mRNA_L-elsbetiae_contig12759.2215.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12759.2215.1
Unique NamemRNA_L-elsbetiae_contig12759.2215.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12759.2215.1 vs. uniprot
Match: D8LQA2_ECTSI (Cationic amino acid transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQA2_ECTSI)

HSP 1 Score: 407 bits (1046), Expect = 6.480e-136
Identity = 211/255 (82.75%), Postives = 225/255 (88.24%), Query Frame = 1
Query:    1 AGPAGIVSWLLAGIGCVFSGLSYAELSSIIPSEGGTYAYAFVALGELPAIITAWCLTLEFGISGAAVARVWADKVSEWVALGGGTGSTEMHRFWMFALDPFPQVFGGISPLAGLLQAACVLVLLRGVEMGKRVTTVMTAIKMAVCAFIIVGGLMLFQPDNLVPFAPMGVSGVIRGSSAAFFGYLGYDEVCALAGESINPRKDVPLAIAYILLIVSVTYVLSALALSGMVPADGSPDGSSFVLAFAARGWGWACQV 765
            AGPA +VSW+LAGIGCVFSGLSYAELSSIIPSEGGTYAYAFVALGELPAI+TAWCLTLEFGISGAAVAR WADK+ EWV LG  T S      W++ LDPFP +  GISPLAGLLQAACV+VLLRGVEM KRVTTVMTAIKMAVC FIIVGGL LF P N++PFAPMGV+GVIRGSSAAFFGYLGYDEVCALAGESINPR+DVPLAIAY L IV+ TYVLSALALSGMVP DGS   SSFVLAFAARGW WACQ+
Sbjct:   80 AGPAAVVSWVLAGIGCVFSGLSYAELSSIIPSEGGTYAYAFVALGELPAIVTAWCLTLEFGISGAAVARAWADKIVEWVTLGAKTESR-----WIWLLDPFPGL--GISPLAGLLQAACVVVLLRGVEMSKRVTTVMTAIKMAVCIFIIVGGLALFDPGNMLPFAPMGVAGVIRGSSAAFFGYLGYDEVCALAGESINPRRDVPLAIAYTLAIVAATYVLSALALSGMVPVDGSAASSSFVLAFAARGWHWACQI 327          
BLAST of mRNA_L-elsbetiae_contig12759.2215.1 vs. uniprot
Match: A0A7R9UE61_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE61_9STRA)

HSP 1 Score: 225 bits (573), Expect = 1.740e-66
Identity = 119/255 (46.67%), Postives = 160/255 (62.75%), Query Frame = 1
Query:    1 AGPAGIVSWLLAGIGCVFSGLSYAELSSIIPSEGGTYAYAFVALGELPAIITAWCLTLEFGISGAAVARVWADKVSEWVALG---GGTGSTEMHRFWMFALDPFPQVFGGISPLAGLLQAACVLVLLRGVEMGKRVTTVMTAIKMAVCAFIIVGGLMLFQPDNLVPFAPMGVSGVIRGSSAAFFGYLGYDEVCALAGESINPRKDVPLAIAYILLIVSVTYVLSALALSGMVPADGSPDGSSFVLAFAARGWGWA 756
            AGPA ++SWL AG GCV SG++YAE+SS +PS G +YAY +VALGELPA++  WCLTLE+GIS +A+AR W DK+  W+       G G    H               G++PLA  +   C  +LL GV +GK VT   T +KM + AF+I+GGL LF  DNL PFAP G  G++RG+++AFFGY+GYD VC L  E+ NP +++PLA+   ++ V+V   L+A AL  M P +     S F  AF + G  WA
Sbjct:   82 AGPAVVLSWLTAGFGCVLSGMNYAEMSSRVPSAGSSYAYTYVALGELPAVVAGWCLTLEYGISASAIARSWGDKMINWITTDLDLDGKGLRPGH---------------GVNPLAAAMVMTCTGILLGGVGVGKNVTNFFTGLKMLLVAFMIIGGLSLFDADNLTPFAPNGFPGIMRGATSAFFGYIGYDTVCCLGMEAKNPSRNLPLAVGGSIVGVTVLQCLAAFALVSMQPFEDIDVDSGFPEAFGSNGLVWA 321          
BLAST of mRNA_L-elsbetiae_contig12759.2215.1 vs. uniprot
Match: A0A7S2PKQ0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PKQ0_9STRA)

HSP 1 Score: 222 bits (565), Expect = 1.460e-65
Identity = 120/260 (46.15%), Postives = 170/260 (65.38%), Query Frame = 1
Query:    1 AGPAGIVSWLLAGIGCVFSGLSYAELSSIIPSEGGTYAYAFVALGELPAIITAWCLTLEFGISGAAVARVWADKVSEWVALG---GGTGSTEMHRFWMFALDPFPQVFGGISPLAGLLQAACVLVLLRGVEMGKRVTTVMTAIKMAVCAFIIVGGLMLFQPDNLVPFAP--MGVSGVIRGSSAAFFGYLGYDEVCALAGESINPRKDVPLAIAYILLIVSVTYVLSALALSGMVPADGSPDGSSFVLAFAARGWGWACQV 765
            AGPA  +SWL+AGI  + SG  YAEL+  IP+ G +YAYA++++GELPA+I A CLTLE+ +S AAVAR W DKV EW+         GS     F +  LDP       ++P+A L+ AA   +LL GV+  K VT   T++K+ +  F+ +GGL+L +P NL PF P  +G++GV RG++++FFGY+GYDEVC LAGE+INPR ++P AI  ++ +++  Y+ +AL L+GM P     + S F  AF A G  WA Q+
Sbjct:   19 AGPATCLSWLIAGIASILSGACYAELAGRIPASGSSYAYAYISMGELPAVIAAACLTLEYLVSSAAVARSWGDKVVEWLVSDIHLDADGSDSTSSFVLSILDPGYA----LNPMAFLVSAASTALLLSGVKESKSVTNFFTSVKVILVVFMGLGGLVLLKPANLKPFIPPELGIAGVFRGATSSFFGYIGYDEVCCLAGEAINPRVNLPRAIMIVITLITALYIFAALMLTGMEPYYEISETSGFPEAFRANGVNWAAQL 274          
BLAST of mRNA_L-elsbetiae_contig12759.2215.1 vs. uniprot
Match: A0A8J9S9B2_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S9B2_PHATR)

HSP 1 Score: 211 bits (536), Expect = 5.070e-63
Identity = 117/256 (45.70%), Postives = 162/256 (63.28%), Query Frame = 1
Query:    1 AGPAGIVSWLLAGIGCVFSGLSYAELSSIIPSEGGTYAYAFVALGELPAIITAWCLTLEFGISGAAVARVWADKVSEWVALGGGTGSTEMHRFWMFALDPFPQVFGGISPLAGLLQAACVLVLLRGVEMGKRVTTVMTAIKMAVCAFIIVGGLMLFQPDNL-VPFAPMGVSGVIRGSSAAFFGYLGYDEVCALAGESINPRKDVPLAIAYILLIVSVTYVLSALALSGMVPADGSPDGSSFVLAFAARGWGWACQV 765
            AGP   +S+ +AGI    SG+ YAELS+ IP+ G TY YA+V LGE+ A++ A CLTLE+G++GAAVAR W DKV  W+    G         W            G++  A ++     L+LL GV+  K V+ V+T++KMA+ AF+ +GG +L+Q  N+  P AP GV GV+RG++ +FFGYLGYDEVC +AGE+++P +D+P A+   + IV+V YVLSALAL+GMV        S F  AFA R   WA Q+
Sbjct:   35 AGPLTFLSFAIAGIAACCSGVCYAELSARIPAAGSTYVYAYVCLGEVAAVVAAACLTLEYGVAGAAVARSWGDKVVLWMQTSFGVSVASWMMPW------------GVNLPAAVVSLGSTLLLLAGVQESKNVSNVITSLKMAIVAFMTIGGFILYQKVNMQAPLAPFGVDGVLRGATTSFFGYLGYDEVCVVAGEALHPARDMPRAVLGTISIVTVFYVLSALALTGMVHYSDISPTSGFPEAFATRHVMWASQL 278          
BLAST of mRNA_L-elsbetiae_contig12759.2215.1 vs. uniprot
Match: A0A7S4V2K1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V2K1_9STRA)

HSP 1 Score: 214 bits (544), Expect = 4.510e-62
Identity = 117/258 (45.35%), Postives = 157/258 (60.85%), Query Frame = 1
Query:    1 AGPAGIVSWLLAGIGCVFSGLSYAELSSIIPS-EGGTYAYAFVALGELPAIITAWCLTLEFGISGAAVARVWADKVSEWVALGGGTGSTEMHRFWMFALDPFPQVFGGISPLAGLLQAACVLVLLRGVEMGKRVTTVMTAIKMAVCAFIIVGGLMLFQPDNLVPFAP--MGVSGVIRGSSAAFFGYLGYDEVCALAGESINPRKDVPLAIAYILLIVSVTYVLSALALSGMVPADGSPDGSSFVLAFAARGWGWACQV 765
            AGPA  +SW+++G     SGL YAE+S   P+ EG +Y Y    +GE   ++   CLTLE+G+SGAAVAR W DK + W+    G  +  M   W    D    VF      A L+    V +L  GV+  K+VT VMTA+K+ +  F+IV GL L    NL PF P  +G++GV RG++++FFGYLGYDEVC +AGE+INPR+D+P A+ Y L I+SV YV++A  L GM P +     S F  AF   GWGWA Q+
Sbjct:  117 AGPATCLSWIISGFAACLSGLCYAEMSCAFPAQEGSSYVYTKHTMGEWFGVMAGACLTLEYGMSGAAVARSWGDKAARWLHTDLGVDNNSMGWTWFLTSDLGSDVF------ACLISVVTVALLAGGVKESKQVTNVMTALKIVLVVFMIVAGLFLMDTSNLTPFVPPELGMAGVARGATSSFFGYLGYDEVCCVAGEAINPRRDIPRAVLYTLSILSVLYVVAAFVLVGMQPWEEISAESGFPEAFRYNGWGWAAQI 368          
BLAST of mRNA_L-elsbetiae_contig12759.2215.1 vs. uniprot
Match: A0A7S2IG81_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IG81_9STRA)

HSP 1 Score: 214 bits (546), Expect = 3.010e-61
Identity = 119/263 (45.25%), Postives = 172/263 (65.40%), Query Frame = 1
Query:    1 AGPAGIVSWLLAGIGCVFSGLSYAELSSIIPSEGGTYAYAFVALGELPAIITAWCLTLEFGISGAAVARVWADKVSEWV-----ALGGGTGSTEMHRFWMFA-LDPFPQVFGGISPLAGLLQAACVLVLLRGVEMGKRVTTVMTAIKMAVCAFIIVGGLMLFQPDNLVPFAP--MGVSGVIRGSSAAFFGYLGYDEVCALAGESINPRKDVPLAIAYILLIVSVTYVLSALALSGMVPADGSPDGSSFVLAFAARGWGWACQV 765
            AGP+  +SW+++G     SGL YAELS++ P+ G +YAYA+V +GELPA++ A CLTLE+  S +AVAR W DK+ E+      + G         R W+   L+P  Q  G I+P+A L+    VL+LL GV+  K VT + T IK+A+ +F+ + G +LFQ +N+ PF P   G+SG+ RG++++FFGY+GYDE+C LAGE+ NP  ++P +I   L+IV+V YV +ALAL+GMVP +   + SSF  AF  RGW    Q+
Sbjct:  156 AGPSTCLSWIISGAAACCSGLCYAELSALFPTAGSSYAYAYVTMGELPAVVAAACLTLEYVFSASAVARSWGDKIVEYYMQEYRSSGAAVEXXXXERDWIVTMLEPGGQN-GYINPMAFLVSFLSVLLLLNGVKESKFVTNLFTTIKIALVSFLCIAGFLLFQKENIQPFIPAKFGLSGIFRGATSSFFGYIGYDEICCLAGEAQNPSVNLPRSILASLVIVTVLYVAAALALTGMVPWEYISETSSFPDAFRYRGWELCAQI 417          
BLAST of mRNA_L-elsbetiae_contig12759.2215.1 vs. uniprot
Match: A0A7S4J7E7_9STRA (Hypothetical protein n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J7E7_9STRA)

HSP 1 Score: 212 bits (539), Expect = 4.220e-61
Identity = 113/258 (43.80%), Postives = 166/258 (64.34%), Query Frame = 1
Query:    1 AGPAGIVSWLLAGIGCVFSGLSYAELSSIIPSEGGTYAYAFVALGELPAIITAWCLTLEFGISGAAVARVWADKVSEWVALGGGTGST-EMHRFWMFALDPFPQVFGGISPLAGLLQAACVLVLLRGVEMGKRVTTVMTAIKMAVCAFIIVGGLMLFQPDNLVPFAP--MGVSGVIRGSSAAFFGYLGYDEVCALAGESINPRKDVPLAIAYILLIVSVTYVLSALALSGMVPADGSPDGSSFVLAFAARGWGWACQV 765
            AGPA ++SW +AG+   FSGL YAEL+   P+ G +YAY++V++GELPA+I   CLTLE+  S +AVAR W DK+ E++ +   T    E+    +  LDP      G +P+A L+ AA V +LL+GV+  K+VT + T IKM +  F+  G L L  P NL P  P   G SG+ RG++++FFGY+G+DE+C ++GE+ NP K++P A+   LLIV+  Y+ +A+AL+GMVP +     S+F   F  RGW  A ++
Sbjct:   97 AGPATVISWAIAGVAACFSGLCYAELAGKYPTAGSSYAYSYVSMGELPAVIAGACLTLEYIFSASAVARSWGDKIVEYIRVNSLTWENQELWNSVLKVLDPGL----GFNPMAFLVSAASVTLLLKGVKESKKVTNIFTVIKMCLVLFMAFGSLYLLNPSNLSPLVPPQFGASGIFRGATSSFFGYIGFDEICCMSGEAKNPSKNLPRAVIASLLIVTSLYMFAAVALTGMVPYEDISSTSAFPDGFRYRGWEVAAEI 350          
BLAST of mRNA_L-elsbetiae_contig12759.2215.1 vs. uniprot
Match: A0A067BUM9_SAPPC (AA_permease_C domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BUM9_SAPPC)

HSP 1 Score: 210 bits (535), Expect = 7.350e-61
Identity = 117/268 (43.66%), Postives = 158/268 (58.96%), Query Frame = 1
Query:    1 AGPAGIVSWLLAGIGCVFSGLSYAELSSIIPSEGGTYAYAFVALGELPAIITAWCLTLEFGISGAAVARVWADKVSEWVALGGGTGSTEMHRFWMFALDPFPQVFGGISPLAGLLQAACVLVLLRGVEMGKRVTTVMTAIKMAVCAFIIVGGLMLFQPDNLVPFAP------------MGVSGVIRGSSAAFFGYLGYDEVCALAGESINPRKDVPLAIAYILLIVSVTYVLSALALSGMVPADGSP-DGSSFVLAFAARGWGWACQV 765
            AG A  +SWL+AG  C+ +G +Y E+SS++PS G TYAY++  LGELPA++  W LTLE+GI  A VAR WADKV EWV  G   GST  +  W+             S L  L  A CV ++L G++ GK    V+T IK++V  FII+ G +  QP+N  PF P             GV GV+ G+S AFFGY G+DEVC +A E+ NPRK VP A+  ++L        ++LALSGM+P D +P +G  F   F  +G+ WA  +
Sbjct:   59 AGAAAFLSWLIAGFSCILNGFAYMEMSSLVPSSGSTYAYSYYGLGELPAVVAGWLLTLEYGICSAGVARSWADKVHEWVKEGLPEGSTSAN--WLNDSHA--------SFLGALCMAVCVAIVLVGIKFGKHFINVVTTIKVSVVLFIIIVGFIATQPENFTPFVPPVVPATADSAAQFGVQGVMLGASQAFFGYTGFDEVCCMAAEAKNPRKTVPRAVIGVILGTMFLSSFASLALSGMMPYDANPPNGFYFSAGFQYQGYNWAGTI 316          
BLAST of mRNA_L-elsbetiae_contig12759.2215.1 vs. uniprot
Match: A0A7S2ER43_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ER43_9STRA)

HSP 1 Score: 211 bits (538), Expect = 2.430e-60
Identity = 114/257 (44.36%), Postives = 160/257 (62.26%), Query Frame = 1
Query:    1 AGPAGIVSWLLAGIGCVFSGLSYAELSSIIPSEGGTYAYAFVALGELPAIITAWCLTLEFGISGAAVARVWADKVSEWVALGGGTGSTEMHRFWMFALDPFPQVFGGISPLAGLLQAACVLVLLRGVEMGKRVTTVMTAIKMAVCAFIIVGGLMLFQPDNLVPFAPM--GVSGVIRGSSAAFFGYLGYDEVCALAGESINPRKDVPLAIAYILLIVSVTYVLSALALSGMVPADGSPDGSSFVLAFAARGWGWACQV 765
            +GPA  +SWL++G     SGL YAEL SI P+ G +YAYA+V +GELPA++ A CLTLE+  S +AVAR W DK+ E+                   L P     G ++P+A L+ A  VL+LL GV+  K VT + T IK+ +  F+ + GL+LF   N+ PF P+  G+ G++RG++++FFGY+GYDE+C LAGE+ NP  ++P AI Y L IV+  YV++A  L+GMVP +     S F  AF  RGW  A Q+
Sbjct:  156 SGPATCISWLISGAAACCSGLCYAELGSIFPTAGSSYAYAYVTMGELPAVVAAACLTLEYVFSASAVARSWGDKIVEYYLQEHPDNDGTQGYVMQVLLQP-GGTNGHVNPMAFLISALSVLLLLNGVKESKFVTNLFTGIKLVLICFLCIAGLLLFNASNITPFIPVQFGLPGILRGATSSFFGYIGYDEICCLAGEATNPSYNLPRAILYSLGIVTALYVMAAFVLTGMVPYEEISPTSGFPDAFRYRGWEVAAQI 411          
BLAST of mRNA_L-elsbetiae_contig12759.2215.1 vs. uniprot
Match: A0A7S4RXA7_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RXA7_9STRA)

HSP 1 Score: 211 bits (536), Expect = 2.950e-60
Identity = 119/260 (45.77%), Postives = 168/260 (64.62%), Query Frame = 1
Query:    1 AGPAGIVSWLLAGIGCVFSGLSYAELSSIIPSEGGTYAYAFVALGELPAIITAWCLTLEFGISGAAVARVWADKVSEWVALGGGTGSTEMH--RFWMFALDPFPQVFGGISPLAGLLQAACVLVLLRGVEMGKRVTTVMTAIKMAVCAFIIVGGLMLFQPDNLVPFAPM---GVSGVIRGSSAAFFGYLGYDEVCALAGESINPRKDVPLAIAYILLIVSVTYVLSALALSGMVPADGSPDGSSFVLAFAARGWGWACQV 765
            AGP+  +SW +AG     SG  YAELS  IP  G +Y YAFV++GELPA +T  CL LEF +SG+AVAR W DKV EW+ +       E+H  + W++A   + Q   GI+P+A L+  +  L+LL GV+  K +T + T IK+A+  F+ +GGL+L   +NL PF P    G +G++RG++ +FFGYLGYD +C +AGE+INP  ++P A+ Y L+IV+  YV++ALAL+GM         S F  AFA+RG  WA Q+
Sbjct:  163 AGPSTCLSWTMAGGAAFLSGCCYAELSGRIPHAGSSYVYAFVSMGELPAFLTGSCLVLEFLVSGSAVARSWGDKVVEWLTV-------ELHADKEWVYA---YLQPGYGINPMAFLVSCSTTLLLLGGVKESKMITDIFTWIKVALVLFMAIGGLLLLDTNNLQPFMPPELNGWNGIMRGATTSFFGYLGYDGICCVAGEAINPTVNLPKAVMYTLIIVTALYVVAALALTGMQNYTEISVESGFPEAFASRGVMWAAQL 412          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12759.2215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQA2_ECTSI6.480e-13682.75Cationic amino acid transporter-like protein n=2 T... [more]
A0A7R9UE61_9STRA1.740e-6646.67Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2PKQ0_9STRA1.460e-6546.15Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A8J9S9B2_PHATR5.070e-6345.70Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A7S4V2K1_9STRA4.510e-6245.35Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S2IG81_9STRA3.010e-6145.25Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S4J7E7_9STRA4.220e-6143.80Hypothetical protein n=3 Tax=Odontella aurita TaxI... [more]
A0A067BUM9_SAPPC7.350e-6143.66AA_permease_C domain-containing protein n=1 Tax=Sa... [more]
A0A7S2ER43_9STRA2.430e-6044.36Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4RXA7_9STRA2.950e-6045.77Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12759contigL-elsbetiae_contig12759:359..4641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score409.8
Seed ortholog evalue9.1e-112
Seed eggNOG ortholog2880.D8LQA2
KEGG koko:K03294
KEGG TC2.A.3.2
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0016020,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
EggNOG free text desc.amino acid transport
EggNOG OGsCOG0531@1,KOG1286@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons4
Model size765
Cds size765
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12759.2215.1prot_L-elsbetiae_contig12759.2215.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12759 359..4641 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815463.5702856-CDS-L-elsbetiae_contig12759:358..5351622815463.5702856-CDS-L-elsbetiae_contig12759:358..535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12759 359..535 +
1691682910.0436773-CDS-L-elsbetiae_contig12759:358..5351691682910.0436773-CDS-L-elsbetiae_contig12759:358..535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12759 359..535 +
1622815463.5840013-CDS-L-elsbetiae_contig12759:1300..15461622815463.5840013-CDS-L-elsbetiae_contig12759:1300..1546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12759 1301..1546 +
1691682910.05833-CDS-L-elsbetiae_contig12759:1300..15461691682910.05833-CDS-L-elsbetiae_contig12759:1300..1546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12759 1301..1546 +
1622815463.6034229-CDS-L-elsbetiae_contig12759:3737..38781622815463.6034229-CDS-L-elsbetiae_contig12759:3737..3878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12759 3738..3878 +
1691682910.0691233-CDS-L-elsbetiae_contig12759:3737..38781691682910.0691233-CDS-L-elsbetiae_contig12759:3737..3878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12759 3738..3878 +
1622815463.6162732-CDS-L-elsbetiae_contig12759:4440..46411622815463.6162732-CDS-L-elsbetiae_contig12759:4440..4641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12759 4441..4641 +
1691682910.0785697-CDS-L-elsbetiae_contig12759:4440..46411691682910.0785697-CDS-L-elsbetiae_contig12759:4440..4641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12759 4441..4641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12759.2215.1

>prot_L-elsbetiae_contig12759.2215.1 ID=prot_L-elsbetiae_contig12759.2215.1|Name=mRNA_L-elsbetiae_contig12759.2215.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=255bp
AGPAGIVSWLLAGIGCVFSGLSYAELSSIIPSEGGTYAYAFVALGELPAI
ITAWCLTLEFGISGAAVARVWADKVSEWVALGGGTGSTEMHRFWMFALDP
FPQVFGGISPLAGLLQAACVLVLLRGVEMGKRVTTVMTAIKMAVCAFIIV
GGLMLFQPDNLVPFAPMGVSGVIRGSSAAFFGYLGYDEVCALAGESINPR
KDVPLAIAYILLIVSVTYVLSALALSGMVPADGSPDGSSFVLAFAARGWG
WACQV
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mRNA from alignment at L-elsbetiae_contig12759:359..4641+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12759.2215.1 ID=mRNA_L-elsbetiae_contig12759.2215.1|Name=mRNA_L-elsbetiae_contig12759.2215.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4283bp|location=Sequence derived from alignment at L-elsbetiae_contig12759:359..4641+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGGGCCGGCGGGGATCGTGAGCTGGCTCCTGGCCGGGATCGGGTGCGT CTTCAGCGGCCTGTCGTACGCGGAGCTTTCTTCGATAATTCCTTCGGAGG GGGGCACCTACGCCTACGCGTTCGTCGCGTTGGGAGAGCTCCCCGCGATC ATCACGGCTTGGTGTCTCACGCTGGAGGTGGGTTTAGAAGTCACAGCGGT AAATAGTTAGGTGTAAGGATCACACGCGGAAATCAAATGGGGGGGGGCCG TGCGTGAGGGATGCTTGTTGGGTGTAGTGGGTGCGGCGGAGGAAGTTCTA TCACGTCATGTAGACGGGTTCAAACGGGGGTCTTGCTTCGGTCGCCGGAA CGCCGAAAGAGTCGAAAACCGGGCGGGGTCGTTATTTGCATGTTTACCCA TCGGCTGACTTAAGGAGACTCATGTGTGGGGAGTGGTGGAGGAATTGCTG TTCCGGGTACTTCGCGCGCCGCCGCGCCAGTAGTGCTTTGGCGTGCTATT TTGGAGCATACGACTCGGCGTTCTTTTTTATTCAGCGGGCGGTGGTGCAA AATGTTGCGGCTGTCCATACCTATGTCTGCGCTGCTTTGTAAATAAGCAA GAACATGTGCTCCGTCTTGTGCACGGTAGGCTGCGGGATCTCTTGCGGTC TTACTATGTATGTTTTCTTACTGCAAGACTCTCTCGAGCTTATATTGAAA CTGTTTATTCATATGTAACCCCTCGCCTTCCAGTAGACTATACCCTTCTT AGGGTAAATTATCCTGTGACTACGGGAGTCGATCACGGGACTGTCAGTGT TGGATGAGTACATACGGACTCATGAAGGTGTACTGGATAGATAAGAGAGC TGGGAACGGTTTCTAATGTGTGAAGACAACGACAACAACGACAGCAACAA CAATTCATCATTCTTCGACCCATCCTCCTCTCCTTCCTCTAGTTCGGCAT CTCCGGAGCGGCGGTGGCTCGGGTCTGGGCCGACAAGGTGTCGGAGTGGG TAGCTCTGGGCGGGGGTACCGGTTCTACGGAGATGCACAGGTTCTGGATG TTCGCGCTGGACCCGTTCCCTCAGGTGTTCGGCGGGATCAGCCCTCTCGC CGGCCTGCTGCAGGCGGCGTGCGTGCTGGTGCTGCTGAGGGGCGTGGAGA TGGGCAAGCGCGTGACGACCGTCATGACGGCGATCAAGGTGTGTGTGTTG TCGTTGTTGTTTGGCGGATCGGTGGTGTGTGTGTGTGTGTGTGTGTGCCT TTTTGTTTGGTGGATCGGTGGTGTGGGTGGTGAACGAGTGGCGTGCTTTT TGCCGCGGGTGGAGTGTTTACGGCGTCCTGTGTAGGTATGTGCGTACCTA CGTGGCTGGTAGGCAGGCGACGACGGAGGGGCGACCCCCAGCGCAAAGCT GGACAAGACAGCACAAACACCAGCTGCGCGAGTCGTGTTTGTTGCCTGTG GAACACGAGGCGGGGATTCGCGCCTCTTTTTTGCGGGTGCGCGTATCTTA TCTTTTTGAGCGGGCACGCCGTGCATGAGTGTGTAACCGAGCAACGTTTT AGTTCGTGTACATACCAGCAGACGGGTTGCACCCCAGCTTACGTGTTGTT GTTGGATCTTGGAAGCGCGCCTGAGGCAAATTCTTGGAAAGTTTTTGAGC TTGTTTGTTTTTTTTCGCGGCACGAATCGTGTCGGCGTCGCTGAAGTCTG TGGTGTCTTTGACGAGGGACGAAAAAGAAGAAGGTGTTTTGGCGTAGGGT GCGCGGCGTCTCTCCAGGCTCGCAGACAAAATATCGGACGCGTCGGTGTC GGTGAACACGTGGTCAACACACTCAAAGACTCAATTTTCAATTTGGTTTT TCGTCGCCAAAACCTTCGGTCTCGAGCTTGTAGATTTGAGCTCGCAAACA CGTGGTCAACACTCAAAGACTCAATTTTCAATTTGTTTTTTTGTCGCCAA AACCTTCGTTCTCGAGCTTGTAGATTTGAGCTCGCAAAGGGTTTTGGGGA GGGAGCCACTCACCTGTGCTGTGGTGTATTCGCTGTGCCTGTTGCCTTTT ACCAGGTGCTCTCTTTTTGGTATCATGTCTTTGGCTTTTGACAAACCGGG GTCTTTTTATTTGCCATACGTGCACGGCTAGTCCCGGGTCTTACCGTATG CGGAGAGAATGTTGTAAGTGTTTTGAGTTGTGGTGGTGGTTGTGAGGGTG ATGGTGGTGCAGAGGCGACATGTTATTTCGAGATCTTTTGAGCGACATGC AAATCGGTAAGACCCAAGATTGTGTGGGGACTGGGGGTCGCCGCCGCACG ATAGTCCGCCGGAAAAGGTGCTTCGCCAAATATGTCATCACTGTTGTATG GAATACCGTTTGAACCCCATATCGAGTCCTCTAGTGTGGGGGTAGGTTCC ATCTTTGATTAACTGTTTATTTTTTAAAAGAAAGGAGAACCGGGGAGGAG TATACCGTAGGTGACACAAGATACCACACCCCCTGGACATATTTTCAAAG ATCGATTCCTCCCCAGCAAGAAGAGTGCCAGTGCCAGAAAGGGTAGCGTT GGAAAGATCTAGCCGAGGGCTGTCCGAAAATGTTTCGTTTGGTGCTGGCA CCTTCTTCGTTACGGAGTAATGGAGCTCTAAAATTCGGTCCAGGGGGTGT GGTATCTTGTGTCACCTACGGTAAGTACATACACACGTGTCCTCTCCTTC TATGTACATACGTGCGGGCGGGCCTTTTGGCGGACGACCCGCGGCAAGTG CTAAGTGCTGCAGGCCGGGGCCGGGTGGGGTGTCCTACTCCCTTCCCTGG CCGCCGCTTGCCAAGGAGGCCCCGCGGACCGGACCAATCAGAGGCCCCAA CACGCCCGTTTTCTCACCGCCACCCTGCACGCCCCACACACCCCGCCATG TGGGTAAAGTACGTGTGTACCATGCCGTGTGCGGCGTGCGGCGCAAAACC GGGCGATGGACTTGAGCTATGTATCTGCGGTTTTCTTTTTCACGGTCGCG GTCTTGGCTGCTTCACCCTCGATCTGCGTGCATATATGTATTGTTGTTGT TTCTCACATTAGCCAATCTAGTCCAAAACATCCTTGGGGGGCGGCCCGTG GTCAAAACACTTAAGGGGGCACACTCGACGCCGCGGAAGAAACATATAAA ACCAAAAATTATGGTACATACGCGCCCGGCGGTACTAAACTAGACCCCCA GGGGTCTTCCATCTCGCCGACACAAAATCAAGGGTCGAGTACATACTAGT CATATGTATGTATGCTGATATATATGTGCGGGGGGCATTTTTCCGGCACC ATAATATTGGCGGTTTGTTGCCTTTCCGTTTTTATTTTTATTTTATTTTC CTCTTTGTGTCCACCGCGTTCAAACGCAGATGGCGGTGTGCGCGTTTATT ATTGTCGGGGGGCTGATGCTGTTCCAGCCCGACAACTTGGTGCCCTTCGC GCCGATGGGAGTGTCGGGGGTCATCAGGGGGTCTTCGGCGGCGTTTTTTG GCTACCTGGGGTACGATGAGGTGAGGGGACTGCTATCCGTTGTGTTGTGA TGTGCAGTCGTGGCCGTGTTCGCGGATCTATGTGAAGTATGCCTTGATCT GTTTGTTCATGAGGGGGTTTCGCATCGTCGTTGTTCTTGGCATCATGAGC GCCTTTTCGAAAGGGCAGGCAGGTAATGTAAGCTTTTCAAGGTATGTGGT GAAGACAAGAAGGGCGCAACGAATGGCGTCGTCCAGGGCAAGGGAAGGCG AGGGAAGGGAAGGGAAAGGAAAGGAAAGGACAGGACAGGAAGGAAACATA CACACCGCACGGACGCGCAAACACGCACGCCAGTCTATCTCCTTTGTCTC TCTCTTGTGTGTTTATCTTGTTTGTTTCTGCTGCATACCGTCTCGTTTCG CACACGTACACAATATGTTGTATAAACAATCACAGTATGTAGTATAAATA ATCCTAACCGGACAAGACACCTCACCCCAGCACCGCGTACCACCACCACC ACCACCACTATCACGCGACGCGCTGCGACCTTGGGGCTGAGCTTGACGCT TGCCCGACGTGACCTTACTTGACCCTTTACAGGTGTGTGCCTTGGCCGGG GAATCGATCAACCCTCGAAAAGACGTTCCCCTGGCCATCGCCTACATCCT CCTGATCGTGTCGGTCACGTACGTCCTGTCCGCCCTGGCGCTGTCGGGCA TGGTGCCGGCGGACGGCTCCCCGGACGGCTCTTCGTTCGTGCTGGCCTTT GCTGCGAGGGGGTGGGGGTGGGCGTGCCAGGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12759:359..4641+

>mRNA_L-elsbetiae_contig12759.2215.1 ID=mRNA_L-elsbetiae_contig12759.2215.1|Name=mRNA_L-elsbetiae_contig12759.2215.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1530bp|location=Sequence derived from alignment at L-elsbetiae_contig12759:359..4641+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGGGCCGGCGGGGATCGTGAGCTGGCTCCTGGCCGGGATCGGGTGCGT
CTTCAGCGGCCTGTCGTACGCGGAGCTTTCTTCGATAATTCCTTCGGAGG
GGGGCACCTACGCCTACGCGTTCGTCGCGTTGGGAGAGCTCCCCGCGATC
ATCACGGCTTGGTGTCTCACGCTGGAGGCTGGGCCGGCGGGGATCGTGAG
CTGGCTCCTGGCCGGGATCGGGTGCGTCTTCAGCGGCCTGTCGTACGCGG
AGCTTTCTTCGATAATTCCTTCGGAGGGGGGCACCTACGCCTACGCGTTC
GTCGCGTTGGGAGAGCTCCCCGCGATCATCACGGCTTGGTGTCTCACGCT
GGAGTTCGGCATCTCCGGAGCGGCGGTGGCTCGGGTCTGGGCCGACAAGG
TGTCGGAGTGGGTAGCTCTGGGCGGGGGTACCGGTTCTACGGAGATGCAC
AGGTTCTGGATGTTCGCGCTGGACCCGTTCCCTCAGGTGTTCGGCGGGAT
CAGCCCTCTCGCCGGCCTGCTGCAGGCGGCGTGCGTGCTGGTGCTGCTGA
GGGGCGTGGAGATGGGCAAGCGCGTGACGACCGTCATGACGGCGATCAAG
TTCGGCATCTCCGGAGCGGCGGTGGCTCGGGTCTGGGCCGACAAGGTGTC
GGAGTGGGTAGCTCTGGGCGGGGGTACCGGTTCTACGGAGATGCACAGGT
TCTGGATGTTCGCGCTGGACCCGTTCCCTCAGGTGTTCGGCGGGATCAGC
CCTCTCGCCGGCCTGCTGCAGGCGGCGTGCGTGCTGGTGCTGCTGAGGGG
CGTGGAGATGGGCAAGCGCGTGACGACCGTCATGACGGCGATCAAGATGG
CGGTGTGCGCGTTTATTATTGTCGGGGGGCTGATGCTGTTCCAGCCCGAC
AACTTGGTGCCCTTCGCGCCGATGGGAGTGTCGGGGGTCATCAGGGGGTC
TTCGGCGGCGTTTTTTGGCTACCTGGGGTACGATGAGATGGCGGTGTGCG
CGTTTATTATTGTCGGGGGGCTGATGCTGTTCCAGCCCGACAACTTGGTG
CCCTTCGCGCCGATGGGAGTGTCGGGGGTCATCAGGGGGTCTTCGGCGGC
GTTTTTTGGCTACCTGGGGTACGATGAGGTGTGTGCCTTGGCCGGGGAAT
CGATCAACCCTCGAAAAGACGTTCCCCTGGCCATCGCCTACATCCTCCTG
ATCGTGTCGGTCACGTACGTCCTGTCCGCCCTGGCGCTGTCGGGCATGGT
GCCGGCGGACGGCTCCCCGGACGGCTCTTCGTTCGTGCTGGCCTTTGCTG
CGAGGGGGTGGGGGTGGGCGTGCCAGGTAGTGTGTGCCTTGGCCGGGGAA
TCGATCAACCCTCGAAAAGACGTTCCCCTGGCCATCGCCTACATCCTCCT
GATCGTGTCGGTCACGTACGTCCTGTCCGCCCTGGCGCTGTCGGGCATGG
TGCCGGCGGACGGCTCCCCGGACGGCTCTTCGTTCGTGCTGGCCTTTGCT
GCGAGGGGGTGGGGGTGGGCGTGCCAGGTA
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