prot_L-elsbetiae_contig13.2375.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig13.2375.1
Unique Nameprot_L-elsbetiae_contig13.2375.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length241
Homology
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BLAST of mRNA_L-elsbetiae_contig13.2375.1 vs. uniprot
Match: A0A6H5JRD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD4_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 3.800e-27
Identity = 53/105 (50.48%), Postives = 67/105 (63.81%), Query Frame = 0 
Query:    3 AATCTSVVVSGTGLSSGTYRQVALSSLYDEGYYRAGGVDYYWMFKYNDAWYIEPQLASYPVYRTYDDATHPADVSLEWTLCDIEFCDHTPAPAPPTIVCAGELLT 107
            AATCT++ VS  G  SGTYR+VA +S Y+E +Y AGG DYY+++  N AWYI P +  YP YRTYDDA HPAD++  W  CD  +CD+        I CA    T
Sbjct:  126 AATCTNIAVSDLGSYSGTYREVAGTSSYEELFYMAGGTDYYYVYLSNSAWYISPNVVDYPKYRTYDDAAHPADITQSWAECDNVYCDYVEVATSMAITCAAATCT 230
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BLAST of mRNA_L-elsbetiae_contig13.2375.1 vs. uniprot
Match: D8LB13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB13_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.380e-26
Identity = 58/108 (53.70%), Postives = 71/108 (65.74%), Query Frame = 0 
Query:    3 AATCTSVVVSGTGLSSGTYRQVALSSLYDEGYYRAGGVDYYWMFKYNDAWYIEPQLASYPVYRTYDDATHPADVSLEWTLCDIEFCD-HTPAPAPPTIVCAGELLTPA 109
            AATCTS+ +SG G  SGTYR++A +S YDE YY AGG DYY+++  N AWYI P +  YP YRTYDDA HPAD++L W  CD   CD   PA A   + CA  +   A
Sbjct:  326 AATCTSIAISGLGDFSGTYREIAGTSSYDELYYMAGGTDYYYVYLSNSAWYISPNVVDYPKYRTYDDAGHPADITLGWAECDNASCDWDEPATASFNVTCADTVTATA 433
[Close]
BLAST of mRNA_L-elsbetiae_contig13.2375.1 vs. uniprot
Match: A0A6H5JUT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT7_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 4.670e-22
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 0 
Query:    1 MRAATCTSVVVSGTGLSSGTYRQVALSSLYDEGYYRAGGVDYYWMFKYNDAWYIEPQLASYPVYRTYDDATHPADVSLEWTLCDIEFCDHT-PAPAPPTIVCAG 103
            +R ATCT VV+S  G  SGTY +VA +S YD+ Y  A GV+ Y ++  N AW ++P  A YP YRTYDDA++PAD++LEW  CD  +CD   P+P+P  I C+G
Sbjct:   80 VRPATCTKVVLSDFGDFSGTYAEVADTS-YDKQYSMAAGVETYSIYLDNGAWNMQPIEAVYPRYRTYDDASNPADITLEWVECDNSYCDFDIPSPSPIVITCSG 182
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13.2375.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JRD4_9PHAE3.800e-2750.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB13_ECTSI1.380e-2653.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUT7_9PHAE4.670e-2250.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 234..241
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 210..233
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..209
NoneNo IPR availableTMHMMTMhelixcoord: 211..233

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13contigL-elsbetiae_contig13:65017..69072 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13.2375.1mRNA_L-elsbetiae_contig13.2375.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig13 65017..69072 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig13.2375.1 ID=prot_L-elsbetiae_contig13.2375.1|Name=mRNA_L-elsbetiae_contig13.2375.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=241bp
MRAATCTSVVVSGTGLSSGTYRQVALSSLYDEGYYRAGGVDYYWMFKYND
AWYIEPQLASYPVYRTYDDATHPADVSLEWTLCDIEFCDHTPAPAPPTIV
CAGELLTPAPSQPPLPRPRSFFPPDGSPLSTPAPNSVTSGTDDLTTDAPS
PVDSRAIGDDSETIQPSSGDREIGDSETIQPSSGDSNEDLEAEGLPTDGD
DGGEEGGLSVGAIVGIIAGALVVIAGGGFAFAFKENDIHCC
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