mRNA_L-elsbetiae_contig974.18706.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig974.18706.1
Unique NamemRNA_L-elsbetiae_contig974.18706.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig974.18706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig974contigL-elsbetiae_contig974:7197..8165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size969
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig974.18706.1prot_L-elsbetiae_contig974.18706.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig974 7652..8137 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817037.3195047-UTR-L-elsbetiae_contig974:7196..76511622817037.3195047-UTR-L-elsbetiae_contig974:7196..7651Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig974 7197..7651 +
1691683999.9076526-UTR-L-elsbetiae_contig974:7196..76511691683999.9076526-UTR-L-elsbetiae_contig974:7196..7651Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig974 7197..7651 +
1622817037.3420253-UTR-L-elsbetiae_contig974:8137..81651622817037.3420253-UTR-L-elsbetiae_contig974:8137..8165Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig974 8138..8165 +
1691683999.931932-UTR-L-elsbetiae_contig974:8137..81651691683999.931932-UTR-L-elsbetiae_contig974:8137..8165Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig974 8138..8165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817037.3303452-CDS-L-elsbetiae_contig974:7651..81371622817037.3303452-CDS-L-elsbetiae_contig974:7651..8137Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig974 7652..8137 +
1691683999.919494-CDS-L-elsbetiae_contig974:7651..81371691683999.919494-CDS-L-elsbetiae_contig974:7651..8137Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig974 7652..8137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig974.18706.1

>prot_L-elsbetiae_contig974.18706.1 ID=prot_L-elsbetiae_contig974.18706.1|Name=mRNA_L-elsbetiae_contig974.18706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp
MTSTFTPTTCRKRHGTHVCSTTILQNGRLRTAYACRMKKKTPSPCGRQSF
QRRGGHVMPAYMETHTHIYNRSTSTPSKALEPAHVVLMPIRSSPPKKSQI
KILADLGSPLPSPPGLALTERTVSCRVNLLGRRERSSAAKTQHDFPDSLA
VQATQAANSLH*
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mRNA from alignment at L-elsbetiae_contig974:7197..8165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig974.18706.1 ID=mRNA_L-elsbetiae_contig974.18706.1|Name=mRNA_L-elsbetiae_contig974.18706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=969bp|location=Sequence derived from alignment at L-elsbetiae_contig974:7197..8165+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGAATCGAAGCACACACTCTGCTGGACTGTAGGCATGCATACACGGGT
CACGCCTCATGTATGTCGTCAAACTCGCTGCAAGATATCCTCGGGGCCAG
CGTGTACAACCACATGCGACCGTGCACCATCTACATACCAAGACGAGATT
CATAACAGCAGTGCCGATCCAGCAGCGTTGATACGTGTTTTTTATCGATG
CTTTGCAAGCACGCAGTCCATGTGCACGCCTGCAAACCCACCAGCAAAGC
CCAAGGAACGCACCGAATTCCCGCTCGCCCCATATCCCGTCCAAATTCAA
GATCAAGACAACAAGGAACATATTTGTCTCCTCGTTAAGCTTGCCATCCC
ACATCCCATTCCTGTCGTGTCTCGACTACTACACTACTGCTATACTACCA
CGCACGCATCATCCTCAACAGAGGATCCACTCACCACATTTTATTTTTTT
GAGAAATGACTTCCACTTTTACCCCTACGACATGTCGAAAGCGGCATGGT
ACACACGTATGCAGCACTACAATACTTCAAAATGGTAGGTTACGGACGGC
GTATGCATGCCGAATGAAAAAAAAAACTCCAAGTCCATGTGGCAGGCAAT
CCTTCCAAAGGCGTGGCGGGCACGTTATGCCTGCATACATGGAAACCCAC
ACCCACATCTATAACAGGAGTACAAGCACACCGTCAAAGGCGCTTGAACC
CGCTCACGTCGTCTTGATGCCTATTCGTTCCTCGCCTCCAAAAAAGTCTC
AAATAAAAATTCTGGCTGATCTAGGCAGCCCTCTCCCGTCTCCCCCCGGG
TTAGCGTTGACGGAGCGGACGGTATCGTGCCGCGTAAATCTTCTTGGCCG
CCGAGAGAGGTCGTCAGCCGCCAAAACTCAACACGACTTTCCTGACTCTC
TTGCGGTGCAAGCGACACAGGCAGCCAACTCCCTACACTGAGAAAGTTGG
AGGAGAGCGTGTGTATGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig974:7197..8165+

>mRNA_L-elsbetiae_contig974.18706.1 ID=mRNA_L-elsbetiae_contig974.18706.1|Name=mRNA_L-elsbetiae_contig974.18706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig974:7197..8165+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACTTCCACTTTTACCCCTACGACATGTCGAAAGCGGCATGGTACACA
CGTATGCAGCACTACAATACTTCAAAATGGTAGGTTACGGACGGCGTATG
CATGCCGAATGAAAAAAAAAACTCCAAGTCCATGTGGCAGGCAATCCTTC
CAAAGGCGTGGCGGGCACGTTATGCCTGCATACATGGAAACCCACACCCA
CATCTATAACAGGAGTACAAGCACACCGTCAAAGGCGCTTGAACCCGCTC
ACGTCGTCTTGATGCCTATTCGTTCCTCGCCTCCAAAAAAGTCTCAAATA
AAAATTCTGGCTGATCTAGGCAGCCCTCTCCCGTCTCCCCCCGGGTTAGC
GTTGACGGAGCGGACGGTATCGTGCCGCGTAAATCTTCTTGGCCGCCGAG
AGAGGTCGTCAGCCGCCAAAACTCAACACGACTTTCCTGACTCTCTTGCG
GTGCAAGCGACACAGGCAGCCAACTCCCTACACTGAATGACTTCCACTTT
TACCCCTACGACATGTCGAAAGCGGCATGGTACACACGTATGCAGCACTA
CAATACTTCAAAATGGTAGGTTACGGACGGCGTATGCATGCCGAATGAAA
AAAAAAACTCCAAGTCCATGTGGCAGGCAATCCTTCCAAAGGCGTGGCGG
GCACGTTATGCCTGCATACATGGAAACCCACACCCACATCTATAACAGGA
GTACAAGCACACCGTCAAAGGCGCTTGAACCCGCTCACGTCGTCTTGATG
CCTATTCGTTCCTCGCCTCCAAAAAAGTCTCAAATAAAAATTCTGGCTGA
TCTAGGCAGCCCTCTCCCGTCTCCCCCCGGGTTAGCGTTGACGGAGCGGA
CGGTATCGTGCCGCGTAAATCTTCTTGGCCGCCGAGAGAGGTCGTCAGCC
GCCAAAACTCAACACGACTTTCCTGACTCTCTTGCGGTGCAAGCGACACA
GGCAGCCAACTCCCTACACTGA
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