mRNA_L-elsbetiae_contig12976.2352.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12976.2352.1
Unique NamemRNA_L-elsbetiae_contig12976.2352.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12976.2352.1 vs. uniprot
Match: A0A6H5JD07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD07_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 9.560e-28
Identity = 65/125 (52.00%), Postives = 84/125 (67.20%), Query Frame = 1 
Query:    7 YWTFWGVLF-GTILTWVFAVSAAADDAWLSVNGVKMVSFEGDCLSEALDD--DGDEACSLYTAAKAFQIMGTLIISFVLVVVAVAAFMQAPITGKLGLAAGIVLAVFSVFQLLAFALMAAFADKR 372
            YW +W VLF  TI TW+FAV+AAADDAW++           D     L +  DG + C LY AA AFQ + T+++S VLV+V VAAF  AP+TGKLGLA GI+L VF+VF+LLAF   AA+ ++R
Sbjct:    6 YWGYWIVLFVTTIFTWIFAVAAAADDAWIA-----------DAYEAGLGESCDGYDFCGLYKAATAFQYLATIVVSVVLVMVVVAAFTPAPVTGKLGLAVGIMLFVFAVFELLAFCTYAAYIEER 119
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BLAST of mRNA_L-elsbetiae_contig12976.2352.1 vs. uniprot
Match: D7FWH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWH1_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.120e-21
Identity = 58/131 (44.27%), Postives = 76/131 (58.02%), Query Frame = 1 
Query:    1 QVYWTFWGVLFGTILTWVFAVSAAADDAWLSVNGVKMVSFEGDCLSEALDDDGDEACSLYTAAKAFQIMGTLIISFVLVVVAVAAFMQAPITGKLGLAAGIVLAVFSVFQLLAFALMAAFADK--RKTDTY 387
            +V+  +W V F T +TW+FAV+AA+DDAWL   G  ++     C   A        C  Y    AFQ    ++IS  +VV+ VAAF  AP TG+LG AAG +L VFSV QL AF++MAA A +  R  D Y
Sbjct:   44 KVFLVYWAVCFATAITWLFAVAAASDDAWLQFEGYPLLKLGERCEFSA------SFCDYYKTGTAFQFFAAIVISATVVVMIVAAFKPAPATGRLGAAAGTMLLVFSVLQLAAFSIMAASAGRLNRDNDNY 168
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12976.2352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JD07_9PHAE9.560e-2852.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWH1_ECTSI1.120e-2144.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12976contigL-elsbetiae_contig12976:151..2144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_006660.1
Exons2
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815478.002196-CDS-L-elsbetiae_contig12976:150..3591622815478.002196-CDS-L-elsbetiae_contig12976:150..359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12976 151..359 -
1691682917.410869-CDS-L-elsbetiae_contig12976:150..3591691682917.410869-CDS-L-elsbetiae_contig12976:150..359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12976 151..359 -
1622815478.011841-CDS-L-elsbetiae_contig12976:1966..21441622815478.011841-CDS-L-elsbetiae_contig12976:1966..2144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12976 1967..2144 -
1691682917.4196432-CDS-L-elsbetiae_contig12976:1966..21441691682917.4196432-CDS-L-elsbetiae_contig12976:1966..2144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12976 1967..2144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12976.2352.1prot_L-elsbetiae_contig12976.2352.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12976 151..2144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12976.2352.1

>prot_L-elsbetiae_contig12976.2352.1 ID=prot_L-elsbetiae_contig12976.2352.1|Name=mRNA_L-elsbetiae_contig12976.2352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
QVYWTFWGVLFGTILTWVFAVSAAADDAWLSVNGVKMVSFEGDCLSEALD
DDGDEACSLYTAAKAFQIMGTLIISFVLVVVAVAAFMQAPITGKLGLAAG
IVLAVFSVFQLLAFALMAAFADKRKTDTY
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mRNA from alignment at L-elsbetiae_contig12976:151..2144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12976.2352.1 ID=mRNA_L-elsbetiae_contig12976.2352.1|Name=mRNA_L-elsbetiae_contig12976.2352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1994bp|location=Sequence derived from alignment at L-elsbetiae_contig12976:151..2144- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGTACTGGACTTTCTGGGGTGTCCTTTTCGGAACCATCCTCACCTG
GGTGTTCGCCGTTTCCGCGGCAGCGGATGATGCCTGGCTCAGTGTCAACG
GCGTCAAGATGGTCAGCTTCGAAGGAGACTGCTTGAGTGAAGCTTTGGAC
GACGACGGTGACGAGGCCTGCAGCTTGTGTGAGTGTCACACGTACACGTA
CGAAGTGTAGTAGTAGTCGAAGGGTATACCGCCGTGTAGTAGGATAAGTA
GGGTTAGCGGGGGCGTTTCCCGCACGACCCGTGTTCATATAACCGCGGCA
TATCGTGTGTAAAAGTTGTGTTTTCAGACAGACCCAAGCGGCTGCTCCAT
GAGGTGTCCGGCTGGGTTAGCGTGAGTCGTCCTTCCGACCACTCGTCGAG
GTGCTCTATGAGGTGTTCGGCTGGCGAAAGGCTGTTGCCCAGGACACATG
TAGACATGGATCCATTCCATCTCGAAGCACCCCTGTCTACAGTATCCTGG
TATTTTCTATGTTTTTGTCAGCCTATTGCATAAATAAATAGAGTGTTTGC
GATTTGCTCCGCTAATTAAAGAGCCGACCCAAACAGTCGTATCTGTTTCA
AGAGCCCACGGGATTTGCTCGGCGAAAAAGCTGTGTTTTGCGGAGAGTAT
TTGGCTATTTAAACACACACGCAGTCCTGAATGCTGGAGACCGGAGATGG
TACCGACTCGGCAACAGATATACTAGAAGATACTAGAAGAAGTGTGGCCG
CTCGATTCGCCTCGCGCGTGTGAGCTTGCGATATGCCATCATTGGGATTA
AGGTGTCTTCGTTGTCATACATAATATTTCAACACGTTGACCGCCGCCAA
CCTGTGACCACGGGAACTGACCGCATCAAGTGTTGGAATAGTATGCCCAT
AGGGAGGTACTGTTGAGTGGAGAGATTAGAACGGCTTTTAATGTGAAGAA
ACAACAACAAGCGCAACAACAGACGCCTCGCCAGCGTCCATGCCTGCTGC
ACACTGGTGCACGCATAGTTGCCGAATAGTCTTTCTGCGCCCGGACATGC
CCTCCGTACTACTGCTGTGGGGTAAGCGGGGAGAAAAGAGAGAGTCAGAA
GAAAAAAAGAGAGAATCAGGGGCACACAACTTGCCGTCCAGAAATTCCGA
GATACCTCTGGTGGTACGATGATTACTCCGGAGAGGGATTGTCACTGGTT
GTAGTGCGTTAAAGAGGCGAATTGTGGTAGAGGAGCATTATCACTGTTTT
TGCTATCATCCTAGCTCACGACCAGTGACGCTAAATTAACGGAGCAAATC
ACGCACCGGAGTAACCTTCAAAAAGGTCTACTAAAGTTTTTCCGTCCTAA
CGCAAACACTCTAATGATGGGTTTGTTGCAAGAAACTTGTTGACAACGGG
TGGCAGGGCTGGAAATTTCCTTGGAATTTAAATTTCCACGACCGTGCGTG
GTGTTCCTGGTACATATGTATCCCGCCGAGTGGTGAACAGTAGGCCGAGC
GAGCGTTTCGCAGCGCAGTTATGATTGCGTTGTTACCAGATATTTTTTTC
CGGAGAGACGAGAGAGATCTCGAGCGGAAGGCGTTGCTAATTATGTAGGT
ATGTGGCAGCAGATCTCGGATGACGGCTATCTTGATCTTTGCTTCTTTGG
CGTTGGGGCTCTATTTCGTTTCTATGTAGACTAGTCTACACATCACCCTG
TTGACTCAAGGGTTACATGATTGTCTGACGGATCGCCGTCCTTTCTTATT
CCCGTGAACCCGTGAACCCGATTTTTTAACCGCAGACACCGCAGCAAAGG
CGTTCCAGATCATGGGTACCCTTATCATCAGTTTCGTTCTCGTCGTGGTC
GCCGTCGCGGCTTTCATGCAAGCTCCCATCACTGGAAAGCTTGGGCTCGC
CGCGGGAATCGTGCTGGCGGTATTCTCTGTGTTTCAGCTCCTTGCCTTCG
CCCTGATGGCCGCGTTCGCCGACAAACGTAAGACGGATACATAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12976:151..2144-

>mRNA_L-elsbetiae_contig12976.2352.1 ID=mRNA_L-elsbetiae_contig12976.2352.1|Name=mRNA_L-elsbetiae_contig12976.2352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig12976:151..2144- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGTACTGGACTTTCTGGGGTGTCCTTTTCGGAACCATCCTCACCTG
GGTGTTCGCCGTTTCCGCGGCAGCGGATGATGCCTGGCTCAGTGTCAACG
GCGTCAAGATGGTCAGCTTCGAAGGAGACTGCTTGAGTGAAGCTTTGGAC
GACGACGGTGACGAGGCCTGCAGCTTGTCAGGTGTACTGGACTTTCTGGG
GTGTCCTTTTCGGAACCATCCTCACCTGGGTGTTCGCCGTTTCCGCGGCA
GCGGATGATGCCTGGCTCAGTGTCAACGGCGTCAAGATGGTCAGCTTCGA
AGGAGACTGCTTGAGTGAAGCTTTGGACGACGACGGTGACGAGGCCTGCA
GCTTGTACACCGCAGCAAAGGCGTTCCAGATCATGGGTACCCTTATCATC
AGTTTCGTTCTCGTCGTGGTCGCCGTCGCGGCTTTCATGCAAGCTCCCAT
CACTGGAAAGCTTGGGCTCGCCGCGGGAATCGTGCTGGCGGTATTCTCTG
TGTTTCAGCTCCTTGCCTTCGCCCTGATGGCCGCGTTCGCCGACAAACGT
AAGACGGATACATATACACCGCAGCAAAGGCGTTCCAGATCATGGGTACC
CTTATCATCAGTTTCGTTCTCGTCGTGGTCGCCGTCGCGGCTTTCATGCA
AGCTCCCATCACTGGAAAGCTTGGGCTCGCCGCGGGAATCGTGCTGGCGG
TATTCTCTGTGTTTCAGCTCCTTGCCTTCGCCCTGATGGCCGCGTTCGCC
GACAAACGTAAGACGGATACATAT
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