mRNA_L-elsbetiae_contig9638.18616.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9638.18616.1
Unique NamemRNA_L-elsbetiae_contig9638.18616.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9638.18616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9638contigL-elsbetiae_contig9638:3550..4168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size254
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9638.18616.1prot_L-elsbetiae_contig9638.18616.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9638 3550..4154 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817029.619321-CDS-L-elsbetiae_contig9638:3549..36751622817029.619321-CDS-L-elsbetiae_contig9638:3549..3675Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9638 3550..3675 -
1691683994.4824026-CDS-L-elsbetiae_contig9638:3549..36751691683994.4824026-CDS-L-elsbetiae_contig9638:3549..3675Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9638 3550..3675 -
1622817029.6342359-CDS-L-elsbetiae_contig9638:4040..41541622817029.6342359-CDS-L-elsbetiae_contig9638:4040..4154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9638 4041..4154 -
1691683994.4935606-CDS-L-elsbetiae_contig9638:4040..41541691683994.4935606-CDS-L-elsbetiae_contig9638:4040..4154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9638 4041..4154 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817029.647603-UTR-L-elsbetiae_contig9638:4154..41681622817029.647603-UTR-L-elsbetiae_contig9638:4154..4168Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9638 4155..4168 -
1691683994.5059125-UTR-L-elsbetiae_contig9638:4154..41681691683994.5059125-UTR-L-elsbetiae_contig9638:4154..4168Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9638 4155..4168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9638.18616.1

>prot_L-elsbetiae_contig9638.18616.1 ID=prot_L-elsbetiae_contig9638.18616.1|Name=mRNA_L-elsbetiae_contig9638.18616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
MVPGRLPEGAVTPKQQRIDTMITTFAREMEGKGVGRLIRTSVKRAAGRRP
ATSVNFGSNTEVDGLPAWGVFDFADDTDGG
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mRNA from alignment at L-elsbetiae_contig9638:3550..4168-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9638.18616.1 ID=mRNA_L-elsbetiae_contig9638.18616.1|Name=mRNA_L-elsbetiae_contig9638.18616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=619bp|location=Sequence derived from alignment at L-elsbetiae_contig9638:3550..4168- (Laminarionema elsbetiae ELsaHSoW15)
CAGCACGATACCAAATGGTTCCGGGCAGGCTACCCGAAGGTGCCGTCACC
CCAAAGCAGCAGAGGATCGACACCATGATAACTACCTTCGCCCGAGAGAT
GGAGGGCAAAGGCGTGGGCCGACTGATCGTGAGTGCAAACACGCGTAGAC
GGGTCGCAGCAGCACTACTTAGGCATCCATTCATATTCCGACGAAGCACC
GTGTAGCCAGCCCTGACATGTCGCGTGCGGCATTGCGTCTGTATTTGTCT
CCAAGGGCTTTCAGCACCCACCAAGGGGGGGGGGGGGGGGGGGGGGCCCT
CCCACGCCGGGGGGTGTGTGGGGGGGGGGGTGCCAAACACTTTNNNNNNN
NNNGGGGGGGGGGGGGGGGGGGGGGCAGCTTCACTACGGCGTATGTATTA
GGTCCGGGAGGTACTACACATTTCGCTACACGCTATGTAACCCTATCGTT
TTTTTTGTTTACATTACGCCCATCCAACATGTTATGTACGCAGCGAACAA
GCGTCAAGCGGGCAGCCGGCAGGAGGCCCGCCACCTCCGTCAACTTCGGT
TCCAACACGGAAGTTGACGGCCTGCCAGCCTGGGGGGTGTTCGATTTCGC
AGATGATACCGATGGAGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9638:3550..4168-

>mRNA_L-elsbetiae_contig9638.18616.1 ID=mRNA_L-elsbetiae_contig9638.18616.1|Name=mRNA_L-elsbetiae_contig9638.18616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig9638:3550..4168- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTCCGGGCAGGCTACCCGAAGGTGCCGTCACCCCAAAGCAGCAGAG
GATCGACACCATGATAACTACCTTCGCCCGAGAGATGGAGGGCAAAGGCG
TGGGCCGACTGATCATGGTTCCGGGCAGGCTACCCGAAGGTGCCGTCACC
CCAAAGCAGCAGAGGATCGACACCATGATAACTACCTTCGCCCGAGAGAT
GGAGGGCAAAGGCGTGGGCCGACTGATCCGAACAAGCGTCAAGCGGGCAG
CCGGCAGGAGGCCCGCCACCTCCGTCAACTTCGGTTCCAACACGGAAGTT
GACGGCCTGCCAGCCTGGGGGGTGTTCGATTTCGCAGATGATACCGATGG
AGGTCGAACAAGCGTCAAGCGGGCAGCCGGCAGGAGGCCCGCCACCTCCG
TCAACTTCGGTTCCAACACGGAAGTTGACGGCCTGCCAGCCTGGGGGGTG
TTCGATTTCGCAGATGATACCGATGGAGGT
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