mRNA_L-elsbetiae_contig12683.2162.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12683.2162.1
Unique NamemRNA_L-elsbetiae_contig12683.2162.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12683.2162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12683contigL-elsbetiae_contig12683:614..1165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size553
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815457.8041255-UTR-L-elsbetiae_contig12683:613..8441622815457.8041255-UTR-L-elsbetiae_contig12683:613..844Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12683 614..844 +
1691682907.4802508-UTR-L-elsbetiae_contig12683:613..8441691682907.4802508-UTR-L-elsbetiae_contig12683:613..844Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12683 614..844 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815457.817145-CDS-L-elsbetiae_contig12683:844..11651622815457.817145-CDS-L-elsbetiae_contig12683:844..1165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12683 845..1165 +
1691682907.4900272-CDS-L-elsbetiae_contig12683:844..11651691682907.4900272-CDS-L-elsbetiae_contig12683:844..1165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12683 845..1165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12683.2162.1prot_L-elsbetiae_contig12683.2162.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12683 845..1165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12683.2162.1

>prot_L-elsbetiae_contig12683.2162.1 ID=prot_L-elsbetiae_contig12683.2162.1|Name=mRNA_L-elsbetiae_contig12683.2162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MFFPTIQHEGKSCATPRAAPISITTPLFYYSIGCSEVSRKQRKILFDTRP
PQYTEKVDISRYMCNDTCEVKSSSSLLRHRNTRGHSESEGDHAGGGMGSA
TARDLYR
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mRNA from alignment at L-elsbetiae_contig12683:614..1165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12683.2162.1 ID=mRNA_L-elsbetiae_contig12683.2162.1|Name=mRNA_L-elsbetiae_contig12683.2162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig12683:614..1165+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGAATTTAGGAGAGACATGCGAGCACGTTGCGTCAAAGGTTGGACAGG
CGTTTCACTTTCCAAACGTTGGGTGGCCCTCCCAAGGTGCCCCAAGGTAC
CCCTTTGGCCACCTGTGTAGTCTACATGTTGATGAGGTTCTCTGTGAAAC
ATACATACGTACATACGTACAAACTATGGTTGGGGTTGGGGCTAAAATAT
AAGGCTCAGCGTCCACCCAAGAGGGCGAAACATGTTCTTTCCGACGATAC
AACATGAAGGAAAATCCTGTGCTACCCCTCGTGCAGCACCCATCTCGATC
ACGACTCCTTTATTTTACTACTCTATTGGTTGTAGCGAGGTTTCGAGGAA
GCAGAGGAAGATTCTCTTTGATACCAGACCCCCGCAATATACAGAGAAAG
TTGACATTTCGCGGTACATGTGTAATGACACATGTGAGGTGAAATCAAGC
TCGTCCCTTCTCCGCCACAGGAACACACGGGGCCACTCCGAGAGTGAGGG
AGACCACGCCGGCGGTGGAATGGGATCAGCAACTGCACGCGATTTGTACC
GC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12683:614..1165+

>mRNA_L-elsbetiae_contig12683.2162.1 ID=mRNA_L-elsbetiae_contig12683.2162.1|Name=mRNA_L-elsbetiae_contig12683.2162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig12683:614..1165+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCTTTCCGACGATACAACATGAAGGAAAATCCTGTGCTACCCCTCG
TGCAGCACCCATCTCGATCACGACTCCTTTATTTTACTACTCTATTGGTT
GTAGCGAGGTTTCGAGGAAGCAGAGGAAGATTCTCTTTGATACCAGACCC
CCGCAATATACAGAGAAAGTTGACATTTCGCGGTACATGTGTAATGACAC
ATGTGAGGTGAAATCAAGCTCGTCCCTTCTCCGCCACAGGAACACACGGG
GCCACTCCGAGAGTGAGGGAGACCACGCCGGCGGTGGAATGGGATCAGCA
ACTGCACGCGATTTGTACCGCATGTTCTTTCCGACGATACAACATGAAGG
AAAATCCTGTGCTACCCCTCGTGCAGCACCCATCTCGATCACGACTCCTT
TATTTTACTACTCTATTGGTTGTAGCGAGGTTTCGAGGAAGCAGAGGAAG
ATTCTCTTTGATACCAGACCCCCGCAATATACAGAGAAAGTTGACATTTC
GCGGTACATGTGTAATGACACATGTGAGGTGAAATCAAGCTCGTCCCTTC
TCCGCCACAGGAACACACGGGGCCACTCCGAGAGTGAGGGAGACCACGCC
GGCGGTGGAATGGGATCAGCAACTGCACGCGATTTGTACCGC
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