mRNA_L-elsbetiae_contig12755.2213.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12755.2213.1
Unique NamemRNA_L-elsbetiae_contig12755.2213.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12755.2213.1 vs. uniprot
Match: D7G7E7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E7_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.150e-25
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 3 
Query:   45 KVLVRLRHVYGHDAELYDEFSGYLLSPLLRLVPSALSSREAVRRSSRVLVSLRENCAACLFRE 233
            +VLVRLRHVY HDAELY+EFS  LLSP+LRLVPSALSS +AVR SSRV+VSLRENC ACL R+
Sbjct:   34 EVLVRLRHVYDHDAELYEEFSRELLSPVLRLVPSALSSLDAVRLSSRVVVSLRENCVACLVRK 96
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12755.2213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7E7_ECTSI1.150e-2579.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12755contigL-elsbetiae_contig12755:1767..4683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size272
Cds size270
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12755.2213.1prot_L-elsbetiae_contig12755.2213.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12755 1769..4683 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815463.3923013-CDS-L-elsbetiae_contig12755:1768..18051622815463.3923013-CDS-L-elsbetiae_contig12755:1768..1805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12755 1769..1805 -
1691682909.975808-CDS-L-elsbetiae_contig12755:1768..18051691682909.975808-CDS-L-elsbetiae_contig12755:1768..1805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12755 1769..1805 -
1622815463.406691-CDS-L-elsbetiae_contig12755:3556..37421622815463.406691-CDS-L-elsbetiae_contig12755:3556..3742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12755 3557..3742 -
1691682909.9867506-CDS-L-elsbetiae_contig12755:3556..37421691682909.9867506-CDS-L-elsbetiae_contig12755:3556..3742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12755 3557..3742 -
1622815463.4215446-CDS-L-elsbetiae_contig12755:4636..46831622815463.4215446-CDS-L-elsbetiae_contig12755:4636..4683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12755 4637..4683 -
1691682909.9962392-CDS-L-elsbetiae_contig12755:4636..46831691682909.9962392-CDS-L-elsbetiae_contig12755:4636..4683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12755 4637..4683 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12755.2213.1

>prot_L-elsbetiae_contig12755.2213.1 ID=prot_L-elsbetiae_contig12755.2213.1|Name=mRNA_L-elsbetiae_contig12755.2213.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
RRRKKRAPTRVLRMARCSCGCGTSTATTPSSTTSSPDISCPRCCAWCRRR
CLLARRCGGRRGCWSLSARTAPPACSGRTSRTTWLRPCTG
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mRNA from alignment at L-elsbetiae_contig12755:1767..4683-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12755.2213.1 ID=mRNA_L-elsbetiae_contig12755.2213.1|Name=mRNA_L-elsbetiae_contig12755.2213.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2917bp|location=Sequence derived from alignment at L-elsbetiae_contig12755:1767..4683- (Laminarionema elsbetiae ELsaHSoW15)
AGGAGGAGGAAGAAGAGAGCTCCGACAAGGGTCCTCCGGATGGCAAGGTG
TGGTGAATGAATGAGCATGAGAACGTTCCGTGGAATGGATGTCTTGCAGG
GTATACATACCGCGGGTTGAGACACGATGAGAACGTTCCGTGGAATGGAT
GTCTTGCTTGCAGGGTACAACATCTTGCAGGGTACAACCGCGCGTGAAGG
CACCATGAGAACGTTCCGTGGAATGGATGTCTTGCAGGGTATACATACCG
CGCGTTAAGACACCATGAGAACGTTCCGTGGAATGAATACCTTGCGGGGC
ACATGCCGCGCGTTGATGACCACGGGGGCCCTCTGAAGGTTTTTTCTGCA
GACGGCAAGGCAAGGCTTGACGTCCCCTCTGTATGCGTACCGGAAGTGTC
GCTCCAAGAGCGTTTTTCGAACGTGCGTAACAAAACACTAGGTAGCTACT
AGAGTACATACGTGTGTTGTATTCACCAAATTTGAGCTTGTTTGAGGCAT
ATATAGATACCAGGGTTCAGTAAACCTGGCAAGCTGCCCTCGTTGCAAGG
AACCCATCGAGCACTGGAAATAAGAAATAAATGTGAAGAAGAACAATAGG
AAAAAAAAAAAAATCATATATATATTATACTTCGAAGGACATTTTAGGTT
AAGTTACGCTGTGACCACGGGAAGCGACCGCGTCGGTGTTGGATTAGTAC
GGACTCATGGAGGTGTACTGGACAGAGGGATCGGAAGGGAACGGAACGGT
TTTTGATTTTTAATGTGAAGACAACAGACACACACACACACACACACACG
CACACACACACAACACATCCTCAAGATCAACCATTGGTCCACAACATGTA
AAAATACAAGTAGTGCATCTTTGTTTGATGTTACGGATAGTCCCGCTGAC
AGTCCTGTCGTCGTGACCGCCGTGGTCGTCGTCCGAATCAGGTGCTCGTG
CGGCTGCGGCACGTCTACGGCCACGACGCCGAGCTCTACGACGAGTTCTC
CGGATATCTCCTGTCCCCGCTGCTGCGCCTGGTGCCGTCGGCGCTGTCTT
CTCGCGAGGCGGTGCGGCGGTCGTCGAGGGTGCTGGTCTCTCTCCGCGAG
AACTGCGCCGCCTGCCTGTTCCGGGAGGTATGTGATGATGGAATGGATGA
GATGGTAACGGGATGGGATGGGATGGGATGGCTGGCGGAAAATTGGTCCA
TGTAGGAGTACGTGGTATTAGGTGGGATGGTAAATGATGATGGGATGGGA
TGGGATGGCTGCCGGAAAATTGGTCCCATCGCATGATACCATCCCATCAC
CACCATGCCCATCGAAGACACCAGCAGTAACGAGGTGCTTGAAGTGTTTG
AAGTGTTTACAGTGCCTACGTAAACTTTTTTTTTTTGTTTTTGGCCAGCA
AACGCCAGCCGTCCTTTAAGCGTGGGAACGCCCTCATGAAGAATCCACCC
CCTCTCTATTATAGGAAATAATAGTCAGGGAGAGTACTTTGCATCAAAAT
ACCCTCCCAATTAATTTTGAGCGGTGGGAGGTAGGGAGGTGAGAGTATTT
TTTTATATTATTTTTTCTTGCCAGCGCTCGGAATGATGTTAAGGGATCAG
ACCACTCAGCCATGAGTTACAAGGTTAACCAGGTATCAGACTGTTGGTAC
ATCTTGTAACACGAGGGTCCGAGCAAATTTAGGAGCAGCGCACCATTTCG
GCCGCTGCGTAGTAACCGCAGAGTTTTTTATTTTTAGTGTTTAAATAGCC
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCAATTTTATGTTTTGTTC
CCCGTGTTTTTATTTTTTTTAATGTGATTTCTTCTCTCACCNNNNNNNNN
NGTAACCGAGTTGTTTTTTTTTTTTTTTTTTTAATTTGTTTTTTTTTTTT
TTTTTTTTTGCCAATATTGTAATCATGCGAAGGTTCGCACCCCCGTGTTA
GCATTTTTCTAAAGCGTATTTCTCCACACACCAGGAGGGTGCGAACTCAT
TAACTGATACCTCTCTGGAAAGCCCCCGACGAGACGTTTCGAAAAACCAC
CCTTTTCGGCAGTGGTTTGTACCCTCCTGGTCGTCCCACGCACGTTGGGA
GTAGTCTACGCAGGTTTTTGTTCAGGGAAACATATGGGATAAAGTATGGA
ATCGAGGAGTGTTTGGGGGGTCGGTGGTTAGGGTTAGGGTTAGGGTTACG
GAACCCCTACTACTCTATTTCACGTATAAACCAATATTCTCCGTTTTTTC
TCGCGAAGGCAGTCCTCCTGTGTGACGGGACCCCGGTTGGGCCGTCTAGC
TAACCGTAGTGGAGTATGGGGGCCAGTGGGGTAGACGAAGAATAAGCCAA
TAATGGGAGGGGGAAAACAACATTGGGAATATGCCAGCATTGGGAGGAAG
AACAAAAAGAGGTGGAATTTTTTTTAAAGAAACAAAGAATCAAAGATGGA
ACCTAACCCACACTACAGCAAAGACTCGATATGGGGTTCAAACGGTATTC
CATACAGAGACGTAATATTTGGCGAAGCGAGCAGTGCCAAAAAGGGTAGC
GTTGGAAAGATCTAGCCGAGGGCTGTCCGAAAATGTTTTGTTTGGTGCTG
GCACCTTCTTGGTTACGGAGTAATGGAGCTGTAAAATTCGGTCCAGGGGG
TTTGGTATCTTGTGTCACTCACCTACGGTAGCATCCTCCTATGTCCATAC
ATCCATTTTTACATTTTTCTATGCATACATGTTCTTTTGTTTTATTTCTC
TTCCGCGGCGTCGAGTGTGCCTTGTTTTGTGACCACGGGCCCCCAAGGAT
GGATATTTTCGGGCTATTTAGAGAGCTAATGTGAGAATCGACAACAAATA
ACACAAGGTGCCTACGTTACTCGTGCAGGACATCGCGCACGACTTGGCTT
CGGCCCTGTACCGGCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12755:1767..4683-

>mRNA_L-elsbetiae_contig12755.2213.1 ID=mRNA_L-elsbetiae_contig12755.2213.1|Name=mRNA_L-elsbetiae_contig12755.2213.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig12755:1767..4683- (Laminarionema elsbetiae ELsaHSoW15)
AGGAGGAGGAAGAAGAGAGCTCCGACAAGGGTCCTCCGGATGGCAAGAGG
AGGAGGAAGAAGAGAGCTCCGACAAGGGTCCTCCGGATGGCAAGGTGCTC
GTGCGGCTGCGGCACGTCTACGGCCACGACGCCGAGCTCTACGACGAGTT
CTCCGGATATCTCCTGTCCCCGCTGCTGCGCCTGGTGCCGTCGGCGCTGT
CTTCTCGCGAGGCGGTGCGGCGGTCGTCGAGGGTGCTGGTCTCTCTCCGC
GAGAACTGCGCCGCCTGCCTGTTCCGGGAGGTGCTCGTGCGGCTGCGGCA
CGTCTACGGCCACGACGCCGAGCTCTACGACGAGTTCTCCGGATATCTCC
TGTCCCCGCTGCTGCGCCTGGTGCCGTCGGCGCTGTCTTCTCGCGAGGCG
GTGCGGCGGTCGTCGAGGGTGCTGGTCTCTCTCCGCGAGAACTGCGCCGC
CTGCCTGTTCCGGGAGGACATCGCGCACGACTTGGCTTCGGCCCTGTACC
GGCGACATCGCGCACGACTTGGCTTCGGCCCTGTACCGGC
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