGCCGGCTGCAGG
AGCGCGAGCTCCAGATGAAGGCGCGGCAGGCGCAAGCGTACGAAGCCATG
AAGGGGCAGTTCGAGGGGCTGCTAGGCCGGCTGCAG
back to top