mRNA_L-elsbetiae_contig10151.203.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10151.203.1
Unique NamemRNA_L-elsbetiae_contig10151.203.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10151.203.1 vs. uniprot
Match: A0A6H5JB41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB41_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 9.650e-57
Identity = 119/220 (54.09%), Postives = 145/220 (65.91%), Query Frame = 2 
Query:  386 TIPGKVGAAAIQKQIDSIRTRRTRG-GDSSP--GGRIHWATSKASGDRAAAAAAISALPRAVWVLIFGQGSSQF-SSGCAQRGLYCLWSKGLNSAVAFQERDGALRYAFKLRARGLGVPGPTRVAMKDLQRFCSDNGFGVWVVPADVVPEAPQRTKNVMGFDPAAGDSRRSMQGXXXXXXXXXXXXXXXXXXXXXXERSVLTPEDVRKWRADFERLYAQD 1033
            +IP  VG+AAI++QIDSI+  R+RG G  +P  G  I W  S  S  RA      + LPRAVWVL+F QGS  F SS   QRGLYCLWSKG NSA+AF+ER+GALRYAFKL+ +GLG+P PTRV+M DLQRFC D+ FG+ ++PADVVPEAP++TK  +GFDP    S  S  G                         VLTP+D+RKWRA FERLYAQ+
Sbjct:   70 SIPDSVGSAAIRRQIDSIK--RSRGAGKRTPRQGESIRWVASTESEHRARP----TLLPRAVWVLLFSQGSGSFGSSSEPQRGLYCLWSKGTNSALAFEEREGALRYAFKLKEKGLGIPTPTRVSMTDLQRFCLDHSFGIRMIPADVVPEAPRKTKKDLGFDPLNLTS--SPHGRRDAGEDAGP---------------VLTPDDIRKWRAKFERLYAQE 266
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BLAST of mRNA_L-elsbetiae_contig10151.203.1 vs. uniprot
Match: D8LLX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX3_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 5.120e-31
Identity = 74/132 (56.06%), Postives = 92/132 (69.70%), Query Frame = 2 
Query:  386 TIPGKVGAAAIQKQIDSIRT-----RRTRGGDSSPGGRIHWATSKASGDRAAAAAAISALPRAVWVLIFGQGSSQFSSGCA-QRGLYCLWSKGLNSAVAFQERDGALRYAFKLRARGLGVPGPTRVAMKDLQ 763
            +IP +VG+AAI+++IDSI+      +RT   D S    I W  S  SG RA +    + LPRAVWVLIF QGS  FSS    QRGLYCLWSKG NSA+AF+ER+GALRYAFKL+ +GLG+P PTRV+M   +
Sbjct:   22 SIPDRVGSAAIRRRIDSIKRSRGAGKRTPRQDES----IRWVASTESGHRARS----TLLPRAVWVLIFNQGSGSFSSSSEPQRGLYCLWSKGTNSALAFEEREGALRYAFKLKEKGLGIPRPTRVSMTSFE 145
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10151.203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JB41_9PHAE9.650e-5754.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLX3_ECTSI5.120e-3156.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10151contigL-elsbetiae_contig10151:2699..7025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.1
Seed ortholog evalue1.5e-06
Seed eggNOG ortholog251221.35212229
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Alternative locus ID
EggNOG OGs1G70P@1117,COG0457@1,COG0457@2
COG Functional cat.S
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionProtein of unknown function DUF3110
Ec32 orthologEc-14_002010.1
Exons4
Model size2130
Cds size663
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10151.203.1prot_L-elsbetiae_contig10151.203.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10151 3760..5934 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815246.422809-UTR-L-elsbetiae_contig10151:2698..30431622815246.422809-UTR-L-elsbetiae_contig10151:2698..3043Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10151 2699..3043 +
1691682793.721879-UTR-L-elsbetiae_contig10151:2698..30431691682793.721879-UTR-L-elsbetiae_contig10151:2698..3043Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10151 2699..3043 +
1622815246.432991-UTR-L-elsbetiae_contig10151:3728..37591622815246.432991-UTR-L-elsbetiae_contig10151:3728..3759Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10151 3729..3759 +
1691682793.7320037-UTR-L-elsbetiae_contig10151:3728..37591691682793.7320037-UTR-L-elsbetiae_contig10151:3728..3759Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10151 3729..3759 +
1622815246.6427896-UTR-L-elsbetiae_contig10151:5934..70251622815246.6427896-UTR-L-elsbetiae_contig10151:5934..7025Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10151 5935..7025 +
1691682793.7690065-UTR-L-elsbetiae_contig10151:5934..70251691682793.7690065-UTR-L-elsbetiae_contig10151:5934..7025Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10151 5935..7025 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815246.442551-CDS-L-elsbetiae_contig10151:3759..39211622815246.442551-CDS-L-elsbetiae_contig10151:3759..3921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10151 3760..3921 +
1691682793.7405925-CDS-L-elsbetiae_contig10151:3759..39211691682793.7405925-CDS-L-elsbetiae_contig10151:3759..3921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10151 3760..3921 +
1622815246.5399675-CDS-L-elsbetiae_contig10151:4192..44081622815246.5399675-CDS-L-elsbetiae_contig10151:4192..4408Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10151 4193..4408 +
1691682793.7517047-CDS-L-elsbetiae_contig10151:4192..44081691682793.7517047-CDS-L-elsbetiae_contig10151:4192..4408Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10151 4193..4408 +
1622815246.5490453-CDS-L-elsbetiae_contig10151:5649..59341622815246.5490453-CDS-L-elsbetiae_contig10151:5649..5934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10151 5650..5934 +
1691682793.760245-CDS-L-elsbetiae_contig10151:5649..59341691682793.760245-CDS-L-elsbetiae_contig10151:5649..5934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10151 5650..5934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10151.203.1

>prot_L-elsbetiae_contig10151.203.1 ID=prot_L-elsbetiae_contig10151.203.1|Name=mRNA_L-elsbetiae_contig10151.203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=221bp
MDETIPGKVGAAAIQKQIDSIRTRRTRGGDSSPGGRIHWATSKASGDRAA
AAAAISALPRAVWVLIFGQGSSQFSSGCAQRGLYCLWSKGLNSAVAFQER
DGALRYAFKLRARGLGVPGPTRVAMKDLQRFCSDNGFGVWVVPADVVPEA
PQRTKNVMGFDPAAGDSRRSMQGGGGWGGRGDDMFPSSSSSEEEQERSVL
TPEDVRKWRADFERLYAQDE*
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mRNA from alignment at L-elsbetiae_contig10151:2699..7025+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10151.203.1 ID=mRNA_L-elsbetiae_contig10151.203.1|Name=mRNA_L-elsbetiae_contig10151.203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4327bp|location=Sequence derived from alignment at L-elsbetiae_contig10151:2699..7025+ (Laminarionema elsbetiae ELsaHSoW15)
CACGAGGTCGGGCGTAGGCCGCCGACATTTAGAACATCCATCTACGTGCC
AGCGGTAGGTCCCTGTAGTTCACTCGCTCCCCTTTCGGTTCTCCTCGTCT
ACAATCAGGCATGTTTGATTGTAAGAACGGGTTGATTCAAAGGTAGGTTT
CAGATCCCTTTGCCAACATATATCCAGTCTAGATTCTAGTACTTGTAGCT
GTTCATCCCAAATCGTAAAAACACACGAATCCGTCCGCGTTCCCGTTCGC
AGGATTTGTCGTGCCCTTACCAAGACTCTCAGGGCAGCCCAAGCTTGGGC
AGCCCGTCTGCGTGCGAGCAGTCTCGATGGCGTCAGCAGCTCCAGGTATT
TGTGTTTAATTATGAAAACAATTTTCATTCATTTGTTCATTTTATATCAT
CTACCAATCTACATTGTTTGTGGTGCTTTGGATATGAGTTCGATCTGTGG
ATCCAAGGGGTTACGTGTATGTGTGTGGGTTGTGCGGGTTGATCCTGCGG
AGAGTTAAAGAGTCACCGAGCTCACTACATGTTCTGCTTGTTCTTGCTGT
GTATGTATGTGTATACGTCCCTGCCGTTCTGGGCTAACTCAGTTCCTACA
TTCAACACCAACCGCAAGACGGTGCGGTGGGGCCTCGACTAACACCGGGG
AACTACTGTATGCACTGTTGTCGTATTGTCTGCAACCTGCGTAACCCCCC
TCACCGTAATTGTTGTGCATCGTGGGATGTACGTAGTTGAACGATCAACG
CCTTGCTCTACACATTGCCTGATATAGGGAGTTAGCTAATGGTTCGCGGA
TGGGAAAGTAAGTTCAGCTTTTGACTGATTGCTGTGTCACAAAAAAAGGA
CGCTAGCCCTATCAGAATGGATTTTTGTAAGATGCAGCTTGTTCTGGTTC
CAACCCCATCCACCCCTAGGCCCTACGCCACAAAAGCCATCCGTATACCC
ACCCACAGCAGTAGCTCTTTGCTGACTCTCATCCTAGCGTCCTAACCCTT
GGTATTCCATTTCGCCAATTGAGCAGGCAGCCACAACAACAACAACAACA
ACAACAACAACATGGATGAAACCATCCCAGGCAAGGTCGGGGCCGCCGCC
ATCCAGAAGCAAATCGACTCGATCAGGACGAGGCGAACAAGGGGGGGCGA
CAGCAGCCCAGGGGGCCGCATACACTGGGCTACGTCCAAGGCGTCAGGGG
ACCGCGCGGCAGCAGCGGCGGCGGTAAGGAAAATAAAATAAAAGTGTTTT
AGATAGTATGCAGTCTACTGGATACACCGAACATAGCCCAGAACCATCCA
AGGGCACGAAAGTTCTTTGTCTCTAGAAAGGACATACATACGCAGAGCGA
TTGAACACCTGATCCTCCCGCTTTAGGCGCCACACCTACAAACCCATGTG
CCCCCCCCCCCCCCCCCCCTACTCCCCTTATTTTTTAATCCGAGCCCCCG
AACCTCCACCCAGCTTTTCCCCCCAACGTCCCACCGTACCGCAGATCTCT
GCCCTGCCGCGCGCGGTGTGGGTTCTGATCTTCGGTCAAGGATCGTCGCA
GTTTTCTTCCGGTTGCGCGCAGCGAGGGCTCTATTGCCTTTGGTCCAAGG
GCCTCAACTCCGCCGTGGCCTTTCAAGAGCGCGACGGGGCGCTGCGCTAC
GCGTTCAAGCTCAGGGCCAGGGGGCTCGGCGTCCCGGGCCCTACGCGCGT
CGCAATGAAGGTGAGAGAGAGAGGAACATCAGACGGAGCTCTCTGCTGTT
GCTGTTACGTACTTCCTCTGTCCCATAAGCAAAGGCCCTTATGGGGGGCA
AATCATATCTCGCCAATGGAGTTGCCTATGATGCTTTTGCAATAGATACA
GTTAAGTTTGGCGAAAAGCTAAAGATGAGGTGATGCTCGTGAAGTACAAA
ATTGGAGTCGTACGTGCTGAGAATGAGTGGGTTGAATCATTCGACCAAAT
TGTGGCTGATTTCGGCCGATATTTGACGATTTTGGCCTATTTTCGTAACA
GATGTACTCGGTATCATGCTGACATCCTTTCGTGCGAGGCATAGGCATCG
TCCATCAGGGATGAAGCGGAAGCAAAAAGCAACTTGGGGCGTATTGTAGC
GTTTTTCAGCCATTTTCCGGGTTTTCCATATTCTTCTCTGTTTTCCGGAA
AGGAGCCAAATACGGCCTTTTTAGCCGCCTGTTCTTTATTCGACCGTTCG
TGCATGCAGAGTGGTGCGTGCCAAACACAAAAAAGGGGGTTTCAACTCAA
AAAACACCATTTTTAAGAACAAGTAGATTATTCTACGGCATCAGACACCG
TTGAGGGTCCGTGTAATCCGAAAGGGCCTTTACTTACAGGGACACACGCA
AGGCACCCACTACTTGATGTTTTTGAGCCCTCAGCAGCGTGGCTACCTCG
TACACCCGGGGGTAGGGTGGGGGGGGCATTGTTTTTCCGAACGGACGGCC
ACACTTTTAGAAGGATGGCATCATGCAATAACTACATACCTTATGGAACT
ACTCCATCAGCCGGGATGTACGGAGTGAGCCTGTGCCACTGGTTCCAACT
ATGCTGCACACCTTTTGAGGCGAAAAGAGAAAGAGAGGGTGTTTCCAGAA
GAAAAGTGGGTGGAGGGCAGCATCAATCTCTTTACCAGGGGTGTACACAA
AGATAAGATACAAACATCCGGAAAAAACAACCGCGTTTGGTGTTGCGCGT
GTACAGTATGCGTGCTCACAGTCCCGCCATACAGTAGCGATTCTCTGCTG
CTTTCCACTTCCCACCCGTTCAGCAAGCGGCATCCATTTCCATTTTTTGC
GCGTGACCGTCGCTCACGAGCGAAACCATTCATATGTCTCATCCTTGTTT
ACATAGTTTGTTGTGCGTCGCAGCCTGCTCCGCGTCGTCGATTGTTTCGG
TTCATTTGGCCCCACACCATTCGGACACGACCAACCTTGCGCGACGTGCA
GGACCTGCAGCGCTTTTGCAGCGACAACGGCTTCGGCGTGTGGGTGGTCC
CCGCCGATGTCGTGCCTGAGGCTCCGCAGAGGACTAAGAACGTTATGGGC
TTCGACCCTGCGGCAGGGGATTCGCGAAGATCGATGCAGGGCGGTGGTGG
CTGGGGGGGAAGGGGAGATGATATGTTCCCGTCGTCGTCTTCATCAGAGG
AAGAGCAGGAGAGGTCTGTCTTGACCCCAGAGGACGTACGCAAATGGCGC
GCTGATTTCGAGAGGCTGTATGCGCAGGACGAATGAAGAAGGGACCCACC
AAAGAGTATTGGTTGGTGCATTTCCGACCGAAATAACCTCATATTTAACA
CGAATATATCGGCTGTGTCGGCAGCATGCACAGCATGAAGTATGCAGTGC
TCTTCGAGAGAGAGGGGCCAAGACGGAGAGCTTGCTGGTCATGCCTGTTT
ACATGCGTTGAATGCATATATATGTCACCATAGACGAACTTCCTCGACGC
AACTATGGGTGGGCGTTGGTGCATCATTTCGTACTGCACCCCGTTCCCTC
TCTCTCGCCATCGAGAATTGAAACCCCGGCGTGTCCTCTACGCTAAATAC
AAATCATACATTTTCGTAGTACAAGAGATGCGCCTGCCTGTAGAACCCGA
TAGGCAACACACGGCACAAGGGGAGGATGATGGTGTGTTGTGTAGAGATT
TGAAAGAAAGAGCTGCCGCGCTGTGTTTGATTTGATTGTTGTTCGGTTCA
TGTAAAGAAGGAGAAGGAGCCCAGTTGCAAACGAGCAACCCACTCGCGGC
GTTTGTTTTTGGGGTGGCTGGCGTGTACTTGCAGTGTGTGTGTAGCCGGT
GGGCGAAAATGATACAAAACTCGTGTTGATGTTGTATTTATTCATACAGA
ATAAGGTAAAACGGTGGTTGTGCACTGATGAATAATCTTGGCAACGCAGA
AATTTGACCACATACTTTGCGGGGTGGTTTGTGGTGTGGTGTTGCGCGGA
AAGCGCGTGGTGCGCTTGTGGGGTTTGTTTGACTACATACCAACTTCGTT
CCCTGTCTTTTCATGTATGACCTGTCAAGAAACTCAATGGAGATTGACAG
ATAAAAAAGGGGAGTCTATCTAGTAGTTATGGACCTGGCTGGGTGTGTAT
GTGTGGCAGACTTGGTCGGAAAGAGGAGTTCTATAGACGAGCGGAGGCGG
CGGTGGTTGGTTTTCGTTACAACGTACAGCATCGGAGGTGTAACCTATGT
GGCCTCATTCGGTATCAATACCCAGTAGATCAGATAGTAGGTGGTGTAGT
CTACATTTTACCTGTAGACTTATACATAAGACGTACATATACATACTTTT
TGTACGTAGACTACGTAGGCTATCTAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10151:2699..7025+

>mRNA_L-elsbetiae_contig10151.203.1 ID=mRNA_L-elsbetiae_contig10151.203.1|Name=mRNA_L-elsbetiae_contig10151.203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1326bp|location=Sequence derived from alignment at L-elsbetiae_contig10151:2699..7025+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATGAAACCATCCCAGGCAAGGTCGGGGCCGCCGCCATCCAGAAGCA
AATCGACTCGATCAGGACGAGGCGAACAAGGGGGGGCGACAGCAGCCCAG
GGGGCCGCATACACTGGGCTACGTCCAAGGCGTCAGGGGACCGCGCGGCA
GCAGCGGCGGCGATGGATGAAACCATCCCAGGCAAGGTCGGGGCCGCCGC
CATCCAGAAGCAAATCGACTCGATCAGGACGAGGCGAACAAGGGGGGGCG
ACAGCAGCCCAGGGGGCCGCATACACTGGGCTACGTCCAAGGCGTCAGGG
GACCGCGCGGCAGCAGCGGCGGCGATCTCTGCCCTGCCGCGCGCGGTGTG
GGTTCTGATCTTCGGTCAAGGATCGTCGCAGTTTTCTTCCGGTTGCGCGC
AGCGAGGGCTCTATTGCCTTTGGTCCAAGGGCCTCAACTCCGCCGTGGCC
TTTCAAGAGCGCGACGGGGCGCTGCGCTACGCGTTCAAGCTCAGGGCCAG
GGGGCTCGGCGTCCCGGGCCCTACGCGCGTCGCAATGAAGATCTCTGCCC
TGCCGCGCGCGGTGTGGGTTCTGATCTTCGGTCAAGGATCGTCGCAGTTT
TCTTCCGGTTGCGCGCAGCGAGGGCTCTATTGCCTTTGGTCCAAGGGCCT
CAACTCCGCCGTGGCCTTTCAAGAGCGCGACGGGGCGCTGCGCTACGCGT
TCAAGCTCAGGGCCAGGGGGCTCGGCGTCCCGGGCCCTACGCGCGTCGCA
ATGAAGGACCTGCAGCGCTTTTGCAGCGACAACGGCTTCGGCGTGTGGGT
GGTCCCCGCCGATGTCGTGCCTGAGGCTCCGCAGAGGACTAAGAACGTTA
TGGGCTTCGACCCTGCGGCAGGGGATTCGCGAAGATCGATGCAGGGCGGT
GGTGGCTGGGGGGGAAGGGGAGATGATATGTTCCCGTCGTCGTCTTCATC
AGAGGAAGAGCAGGAGAGGTCTGTCTTGACCCCAGAGGACGTACGCAAAT
GGCGCGCTGATTTCGAGAGGCTGTATGCGCAGGACGAATGAGACCTGCAG
CGCTTTTGCAGCGACAACGGCTTCGGCGTGTGGGTGGTCCCCGCCGATGT
CGTGCCTGAGGCTCCGCAGAGGACTAAGAACGTTATGGGCTTCGACCCTG
CGGCAGGGGATTCGCGAAGATCGATGCAGGGCGGTGGTGGCTGGGGGGGA
AGGGGAGATGATATGTTCCCGTCGTCGTCTTCATCAGAGGAAGAGCAGGA
GAGGTCTGTCTTGACCCCAGAGGACGTACGCAAATGGCGCGCTGATTTCG
AGAGGCTGTATGCGCAGGACGAATGA
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