mRNA_L-elsbetiae_contig9789.18745.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9789.18745.1
Unique NamemRNA_L-elsbetiae_contig9789.18745.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9789.18745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9789contigL-elsbetiae_contig9789:4950..5404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size455
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9789.18745.1prot_L-elsbetiae_contig9789.18745.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9789 5022..5399 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817040.3922813-UTR-L-elsbetiae_contig9789:4949..50211622817040.3922813-UTR-L-elsbetiae_contig9789:4949..5021Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9789 4950..5021 +
1691684002.248831-UTR-L-elsbetiae_contig9789:4949..50211691684002.248831-UTR-L-elsbetiae_contig9789:4949..5021Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9789 4950..5021 +
1622817040.4214177-UTR-L-elsbetiae_contig9789:5399..54041622817040.4214177-UTR-L-elsbetiae_contig9789:5399..5404Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9789 5400..5404 +
1691684002.27544-UTR-L-elsbetiae_contig9789:5399..54041691684002.27544-UTR-L-elsbetiae_contig9789:5399..5404Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9789 5400..5404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817040.4056354-CDS-L-elsbetiae_contig9789:5021..53991622817040.4056354-CDS-L-elsbetiae_contig9789:5021..5399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9789 5022..5399 +
1691684002.2633553-CDS-L-elsbetiae_contig9789:5021..53991691684002.2633553-CDS-L-elsbetiae_contig9789:5021..5399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9789 5022..5399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9789.18745.1

>prot_L-elsbetiae_contig9789.18745.1 ID=prot_L-elsbetiae_contig9789.18745.1|Name=mRNA_L-elsbetiae_contig9789.18745.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
MSGEVDGKCYQKAAALVLVGRLSSPLGPVFARRTVTSALPGIKAGDRQNQ
RRHDHRVKRVEHTCWCGRQKTKVGTKKLRTYHHDLTKPLRLFFLDSILVV
SFATDDARPTDHPWPCHHQETSGQS*
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mRNA from alignment at L-elsbetiae_contig9789:4950..5404+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9789.18745.1 ID=mRNA_L-elsbetiae_contig9789.18745.1|Name=mRNA_L-elsbetiae_contig9789.18745.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=455bp|location=Sequence derived from alignment at L-elsbetiae_contig9789:4950..5404+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCTGTGTTCCTTGCGCCCGAGAAAATTGCGCGAAACATTGTCCGTGGC
CAGCCACCCGAGCTGCAGTTTGATGTCTGGGGAAGTTGATGGCAAGTGCT
ACCAGAAGGCTGCTGCACTAGTGCTTGTTGGAAGGCTTTCGTCACCCCTA
GGACCCGTGTTCGCTCGAAGGACAGTGACATCAGCTCTCCCAGGGATCAA
AGCTGGGGATCGGCAGAACCAGCGGCGGCATGACCATCGTGTGAAGCGTG
TGGAGCACACGTGTTGGTGCGGTAGGCAAAAAACAAAAGTCGGGACAAAA
AAGTTGCGAACGTACCATCACGATTTGACGAAACCCCTCCGATTGTTTTT
TCTCGACAGCATTCTGGTCGTGTCCTTCGCCACCGACGATGCTCGTCCCA
CAGACCACCCTTGGCCATGCCACCATCAGGAAACCTCCGGACAGTCATAA
TCCAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9789:4950..5404+

>mRNA_L-elsbetiae_contig9789.18745.1 ID=mRNA_L-elsbetiae_contig9789.18745.1|Name=mRNA_L-elsbetiae_contig9789.18745.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig9789:4950..5404+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGGGGAAGTTGATGGCAAGTGCTACCAGAAGGCTGCTGCACTAGT
GCTTGTTGGAAGGCTTTCGTCACCCCTAGGACCCGTGTTCGCTCGAAGGA
CAGTGACATCAGCTCTCCCAGGGATCAAAGCTGGGGATCGGCAGAACCAG
CGGCGGCATGACCATCGTGTGAAGCGTGTGGAGCACACGTGTTGGTGCGG
TAGGCAAAAAACAAAAGTCGGGACAAAAAAGTTGCGAACGTACCATCACG
ATTTGACGAAACCCCTCCGATTGTTTTTTCTCGACAGCATTCTGGTCGTG
TCCTTCGCCACCGACGATGCTCGTCCCACAGACCACCCTTGGCCATGCCA
CCATCAGGAAACCTCCGGACAGTCATAAATGTCTGGGGAAGTTGATGGCA
AGTGCTACCAGAAGGCTGCTGCACTAGTGCTTGTTGGAAGGCTTTCGTCA
CCCCTAGGACCCGTGTTCGCTCGAAGGACAGTGACATCAGCTCTCCCAGG
GATCAAAGCTGGGGATCGGCAGAACCAGCGGCGGCATGACCATCGTGTGA
AGCGTGTGGAGCACACGTGTTGGTGCGGTAGGCAAAAAACAAAAGTCGGG
ACAAAAAAGTTGCGAACGTACCATCACGATTTGACGAAACCCCTCCGATT
GTTTTTTCTCGACAGCATTCTGGTCGTGTCCTTCGCCACCGACGATGCTC
GTCCCACAGACCACCCTTGGCCATGCCACCATCAGGAAACCTCCGGACAG
TCATAA
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