mRNA_L-elsbetiae_contig948.18463.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig948.18463.1
Unique NamemRNA_L-elsbetiae_contig948.18463.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig948.18463.1 vs. uniprot
Match: A0A6H5JW11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW11_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 4.920e-7
Identity = 42/89 (47.19%), Postives = 50/89 (56.18%), Query Frame = -3 
Query:  220 DDLERLLSAEGPSPSCSQVSAVAV-NDAAAGVVGVGWGSGLSEATRTEVVGISRAPAADGDGGGAWELMEAWTPCAIGTLPGWSAARLY 483
            DDLERLL  +  S   +     +V +  AAG V     SG  E        + R    +GD G AWEL+EAWTPCAIGTLPG SAARL+
Sbjct:  665 DDLERLLGGDASSSLAAPGGYTSVPSSIAAGAVRE---SGFRE--------VGRPSEVNGDTGRAWELVEAWTPCAIGTLPGSSAARLH 742
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig948.18463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JW11_9PHAE4.920e-747.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig948contigL-elsbetiae_contig948:23655..24755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1091
Cds size924
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig948.18463.1prot_L-elsbetiae_contig948.18463.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig948 23794..24727 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817014.866706-UTR-L-elsbetiae_contig948:23654..237931622817014.866706-UTR-L-elsbetiae_contig948:23654..23793Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig948 23655..23793 +
1691683983.938194-UTR-L-elsbetiae_contig948:23654..237931691683983.938194-UTR-L-elsbetiae_contig948:23654..23793Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig948 23655..23793 +
1622817014.9055138-UTR-L-elsbetiae_contig948:24727..247551622817014.9055138-UTR-L-elsbetiae_contig948:24727..24755Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig948 24728..24755 +
1691683983.9685404-UTR-L-elsbetiae_contig948:24727..247551691683983.9685404-UTR-L-elsbetiae_contig948:24727..24755Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig948 24728..24755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817014.8797185-CDS-L-elsbetiae_contig948:23793..244951622817014.8797185-CDS-L-elsbetiae_contig948:23793..24495Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig948 23794..24495 +
1691683983.948217-CDS-L-elsbetiae_contig948:23793..244951691683983.948217-CDS-L-elsbetiae_contig948:23793..24495Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig948 23794..24495 +
1622817014.8937514-CDS-L-elsbetiae_contig948:24505..247271622817014.8937514-CDS-L-elsbetiae_contig948:24505..24727Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig948 24506..24727 +
1691683983.9584432-CDS-L-elsbetiae_contig948:24505..247271691683983.9584432-CDS-L-elsbetiae_contig948:24505..24727Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig948 24506..24727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig948.18463.1

>prot_L-elsbetiae_contig948.18463.1 ID=prot_L-elsbetiae_contig948.18463.1|Name=mRNA_L-elsbetiae_contig948.18463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=308bp
MYPESPIKNSKHPSTRRASIDFAFANQYRRAADHPGSVPIAHGVHASINS
HAPPPSPSAAGARLMPTTSVRVASLNPDPHPTPTTPAAASLTATADTCEQ
DGEGPSALSNRSRSSRSIIAVLAAAAAVVSALLTLSAPLPPPPMMPRTSA
PETPPASPARPPPPPLPTAPPSIGTAVRSGSLRSPSLPRGPPDAPTSPPS
RLADERLRSPAAPTPVPALLSPRLVGAAVAAAAARQRQRHHRTRSKPRRH
HPGAPRRGHGRPRQAPPSPSARRLRWHRRQGSLGGRGPRGCFARRAWCRR
RHREHVL*
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mRNA from alignment at L-elsbetiae_contig948:23655..24755+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig948.18463.1 ID=mRNA_L-elsbetiae_contig948.18463.1|Name=mRNA_L-elsbetiae_contig948.18463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1101bp|location=Sequence derived from alignment at L-elsbetiae_contig948:23655..24755+ (Laminarionema elsbetiae ELsaHSoW15)
GCCTGCTCTACAAAGCGACCAGGCACTAGGCAAAAGAGTGTTCTTCGTGT
TATCTTACAAGATATGTAGTCCCAAAATCGCCAAAAGAAAAAAAGCGCAT
CCTCCCCACTGCTGGTCTCGGTCTACAACGCAACGCACCATGTACCCTGA
GAGCCCCATCAAGAACTCTAAGCACCCATCCACACGTCGTGCATCCATTG
ATTTCGCTTTTGCCAATCAGTATAGGCGCGCAGCTGACCACCCCGGGAGT
GTGCCTATCGCGCACGGCGTCCATGCCTCCATCAACTCCCACGCACCACC
GCCGTCCCCATCAGCAGCCGGCGCACGACTAATGCCCACGACCTCCGTCC
GTGTAGCCTCGCTCAACCCCGATCCCCATCCCACACCGACCACGCCAGCA
GCAGCATCATTAACCGCTACCGCCGACACCTGTGAGCAAGACGGGGAAGG
CCCTTCGGCGCTAAGCAACCGCTCGAGGTCGTCCAGGTCTATCATTGCCG
TGCTCGCAGCAGCAGCAGCCGTAGTCTCCGCGCTCTTGACACTGTCTGCA
CCGTTACCGCCGCCCCCGATGATGCCCCGAACGTCAGCGCCTGAAACACC
CCCCGCCTCACCCGCACGGCCGCCGCCGCCGCCGCTGCCAACCGCACCAC
CATCCATCGGCACCGCCGTAAGGTCAGGATCACTTCGATCCCCGTCGCTT
CCCAGGGGGCCACCTGATGCACCAACGTCCCCCCCCTCTCGCCTGGCAGA
CGAGAGGCTCCGGTCCCCGGCCGCCCCAACCCCAGTGCCAGCACTACTGT
CACCTCGGCTGGTGGGGGCGGCCGTGGCGGCGGCGGCGGCGGCGGCGGCA
GCGGCAGCGGCAGCGGCATCATCGCACGAGGTCAAAGCCGCGCCGTCACC
ACCCGGGAGCGCCTCGGCGAGGGCACGGCAGACCGCGCCAAGCCCCGCCT
TCGCCCAGTGCGCGCCGTCTACGCTGGCACCGCCGGCAGGGATCGCTGGG
GGGGCGGGGGCCCCGGGGTTGTTTCGCCCGGCGGGCCTGGTGCCGCCGCC
GCCACCGAGAGCATGTGCTCTAACGGCGGCGGGCGCAGGCGCTGCTGCTG
C
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Coding sequence (CDS) from alignment at L-elsbetiae_contig948:23655..24755+

>mRNA_L-elsbetiae_contig948.18463.1 ID=mRNA_L-elsbetiae_contig948.18463.1|Name=mRNA_L-elsbetiae_contig948.18463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1848bp|location=Sequence derived from alignment at L-elsbetiae_contig948:23655..24755+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACCCTGAGAGCCCCATCAAGAACTCTAAGCACCCATCCACACGTCG
TGCATCCATTGATTTCGCTTTTGCCAATCAGTATAGGCGCGCAGCTGACC
ACCCCGGGAGTGTGCCTATCGCGCACGGCGTCCATGCCTCCATCAACTCC
CACGCACCACCGCCGTCCCCATCAGCAGCCGGCGCACGACTAATGCCCAC
GACCTCCGTCCGTGTAGCCTCGCTCAACCCCGATCCCCATCCCACACCGA
CCACGCCAGCAGCAGCATCATTAACCGCTACCGCCGACACCTGTGAGCAA
GACGGGGAAGGCCCTTCGGCGCTAAGCAACCGCTCGAGGTCGTCCAGGTC
TATCATTGCCGTGCTCGCAGCAGCAGCAGCCGTAGTCTCCGCGCTCTTGA
CACTGTCTGCACCGTTACCGCCGCCCCCGATGATGCCCCGAACGTCAGCG
CCTGAAACACCCCCCGCCTCACCCGCACGGCCGCCGCCGCCGCCGCTGCC
AACCGCACCACCATCCATCGGCACCGCCGTAAGGTCAGGATCACTTCGAT
CCCCGTCGCTTCCCAGGGGGCCACCTGATGCACCAACGTCCCCCCCCTCT
CGCCTGGCAGACGAGAGGCTCCGGTCCCCGGCCGCCCCAACCCCAGTGCC
AGCACTACTGTCACCTCGGCTGGTGGGGGCGGCCGTGGCGGCGGCGGCGG
CGATGTACCCTGAGAGCCCCATCAAGAACTCTAAGCACCCATCCACACGT
CGTGCATCCATTGATTTCGCTTTTGCCAATCAGTATAGGCGCGCAGCTGA
CCACCCCGGGAGTGTGCCTATCGCGCACGGCGTCCATGCCTCCATCAACT
CCCACGCACCACCGCCGTCCCCATCAGCAGCCGGCGCACGACTAATGCCC
ACGACCTCCGTCCGTGTAGCCTCGCTCAACCCCGATCCCCATCCCACACC
GACCACGCCAGCAGCAGCATCATTAACCGCTACCGCCGACACCTGTGAGC
AAGACGGGGAAGGCCCTTCGGCGCTAAGCAACCGCTCGAGGTCGTCCAGG
TCTATCATTGCCGTGCTCGCAGCAGCAGCAGCCGTAGTCTCCGCGCTCTT
GACACTGTCTGCACCGTTACCGCCGCCCCCGATGATGCCCCGAACGTCAG
CGCCTGAAACACCCCCCGCCTCACCCGCACGGCCGCCGCCGCCGCCGCTG
CCAACCGCACCACCATCCATCGGCACCGCCGTAAGGTCAGGATCACTTCG
ATCCCCGTCGCTTCCCAGGGGGCCACCTGATGCACCAACGTCCCCCCCCT
CTCGCCTGGCAGACGAGAGGCTCCGGTCCCCGGCCGCCCCAACCCCAGTG
CCAGCACTACTGTCACCTCGGCTGGTGGGGGCGGCCGTGGCGGCGGCGGC
GGCGCGGCAGCGGCAGCGGCATCATCGCACGAGGTCAAAGCCGCGCCGTC
ACCACCCGGGAGCGCCTCGGCGAGGGCACGGCAGACCGCGCCAAGCCCCG
CCTTCGCCCAGTGCGCGCCGTCTACGCTGGCACCGCCGGCAGGGATCGCT
GGGGGGGCGGGGGCCCCGGGGTTGTTTCGCCCGGCGGGCCTGGTGCCGCC
GCCGCCACCGAGAGCATGTGCTCTAACGGCAGCGGCAGCGGCATCATCGC
ACGAGGTCAAAGCCGCGCCGTCACCACCCGGGAGCGCCTCGGCGAGGGCA
CGGCAGACCGCGCCAAGCCCCGCCTTCGCCCAGTGCGCGCCGTCTACGCT
GGCACCGCCGGCAGGGATCGCTGGGGGGGCGGGGGCCCCGGGGTTGTTTC
GCCCGGCGGGCCTGGTGCCGCCGCCGCCACCGAGAGCATGTGCTCTAA
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