mRNA_L-elsbetiae_contig12677.2157.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12677.2157.1
Unique NamemRNA_L-elsbetiae_contig12677.2157.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12677.2157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12677contigL-elsbetiae_contig12677:753..1262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size512
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815457.1627238-CDS-L-elsbetiae_contig12677:752..11421622815457.1627238-CDS-L-elsbetiae_contig12677:752..1142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12677 753..1142 +
1691682907.092779-CDS-L-elsbetiae_contig12677:752..11421691682907.092779-CDS-L-elsbetiae_contig12677:752..1142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12677 753..1142 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815457.1784706-UTR-L-elsbetiae_contig12677:1142..12621622815457.1784706-UTR-L-elsbetiae_contig12677:1142..1262Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12677 1143..1262 +
1691682907.1029975-UTR-L-elsbetiae_contig12677:1142..12621691682907.1029975-UTR-L-elsbetiae_contig12677:1142..1262Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12677 1143..1262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12677.2157.1prot_L-elsbetiae_contig12677.2157.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12677 753..1142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12677.2157.1

>prot_L-elsbetiae_contig12677.2157.1 ID=prot_L-elsbetiae_contig12677.2157.1|Name=mRNA_L-elsbetiae_contig12677.2157.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
LLLLLLRRCPFPARSLTPFRSFEAAAGPDPDPLGRLVSSLDLFPSDGPSR
LVLVPPLPFLPARAEPPSDEEEDELEEELEEEDDEDELDDADLPRFLLLS
DIARWHTQGARVRRGRRSLGVRKTAAVAN*
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mRNA from alignment at L-elsbetiae_contig12677:753..1262+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12677.2157.1 ID=mRNA_L-elsbetiae_contig12677.2157.1|Name=mRNA_L-elsbetiae_contig12677.2157.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig12677:753..1262+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCTGCTGCTGCTGCTGCGACGCTGTCCTTTTCCAGCTCGATCACTTAC
CCCCTTCCGGTCCTTCGAAGCTGCCGCTGGTCCCGACCCTGACCCTTTGG
GGCGTTTGGTGTCTTCCCTCGACCTCTTCCCGTCGGACGGCCCATCTCGT
TTGGTGCTCGTGCCACCGCTTCCCTTCTTGCCCGCGCGAGCGGAACCCCC
ATCCGACGAAGAGGAGGACGAGCTGGAGGAAGAGCTGGAGGAGGAGGACG
ACGAGGACGAACTCGATGATGCCGACCTCCCGCGTTTTCTCCTGCTCTCA
GACATTGCGCGTTGGCACACGCAAGGGGCAAGGGTCAGGCGTGGGCGGCG
CTCCTTGGGTGTAAGAAAGACCGCTGCGGTTGCAAATTAAAATTGGTGCG
AGGAAGCGGTAGATCCTCTGGTCCGATCGAGAGGTGCTATCTTCACACTC
TCCTACAAGATGTTTAAGATGATCTCCCTCGCCTGGCCCCGTCTCCTTGC
CCTTTCGTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12677:753..1262+

>mRNA_L-elsbetiae_contig12677.2157.1 ID=mRNA_L-elsbetiae_contig12677.2157.1|Name=mRNA_L-elsbetiae_contig12677.2157.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig12677:753..1262+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCTGCTGCTGCTGCTGCGACGCTGTCCTTTTCCAGCTCGATCACTTAC
CCCCTTCCGGTCCTTCGAAGCTGCCGCTGGTCCCGACCCTGACCCTTTGG
GGCGTTTGGTGTCTTCCCTCGACCTCTTCCCGTCGGACGGCCCATCTCGT
TTGGTGCTCGTGCCACCGCTTCCCTTCTTGCCCGCGCGAGCGGAACCCCC
ATCCGACGAAGAGGAGGACGAGCTGGAGGAAGAGCTGGAGGAGGAGGACG
ACGAGGACGAACTCGATGATGCCGACCTCCCGCGTTTTCTCCTGCTCTCA
GACATTGCGCGTTGGCACACGCAAGGGGCAAGGGTCAGGCGTGGGCGGCG
CTCCTTGGGTGTAAGAAAGACCGCTGCGGTTGCAAATTAACTGCTGCTGC
TGCTGCTGCGACGCTGTCCTTTTCCAGCTCGATCACTTACCCCCTTCCGG
TCCTTCGAAGCTGCCGCTGGTCCCGACCCTGACCCTTTGGGGCGTTTGGT
GTCTTCCCTCGACCTCTTCCCGTCGGACGGCCCATCTCGTTTGGTGCTCG
TGCCACCGCTTCCCTTCTTGCCCGCGCGAGCGGAACCCCCATCCGACGAA
GAGGAGGACGAGCTGGAGGAAGAGCTGGAGGAGGAGGACGACGAGGACGA
ACTCGATGATGCCGACCTCCCGCGTTTTCTCCTGCTCTCAGACATTGCGC
GTTGGCACACGCAAGGGGCAAGGGTCAGGCGTGGGCGGCGCTCCTTGGGT
GTAAGAAAGACCGCTGCGGTTGCAAATTAA
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