mRNA_L-elsbetiae_contig9443.18432.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9443.18432.1
Unique NamemRNA_L-elsbetiae_contig9443.18432.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9443.18432.1 vs. uniprot
Match: D7FUQ7_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUQ7_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 3.690e-6
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 2 
Query:  245 LGRVLLEKESNRGSREYLDESFLWNLMCQVVV--EVCHGRVGK 367
            L RV+   ++ R   EYLDESFLWNLMCQVVV  E CHGR+GK
Sbjct:   90 LARVI---KTRRLRGEYLDESFLWNLMCQVVVALEFCHGRMGK 129
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9443.18432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUQ7_ECTSI3.690e-665.12Protein kinase domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9443contigL-elsbetiae_contig9443:4656..5335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size370
Cds size309
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9443.18432.1prot_L-elsbetiae_contig9443.18432.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9443 4656..5275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817012.1189654-CDS-L-elsbetiae_contig9443:4655..47361622817012.1189654-CDS-L-elsbetiae_contig9443:4655..4736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9443 4656..4736 -
1691683981.8715873-CDS-L-elsbetiae_contig9443:4655..47361691683981.8715873-CDS-L-elsbetiae_contig9443:4655..4736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9443 4656..4736 -
1622817012.1328433-CDS-L-elsbetiae_contig9443:5047..52751622817012.1328433-CDS-L-elsbetiae_contig9443:5047..5275Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9443 5048..5275 -
1691683981.8836873-CDS-L-elsbetiae_contig9443:5047..52751691683981.8836873-CDS-L-elsbetiae_contig9443:5047..5275Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9443 5048..5275 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817012.1456382-UTR-L-elsbetiae_contig9443:5275..53351622817012.1456382-UTR-L-elsbetiae_contig9443:5275..5335Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9443 5276..5335 -
1691683981.8934908-UTR-L-elsbetiae_contig9443:5275..53351691683981.8934908-UTR-L-elsbetiae_contig9443:5275..5335Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9443 5276..5335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9443.18432.1

>prot_L-elsbetiae_contig9443.18432.1 ID=prot_L-elsbetiae_contig9443.18432.1|Name=mRNA_L-elsbetiae_contig9443.18432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MATGMPGRMIGPPQSPQSAPAGQVRRNAVTTAAAAVRLAVNVAVATAVDG
FHARESSRPVPVGPRSTREGEQSRVEGVFGRVFPLEPHVPGGGGGVSRSG
REG
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mRNA from alignment at L-elsbetiae_contig9443:4656..5335-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9443.18432.1 ID=mRNA_L-elsbetiae_contig9443.18432.1|Name=mRNA_L-elsbetiae_contig9443.18432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=680bp|location=Sequence derived from alignment at L-elsbetiae_contig9443:4656..5335- (Laminarionema elsbetiae ELsaHSoW15)
GTCTCACGAATGAGATGGCTGCGCGCGAGGCCATGGGAGACATGAAGATC
GTTGGTGTCCATGGCGACCGGCATGCCAGGGCGCATGATAGGGCCGCCAC
AGTCGCCCCAATCTGCACCGGCCGGGCAGGTGCGAAGAAACGCCGTCACC
ACCGCCGCTGCTGCCGTCAGGCTTGCCGTCAACGTCGCCGTTGCCACTGC
CGTTGATGGATTTCATGCGAGGGAATCGTCTCGGCCTGTGCCAGTTGGGC
CGCGTTCTACTAGAGAAGGAGAGCAATCGCGGGTCGAGGTCGGTTTTTGA
AAGCACGGATGTTTCCACCTCAGAAGGTCAAGAAGTCACGCCATGAAAAT
AATTAAAAATCATTCGATCGGTTGTCTTCATGTATGTGCACAGGTAGCTC
TCGGGGCTTTGGTTTGGTCGACGTCGATTTTAAACCTAGTGAAAGAAGAG
TGCCGGTCTTGAAGTCGACGTCGATTGTTGTGCCCGCAGGCAAGCTACTG
ATGTCGTCGCCCCCCCCCCTCACACGCACGCGCACACCGACTCTTGCGAG
CGCGCCCCCCCCTCTCCCCTCGCCGACGTTGCGCCTTTAAAAATATCAGG
GAGTATTTGGACGAGTCTTTCCTTTGGAACCTCATGTGCCAGGTGGTGGT
GGAGGTGTGTCACGGTCGGGTCGGGAAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9443:4656..5335-

>mRNA_L-elsbetiae_contig9443.18432.1 ID=mRNA_L-elsbetiae_contig9443.18432.1|Name=mRNA_L-elsbetiae_contig9443.18432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig9443:4656..5335- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGACCGGCATGCCAGGGCGCATGATAGGGCCGCCACAGTCGCCCCA
ATCTGCACCGGCCGGGCAGGTGCGAAGAAACGCCGTCACCACCGCCGCTG
CTGCCGTCAGGCTTGCCGTCAACGTCGCCGTTGCCACTGCCGTTGATGGA
TTTCATGCGAGGGAATCGTCTCGGCCTGTGCCAGTTGGGCCGCGTTCTAC
TAGAGAAGGAGAGCAATCGCGGGTCGAGATGGCGACCGGCATGCCAGGGC
GCATGATAGGGCCGCCACAGTCGCCCCAATCTGCACCGGCCGGGCAGGTG
CGAAGAAACGCCGTCACCACCGCCGCTGCTGCCGTCAGGCTTGCCGTCAA
CGTCGCCGTTGCCACTGCCGTTGATGGATTTCATGCGAGGGAATCGTCTC
GGCCTGTGCCAGTTGGGCCGCGTTCTACTAGAGAAGGAGAGCAATCGCGG
GTCGAGGGAGTATTTGGACGAGTCTTTCCTTTGGAACCTCATGTGCCAGG
TGGTGGTGGAGGTGTGTCACGGTCGGGTCGGGAAGGGGGAGTATTTGGAC
GAGTCTTTCCTTTGGAACCTCATGTGCCAGGTGGTGGTGGAGGTGTGTCA
CGGTCGGGTCGGGAAGGG
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