mRNA_L-elsbetiae_contig1277.2222.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1277.2222.1
Unique NamemRNA_L-elsbetiae_contig1277.2222.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1277.2222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1277contigL-elsbetiae_contig1277:2121..2531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815464.3360085-CDS-L-elsbetiae_contig1277:2120..24231622815464.3360085-CDS-L-elsbetiae_contig1277:2120..2423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1277 2121..2423 +
1691682910.4743514-CDS-L-elsbetiae_contig1277:2120..24231691682910.4743514-CDS-L-elsbetiae_contig1277:2120..2423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1277 2121..2423 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815464.3463607-UTR-L-elsbetiae_contig1277:2423..25311622815464.3463607-UTR-L-elsbetiae_contig1277:2423..2531Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1277 2424..2531 +
1691682910.4830484-UTR-L-elsbetiae_contig1277:2423..25311691682910.4830484-UTR-L-elsbetiae_contig1277:2423..2531Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1277 2424..2531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1277.2222.1prot_L-elsbetiae_contig1277.2222.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1277 2121..2423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1277.2222.1

>prot_L-elsbetiae_contig1277.2222.1 ID=prot_L-elsbetiae_contig1277.2222.1|Name=mRNA_L-elsbetiae_contig1277.2222.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
VRDRGGDVVGELSKGRGDDGEGGEGRRRRDGSPFVGNEGSEPSATAAAAA
ASAAAAAAAVAEARGDQSAEDSSPLSKRRNSRRQQSDGSDVVTSQPTGEW
*
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mRNA from alignment at L-elsbetiae_contig1277:2121..2531+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1277.2222.1 ID=mRNA_L-elsbetiae_contig1277.2222.1|Name=mRNA_L-elsbetiae_contig1277.2222.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=411bp|location=Sequence derived from alignment at L-elsbetiae_contig1277:2121..2531+ (Laminarionema elsbetiae ELsaHSoW15)
GTGAGAGACAGAGGGGGCGACGTGGTGGGAGAGTTGAGCAAGGGTAGGGG
TGACGACGGCGAGGGAGGCGAGGGACGGAGGAGAAGAGACGGCTCTCCTT
TCGTTGGCAACGAGGGCTCGGAACCTTCCGCTACTGCTGCTGCTGCTGCT
GCTTCGGCGGCGGCCGCGGCCGCGGCCGTGGCAGAGGCCAGGGGAGACCA
AAGCGCCGAGGATAGCTCGCCTTTGTCCAAGCGGCGGAACTCTCGGCGGC
AGCAGTCCGATGGTAGCGATGTTGTTACCTCCCAGCCTACGGGCGAGTGG
TGACCGATAGAACAGCTTGTAGAAGAGGGCACGTAGACACAGAAGATTTT
GCTTGTGGTGGGGTCGGTCGGGGTGTTTTTTTTGGTTGGGTGGGTGGTTT
TTGTTCGCGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1277:2121..2531+

>mRNA_L-elsbetiae_contig1277.2222.1 ID=mRNA_L-elsbetiae_contig1277.2222.1|Name=mRNA_L-elsbetiae_contig1277.2222.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig1277:2121..2531+ (Laminarionema elsbetiae ELsaHSoW15)
GTGAGAGACAGAGGGGGCGACGTGGTGGGAGAGTTGAGCAAGGGTAGGGG
TGACGACGGCGAGGGAGGCGAGGGACGGAGGAGAAGAGACGGCTCTCCTT
TCGTTGGCAACGAGGGCTCGGAACCTTCCGCTACTGCTGCTGCTGCTGCT
GCTTCGGCGGCGGCCGCGGCCGCGGCCGTGGCAGAGGCCAGGGGAGACCA
AAGCGCCGAGGATAGCTCGCCTTTGTCCAAGCGGCGGAACTCTCGGCGGC
AGCAGTCCGATGGTAGCGATGTTGTTACCTCCCAGCCTACGGGCGAGTGG
TGAGTGAGAGACAGAGGGGGCGACGTGGTGGGAGAGTTGAGCAAGGGTAG
GGGTGACGACGGCGAGGGAGGCGAGGGACGGAGGAGAAGAGACGGCTCTC
CTTTCGTTGGCAACGAGGGCTCGGAACCTTCCGCTACTGCTGCTGCTGCT
GCTGCTTCGGCGGCGGCCGCGGCCGCGGCCGTGGCAGAGGCCAGGGGAGA
CCAAAGCGCCGAGGATAGCTCGCCTTTGTCCAAGCGGCGGAACTCTCGGC
GGCAGCAGTCCGATGGTAGCGATGTTGTTACCTCCCAGCCTACGGGCGAG
TGGTGA
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