mRNA_L-elsbetiae_contig965.18630.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig965.18630.1
Unique NamemRNA_L-elsbetiae_contig965.18630.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig965.18630.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 2.560e-17
Identity = 49/78 (62.82%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:    1 LVSYSATPEQWKEWLRVPLEHAAARGNLDLFNKLLGAGANGSAGGAGIDALDRDGATPLIWASREGRLSVVKTLLAAG 234
            LVSYSATP+QWKEWLR+PLEHAAARGNL+L + LLGAGA+GSAG  G       G T +  A+  G   VV TLL AG
Sbjct:   20 LVSYSATPQQWKEWLRMPLEHAAARGNLNLVSSLLGAGADGSAGWRGCR-----GRTLIDAAALGGSEPVVSTLLRAG 92
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BLAST of mRNA_L-elsbetiae_contig965.18630.1 vs. uniprot
Match: D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.620e-16
Identity = 50/78 (64.10%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:    1 LVSYSATPEQWKEWLRVPLEHAAARGNLDLFNKLLGAGANGSAGGAGIDALDRDGATPLIWASREGRLSVVKTLLAAG 234
            LVSY ATP+QWKEWLRVPLEHAAARGNL+L N LL AGA+GSAG  G   LDR   T +  A+  G   VV  LL AG
Sbjct:   20 LVSYGATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGADGSAGWRGC--LDR---TLIDAAALGGSEPVVSALLRAG 92
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BLAST of mRNA_L-elsbetiae_contig965.18630.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 5.750e-16
Identity = 48/78 (61.54%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    1 LVSYSATPEQWKEWLRVPLEHAAARGNLDLFNKLLGAGANGSAGGAGIDALDRDGATPLIWASREGRLSVVKTLLAAG 234
            LVS+SATP+QWKEWLRVPLEHAAARGNL+L N LL AGA+GSAG  G       G T +  A+  G   VV  LL AG
Sbjct:   20 LVSHSATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGADGSAGWKGCR-----GRTLIDAAALGGSEPVVSALLRAG 92
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BLAST of mRNA_L-elsbetiae_contig965.18630.1 vs. uniprot
Match: A0A6H5JRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY1_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 5.020e-15
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 LVSYSATPEQWKEWLRVPLEHAAARGNLDLFNKLLGAGANGSAGGAG 141
            LVSYSATP+QWKEWLRVPL+HAAARGNL+L N LL AGA+GSAG  G
Sbjct:   20 LVSYSATPQQWKEWLRVPLKHAAARGNLNLVNSLLEAGADGSAGWKG 66
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BLAST of mRNA_L-elsbetiae_contig965.18630.1 vs. uniprot
Match: D8LQL7_ECTSI (Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQL7_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.480e-14
Identity = 46/81 (56.79%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    1 LVSYSATPEQWKEWLRVPLEHAAARGNLDLFNKLLGAGANGSAGGA----GIDALDRDGA--TPLIWASREGRLSVVKTLL 225
            LV   AT EQWKEWLR PLEHAAA GNLDLF +L+ AGANG AG A    G D   RDG   +PL  A+  G   V+ +LL
Sbjct:   24 LVQREATAEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGANGKAGWALMIAGADPNLRDGRKRSPLHLAAEAGHHRVIGSLL 104
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BLAST of mRNA_L-elsbetiae_contig965.18630.1 vs. uniprot
Match: D7G6Z7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z7_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.630e-14
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 LVSYSATPEQWKEWLRVPLEHAAARGNLDLFNKLLGAGANGSAGGAG 141
            LV   ATPEQWK+WLRVPLEHAAA+GNLDLF +L+ AGA+G +G  G
Sbjct:    7 LVQEEATPEQWKQWLRVPLEHAAAKGNLDLFTRLMDAGADGCSGWRG 53
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BLAST of mRNA_L-elsbetiae_contig965.18630.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.930e-14
Identity = 45/78 (57.69%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    1 LVSYSATPEQWKEWLRVPLEHAAARGNLDLFNKLLGAGANGSAGGAGIDALDRDGATPLIWASREGRLSVVKTLLAAG 234
            L+ + ATPEQW EWLR PLEHAAARGNL L  +LL AGANG AG  G       G T L  A+  G   VV TLLA+G
Sbjct:   20 LLYFGATPEQWAEWLRAPLEHAAARGNLGLVERLLNAGANGGAGWRGCR-----GRTMLDAAALGGNPDVVATLLASG 92
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BLAST of mRNA_L-elsbetiae_contig965.18630.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.600e-14
Identity = 48/78 (61.54%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    1 LVSYSATPEQWKEWLRVPLEHAAARGNLDLFNKLLGAGANGSAGGAGIDALDRDGATPLIWASREGRLSVVKTLLAAG 234
            LVS  ATPEQW EWLRVPLEHAAA GNLDL NKLL AGA+G AG  G    DR   T L  A   G   V+  LL AG
Sbjct:   20 LVSKGATPEQWAEWLRVPLEHAAASGNLDLVNKLLKAGADGEAGWRGCG--DR---TLLDAALSGGNAGVMSALLQAG 92
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BLAST of mRNA_L-elsbetiae_contig965.18630.1 vs. uniprot
Match: A0A6H5JW91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW91_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 3.480e-14
Identity = 38/47 (80.85%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 LVSYSATPEQWKEWLRVPLEHAAARGNLDLFNKLLGAGANGSAGGAG 141
            LVSYSATPEQWKEWL+VPLE AAA GN DLF KLL AGA GSAG  G
Sbjct:   63 LVSYSATPEQWKEWLQVPLERAAALGNRDLFYKLLEAGAYGSAGWRG 109
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BLAST of mRNA_L-elsbetiae_contig965.18630.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 3.570e-14
Identity = 45/78 (57.69%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    1 LVSYSATPEQWKEWLRVPLEHAAARGNLDLFNKLLGAGANGSAGGAGIDALDRDGATPLIWASREGRLSVVKTLLAAG 234
            L+SY ATPEQW+EWLR PLEHAAARG   L  KLL AGA+G AG +G       G T L  A+  G   VV TLL AG
Sbjct:   18 LLSYGATPEQWREWLRAPLEHAAARGEFVLVEKLLNAGADGGAGWSGCR-----GRTLLDAAALGGNPDVVTTLLRAG 90
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig965.18630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS36_ECTSI2.560e-1762.82Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LRS0_ECTSI1.620e-1664.10Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LRZ8_ECTSI5.750e-1661.54Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JRY1_9PHAE5.020e-1580.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQL7_ECTSI1.480e-1456.79Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ecto... [more]
D7G6Z7_ECTSI1.630e-1470.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1F4_9PHAE1.930e-1457.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K513_9PHAE2.600e-1461.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW91_9PHAE3.480e-1480.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBP9_ECTSI3.570e-1457.69Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig965contigL-elsbetiae_contig965:10462..11091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue2.7e-14
Seed eggNOG ortholog2880.D8LS36
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817030.663287-CDS-L-elsbetiae_contig965:10461..105641622817030.663287-CDS-L-elsbetiae_contig965:10461..10564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig965 10462..10564 -
1691683995.2611794-CDS-L-elsbetiae_contig965:10461..105641691683995.2611794-CDS-L-elsbetiae_contig965:10461..10564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig965 10462..10564 -
1622817030.6729186-CDS-L-elsbetiae_contig965:10960..110911622817030.6729186-CDS-L-elsbetiae_contig965:10960..11091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig965 10961..11091 -
1691683995.2735462-CDS-L-elsbetiae_contig965:10960..110911691683995.2735462-CDS-L-elsbetiae_contig965:10960..11091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig965 10961..11091 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig965.18630.1prot_L-elsbetiae_contig965.18630.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig965 10462..11091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig965.18630.1

>prot_L-elsbetiae_contig965.18630.1 ID=prot_L-elsbetiae_contig965.18630.1|Name=mRNA_L-elsbetiae_contig965.18630.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
LVSYSATPEQWKEWLRVPLEHAAARGNLDLFNKLLGAGANGSAGGAGIDA
LDRDGATPLIWASREGRLSVVKTLLAAG
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mRNA from alignment at L-elsbetiae_contig965:10462..11091-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig965.18630.1 ID=mRNA_L-elsbetiae_contig965.18630.1|Name=mRNA_L-elsbetiae_contig965.18630.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig965:10462..11091- (Laminarionema elsbetiae ELsaHSoW15)
CTGGTCTCGTACAGCGCTACACCAGAGCAGTGGAAGGAGTGGCTCCGGGT
GCCGCTGGAGCATGCTGCCGCCCGAGGCAACCTTGACCTCTTCAACAAGC
TGCTCGGGGCCGGGGCTAATGGGAGCGCTGGGTGTAGGGGCTGCCGAGAT
CGTACTCTGCTCGATGCAGCGGCTGTCGGTGGGAACGAGGAGATTGTATC
TGGGCTGCTTGGAGTTGGAGCCCAGCCGGACGTGAAGGTGGTGTCTTGTT
CCTCAAAGAGATCGTCTCTGTACACGGCAACCGTTCTCAGCCATGACGCT
GTCGCCAGACGCTTGGTCGTTGCAGGAGCGGACGTGGACTTTCAGGACCC
TGTGGACAAGTGGTCAGTCCTGAACGAAGCTGCCTGGGGTAGGCATGAGC
AGTTGGTGGCCTACTTGTTGATAGGCGGAGCCGACCCTAACTGTCGGGGT
CGCCGTTACGAAAACTCTCCTCTCCATGATGCGGCCTACCAAGGTTTTGA
CGGTATTGTATCCACTCTGTTGCTCAGAGGAGCGGGCATTGATGCTCTCG
ACCGTGACGGAGCGACACCACTGATTTGGGCATCCAGGGAAGGTCGCCTT
TCTGTCGTGAAGACCCTGCTGGCTGCCGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig965:10462..11091-

>mRNA_L-elsbetiae_contig965.18630.1 ID=mRNA_L-elsbetiae_contig965.18630.1|Name=mRNA_L-elsbetiae_contig965.18630.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig965:10462..11091- (Laminarionema elsbetiae ELsaHSoW15)
CTGGTCTCGTACAGCGCTACACCAGAGCAGTGGAAGGAGTGGCTCCGGGT
GCCGCTGGAGCATGCTGCCGCCCGAGGCAACCTTGACCTCTTCAACAAGC
TGCTCGGGGCCGGGGCTAATGGGAGCGCTGGCTGGTCTCGTACAGCGCTA
CACCAGAGCAGTGGAAGGAGTGGCTCCGGGTGCCGCTGGAGCATGCTGCC
GCCCGAGGCAACCTTGACCTCTTCAACAAGCTGCTCGGGGCCGGGGCTAA
TGGGAGCGCTGGAGGAGCGGGCATTGATGCTCTCGACCGTGACGGAGCGA
CACCACTGATTTGGGCATCCAGGGAAGGTCGCCTTTCTGTCGTGAAGACC
CTGCTGGCTGCCGGTAGGAGCGGGCATTGATGCTCTCGACCGTGACGGAG
CGACACCACTGATTTGGGCATCCAGGGAAGGTCGCCTTTCTGTCGTGAAG
ACCCTGCTGGCTGCCGGT
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