mRNA_L-elsbetiae_contig1272.2187.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1272.2187.1
Unique NamemRNA_L-elsbetiae_contig1272.2187.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1272.2187.1 vs. uniprot
Match: C1MR62_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MR62_MICPC)

HSP 1 Score: 75.5 bits (184), Expect = 1.400e-16
Identity = 29/58 (50.00%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 QQLDLYGLYKQASLGDCRSQRPGLFDPTGRAKWTSWKSCEGLGEIEAMQRYRRVAEAV 174
            +QL+LYG +KQA++GDC   RPG+FDP G+AKW +W  C+G+   EAM+ Y  + E++
Sbjct:   24 EQLELYGWFKQANVGDCNIARPGMFDPKGKAKWDAWDKCKGVSSEEAMKNYVELVESL 81
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BLAST of mRNA_L-elsbetiae_contig1272.2187.1 vs. uniprot
Match: K8ERQ6_9CHLO (Acyl-CoA-binding protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8ERQ6_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 4.110e-16
Identity = 30/58 (51.72%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 QQLDLYGLYKQASLGDCRSQRPGLFDPTGRAKWTSWKSCEGLGEIEAMQRYRRVAEAV 174
            +QL+LYG +KQA++GDC ++RPG+FD  G+AKW +WKS EG G+  AM++Y  V   +
Sbjct:   25 EQLELYGWFKQATVGDCNTERPGMFDLKGKAKWDAWKSREGSGKGTAMEKYCEVVRGI 82
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BLAST of mRNA_L-elsbetiae_contig1272.2187.1 vs. uniprot
Match: A0A6P6Y108_DERPT (acyl-CoA-binding protein-like n=1 Tax=Dermatophagoides pteronyssinus TaxID=6956 RepID=A0A6P6Y108_DERPT)

HSP 1 Score: 71.2 bits (173), Expect = 6.120e-15
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    7 LDLYGLYKQASLGDCRSQRPGLFDPTGRAKWTSWKSCEGLGEIEAMQRYRRVAE 168
            L+LYG YKQA++GDC ++RPGLFDP GR KW  W   +G+ + +A  +Y  + E
Sbjct:   23 LELYGYYKQATIGDCNTERPGLFDPKGRYKWDEWNKLKGMSKEQASAKYIEIVE 76
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BLAST of mRNA_L-elsbetiae_contig1272.2187.1 vs. uniprot
Match: A0A293M2U1_ORNER (Acyl-CoA-binding protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293M2U1_ORNER)

HSP 1 Score: 70.5 bits (171), Expect = 1.440e-14
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    7 LDLYGLYKQASLGDCRSQRPGLFDPTGRAKWTSWKSCEGLGEIEAMQRY 153
            L+LYGLYKQA++GDC + +PG+FDP GRAKW +W S +G+ +  A + Y
Sbjct:   27 LELYGLYKQATVGDCNTSQPGMFDPKGRAKWHAWNSRKGMSQSAAKEAY 75
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BLAST of mRNA_L-elsbetiae_contig1272.2187.1 vs. uniprot
Match: A0A068S1S2_9FUNG (ACB domain-containing protein n=1 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068S1S2_9FUNG)

HSP 1 Score: 71.2 bits (173), Expect = 1.640e-14
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 QQLDLYGLYKQASLGDCRSQRPGLFDPTGRAKWTSWKSCEGLGEIEAMQRY 153
            Q+L+LY L+KQAS G+  +QRPG+FD  GRAKW +WK  EGL  +EA  RY
Sbjct:   37 QRLELYALFKQASTGNVNTQRPGIFDVVGRAKWDAWKQLEGLSTLEAKHRY 87
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BLAST of mRNA_L-elsbetiae_contig1272.2187.1 vs. uniprot
Match: A0A168JBN8_MUCCL (ACB domain-containing protein n=1 Tax=Mucor lusitanicus CBS 277.49 TaxID=747725 RepID=A0A168JBN8_MUCCL)

HSP 1 Score: 70.9 bits (172), Expect = 1.820e-14
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 QQLDLYGLYKQASLGDCRSQRPGLFDPTGRAKWTSWKSCEGLGEIEAMQRY 153
            Q+L+LY  YKQ S GD  +QRPG+FD  GRAKW +WK  EG+ E+EA  RY
Sbjct:   39 QKLELYAFYKQVSHGDIDTQRPGIFDVVGRAKWDAWKRLEGISEMEAKHRY 89
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BLAST of mRNA_L-elsbetiae_contig1272.2187.1 vs. uniprot
Match: A0A163AS07_PHYB8 (ACB domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A163AS07_PHYB8)

HSP 1 Score: 70.5 bits (171), Expect = 1.860e-14
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 QQLDLYGLYKQASLGDCRSQRPGLFDPTGRAKWTSWKSCEGLGEIEAMQRY 153
            Q+L+LY LYKQ S G   +QRPG+FD  GRAKW +WK  EGL ++EA  RY
Sbjct:   37 QKLELYALYKQVSHGSIDTQRPGIFDVVGRAKWDAWKKLEGLNDLEAKHRY 87
[Close]
BLAST of mRNA_L-elsbetiae_contig1272.2187.1 vs. uniprot
Match: B3RQT0_TRIAD (ACB domain-containing protein n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3RQT0_TRIAD)

HSP 1 Score: 69.7 bits (169), Expect = 2.300e-14
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    7 LDLYGLYKQASLGDCRSQRPGLFDPTGRAKWTSWKSCEGLGEIEAMQRYRRVAEAV 174
            L++YGLYKQA++GDC + RPG FD   RAKW SW S +G+   EA Q Y + A ++
Sbjct:   25 LEIYGLYKQATVGDCNTDRPGFFDQKNRAKWDSWNSKKGMSTEEAKQAYIKKANSL 80
[Close]
BLAST of mRNA_L-elsbetiae_contig1272.2187.1 vs. uniprot
Match: A0A3Q2YPH6_HIPCM (Acyl-CoA binding domain containing 7 n=2 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q2YPH6_HIPCM)

HSP 1 Score: 69.7 bits (169), Expect = 2.750e-14
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    7 LDLYGLYKQASLGDCRSQRPGLFDPTGRAKWTSWKSCEGLGEIEAMQRYRRVAE 168
            LDLYGLYKQA +GD  ++RPGLFD  G+AKW +W S +G+ + EAM  Y  +A+
Sbjct:   27 LDLYGLYKQAVVGDINTERPGLFDMKGKAKWDAWNSRKGMSKDEAMSAYIALAK 80
[Close]
BLAST of mRNA_L-elsbetiae_contig1272.2187.1 vs. uniprot
Match: A0A369RW52_9METZ (Putative acyl-CoA-binding protein n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369RW52_9METZ)

HSP 1 Score: 69.7 bits (169), Expect = 4.350e-14
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    7 LDLYGLYKQASLGDCRSQRPGLFDPTGRAKWTSWKSCEGLGEIEAMQRYRRVAEAV 174
            L++YGLYKQA++GDC + RPG FD   RAKW SW S +G+   EA Q Y + A ++
Sbjct:   50 LEIYGLYKQATVGDCNTDRPGFFDQKNRAKWDSWNSKKGMSTEEAKQAYIKKANSL 105
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1272.2187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C1MR62_MICPC1.400e-1650.00Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
K8ERQ6_9CHLO4.110e-1651.72Acyl-CoA-binding protein n=1 Tax=Bathycoccus prasi... [more]
A0A6P6Y108_DERPT6.120e-1550.00acyl-CoA-binding protein-like n=1 Tax=Dermatophago... [more]
A0A293M2U1_ORNER1.440e-1455.10Acyl-CoA-binding protein (Fragment) n=1 Tax=Ornith... [more]
A0A068S1S2_9FUNG1.640e-1458.82ACB domain-containing protein n=1 Tax=Lichtheimia ... [more]
A0A168JBN8_MUCCL1.820e-1458.82ACB domain-containing protein n=1 Tax=Mucor lusita... [more]
A0A163AS07_PHYB81.860e-1458.82ACB domain-containing protein n=1 Tax=Phycomyces b... [more]
B3RQT0_TRIAD2.300e-1451.79ACB domain-containing protein n=1 Tax=Trichoplax a... [more]
A0A3Q2YPH6_HIPCM2.750e-1455.56Acyl-CoA binding domain containing 7 n=2 Tax=Hippo... [more]
A0A369RW52_9METZ4.350e-1451.79Putative acyl-CoA-binding protein n=1 Tax=Trichopl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1272contigL-elsbetiae_contig1272:21216..22050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.1
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog38833.XP_003058249.1
Preferred nameACBP2
KEGG koko:K08762
KEGG Pathwayko03320,map03320
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000062,GO:0000166,GO:0001666,GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006810,GO:0006869,GO:0006950,GO:0008150,GO:0008289,GO:0009266,GO:0009314,GO:0009409,GO:0009416,GO:0009628,GO:0009642,GO:0009646,GO:0010876,GO:0016020,GO:0017076,GO:0030554,GO:0031210,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0033218,GO:0036094,GO:0036293,GO:0043167,GO:0043168,GO:0043169,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050662,GO:0050826,GO:0050896,GO:0050997,GO:0051179,GO:0051234,GO:0070405,GO:0070482,GO:0071702,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901567,GO:1901681
EggNOG free text desc.Acyl CoA binding protein
EggNOG OGs34IGT@3041,37VEJ@33090,COG4281@1,KOG0817@2759
COG Functional cat.I
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815461.088573-CDS-L-elsbetiae_contig1272:21215..213131622815461.088573-CDS-L-elsbetiae_contig1272:21215..21313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1272 21216..21313 +
1691682908.773248-CDS-L-elsbetiae_contig1272:21215..213131691682908.773248-CDS-L-elsbetiae_contig1272:21215..21313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1272 21216..21313 +
1622815461.1026092-CDS-L-elsbetiae_contig1272:21974..220501622815461.1026092-CDS-L-elsbetiae_contig1272:21974..22050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1272 21975..22050 +
1691682908.7866316-CDS-L-elsbetiae_contig1272:21974..220501691682908.7866316-CDS-L-elsbetiae_contig1272:21974..22050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1272 21975..22050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1272.2187.1prot_L-elsbetiae_contig1272.2187.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1272 21216..22050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1272.2187.1

>prot_L-elsbetiae_contig1272.2187.1 ID=prot_L-elsbetiae_contig1272.2187.1|Name=mRNA_L-elsbetiae_contig1272.2187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=58bp
QQLDLYGLYKQASLGDCRSQRPGLFDPTGRAKWTSWKSCEGLGEIEAMQR
YRRVAEAV
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mRNA from alignment at L-elsbetiae_contig1272:21216..22050+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1272.2187.1 ID=mRNA_L-elsbetiae_contig1272.2187.1|Name=mRNA_L-elsbetiae_contig1272.2187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=835bp|location=Sequence derived from alignment at L-elsbetiae_contig1272:21216..22050+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCAACTCGATCTGTACGGGCTGTACAAGCAGGCATCCCTCGGGGACTG
CCGGTCGCAGCGGCCTGGCCTGTTCGACCCCACCGGACGCGCAAAGTGGT
ACGCAGACCTGCTGCTCTGTGGGCGTGCACTCTTCTATTCGTTTGACGCC
GCTTTTTGTTTCAACGGTTTCTCGTTTTTTGACAACCCGCGTTATTCGTT
TTACGTCGTTTCCAAAATCTTTTTCGCGCTAGTTTAGTTTTGTCGTGCTG
TACTCCTGCTTGTGGCACGGATTTTTCGCGTTCATTGATTTCTCTCAAAA
GGCTCAAGTACCAATAGCTGCTGAACAAATTCTGACGGGCATTTTAGACG
TCCCGGACTGTCAAGGTTTTAGCACATTCCGCGCTGGTTTAGTTTTTGTC
GTGCTGTACTCCTGCTTGTGGCACGGCCTTTTGGTGTGACCGTGGAGTTC
CCTAAAAAGGCTCAAGCACCATTAGCTGCTGAGCAGATTCTGACCCGCAT
TTTGGAGGTCCTGGGCTGTCGAGACTTTCTTCGCTCCACGTTCAGTGGTC
GCACTCTTGTAAATGAATAGATGGTCTGTTTTTTTCTGCTGTCGGATGCA
AACCCTTGGCAATATGCGTGAAATTCGTCTCGCTTTCTACCTCCACCCCC
CCAACATGGTTGAGACAGAGGTTTCGCCCTTACGGCCAGACTCGAAAATC
ACCCCTGGGTTCATCTCTGACAAGCCCAACAACCGCCGCGTGTTGTTAAA
TATCGGCAGGACTTCTTGGAAATCGTGTGAAGGACTTGGCGAAATCGAGG
CAATGCAGCGCTACCGCCGGGTGGCAGAGGCGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1272:21216..22050+

>mRNA_L-elsbetiae_contig1272.2187.1 ID=mRNA_L-elsbetiae_contig1272.2187.1|Name=mRNA_L-elsbetiae_contig1272.2187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=348bp|location=Sequence derived from alignment at L-elsbetiae_contig1272:21216..22050+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCAACTCGATCTGTACGGGCTGTACAAGCAGGCATCCCTCGGGGACTG
CCGGTCGCAGCGGCCTGGCCTGTTCGACCCCACCGGACGCGCAAAGTGCA
GCAACTCGATCTGTACGGGCTGTACAAGCAGGCATCCCTCGGGGACTGCC
GGTCGCAGCGGCCTGGCCTGTTCGACCCCACCGGACGCGCAAAGTGGACT
TCTTGGAAATCGTGTGAAGGACTTGGCGAAATCGAGGCAATGCAGCGCTA
CCGCCGGGTGGCAGAGGCGGTGGACTTCTTGGAAATCGTGTGAAGGACTT
GGCGAAATCGAGGCAATGCAGCGCTACCGCCGGGTGGCAGAGGCGGTG
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