mRNA_L-elsbetiae_contig943.18426.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig943.18426.1
Unique NamemRNA_L-elsbetiae_contig943.18426.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig943.18426.1 vs. uniprot
Match: D8LPQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPQ8_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 1.480e-53
Identity = 113/178 (63.48%), Postives = 126/178 (70.79%), Query Frame = 2 
Query:  134 TPSGAESSGRYKPSGHERSPYHDDNNAAASS--DPSHAQIPLTSMKVPMSHGGLTSSAAYGSGYAED--------SAASVKGDPHQ-QGFGGFGGKFGERSLLSGRSGANRGKARGGRGGGNSLPPGYAPSSGGGVGGVLSSNAFASGHNQNSGNVITGRPSSRVTAPPGGHSTFSLG 634
            T  G + SG  KP G+ R  + DD+  A ++   PS +Q    + KVP+SHGGLTSS+AYGSGY  D         A     DP Q QGFGGFGGKFGERSL++GRS ANRGKAR  RGGG  L PGYAPSSGGGV   LSSNAFASGH+QN GNVITGRPSSRV APPGGHSTFSLG
Sbjct:    4 TRDGVDPSGSQKPGGYRRGAHEDDSVTANNAVYGPSGSQQAPPTSKVPLSHGGLTSSSAYGSGYGGDYKPSSYPRPACHNNTDPRQDQGFGGFGGKFGERSLMTGRSVANRGKAR--RGGGGGLTPGYAPSSGGGVEAALSSNAFASGHSQNCGNVITGRPSSRVIAPPGGHSTFSLG 179
[Close]
BLAST of mRNA_L-elsbetiae_contig943.18426.1 vs. uniprot
Match: A0A836CEI4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.060e-8
Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 2 
Query:  452 RGGGNSLPP-GYAPSSGG--GVGGVLSSNAFASGHNQNSGNVITGRPSSRVTAPPGGHSTFSLG 634
            RG G+S+ P G     GG  G GG +S+N FA G NQN GN IT RP+SRV APPGGHS+FSLG
Sbjct:  178 RGSGDSVAPYGQQQGFGGRFGGGGHVSANVFADGANQNCGNFITDRPTSRVLAPPGGHSSFSLG 241
[Close]
BLAST of mRNA_L-elsbetiae_contig943.18426.1 vs. uniprot
Match: A0A7S2HJG0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HJG0_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.660e-7
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 2 
Query:  518 LSSNAFASGHNQNSGNVITGRPSSRVTAPPGGHSTFSLG 634
            +S+NAFASG N NSGNVITGRPSSRV  PPGG ++ +LG
Sbjct:  104 ISNNAFASGSNMNSGNVITGRPSSRVLNPPGGKTSITLG 142
[Close]
BLAST of mRNA_L-elsbetiae_contig943.18426.1 vs. uniprot
Match: A0A7S1ZUX8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZUX8_TRICV)

HSP 1 Score: 55.8 bits (133), Expect = 1.080e-6
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 2 
Query:  485 APSSGGGVGGVLSSNAFASGHNQNSGNVITGRPSSRVTAPPGGHSTFSLG 634
            APS   G    +SSNA+ASG + NSGNVIT RPSSRV+ PPGG S  +LG
Sbjct:   70 APSYAAGCRSSVSSNAYASGSDMNSGNVITNRPSSRVSQPPGGRSQITLG 119
[Close]
BLAST of mRNA_L-elsbetiae_contig943.18426.1 vs. uniprot
Match: A0A813KMP2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KMP2_POLGL)

HSP 1 Score: 58.2 bits (139), Expect = 1.460e-6
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 2 
Query:  512 GVLSSNAFASGHNQNSGNVITGRPSSRVTAPPGGHSTFSLG 634
            G +SSN +ASG NQN GNV+T +PSSRV APPGG S+FSLG
Sbjct:  260 GPVSSNRYASGGNQNCGNVLTDKPSSRVLAPPGGKSSFSLG 300
[Close]
BLAST of mRNA_L-elsbetiae_contig943.18426.1 vs. uniprot
Match: A0A7S4UJL3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UJL3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.880e-6
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 2 
Query:  518 LSSNAFASGHNQNSGNVITGRPSSRVTAPPGGHSTFSL 631
            +S+N FASG N NSGNVITGRPSSRV  PPGG S+ SL
Sbjct:   92 VSNNKFASGSNMNSGNVITGRPSSRVLNPPGGKSSISL 129
[Close]
BLAST of mRNA_L-elsbetiae_contig943.18426.1 vs. uniprot
Match: A0A1Z5JS04_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JS04_FISSO)

HSP 1 Score: 55.1 bits (131), Expect = 3.110e-6
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:  518 LSSNAFASGHNQNSGNVITGRPSSRVTAPPGGHSTFSL 631
            +SSNAFASG N N   V+TGRP+SRV APPGGH+T  L
Sbjct:  101 ISSNAFASGSNMNGAQVMTGRPTSRVLAPPGGHTTIKL 138
[Close]
BLAST of mRNA_L-elsbetiae_contig943.18426.1 vs. uniprot
Match: A0A7S1YQN2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YQN2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.220e-6
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 2 
Query:  518 LSSNAFASGHNQNSGNVITGRPSSRVTAPPGGHSTFSL 631
            +S+N FASG N NSGNVITGRPSSRV  PPGG S+ SL
Sbjct:  138 VSNNKFASGSNMNSGNVITGRPSSRVLNPPGGKSSISL 175
[Close]
BLAST of mRNA_L-elsbetiae_contig943.18426.1 vs. uniprot
Match: A0A7S4QQ80_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QQ80_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.410e-6
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 2 
Query:  518 LSSNAFASGHNQNSGNVITGRPSSRVTAPPGGHSTFSL 631
            +S+N FASG N NSGNVITGRPSSRV  PPGG S+ SL
Sbjct:  141 VSNNKFASGSNMNSGNVITGRPSSRVLNPPGGKSSISL 178
[Close]
BLAST of mRNA_L-elsbetiae_contig943.18426.1 vs. uniprot
Match: B7G1S5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G1S5_PHATC)

HSP 1 Score: 54.3 bits (129), Expect = 6.300e-6
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 2 
Query:  506 VGGVLSSNAFASGHNQNSGNVITGRPSSRVTAPPGGHSTFSLG 634
            V G +SSNAFASG N N   V+TGRP+SRV APPGG ++++LG
Sbjct:  100 VAGPVSSNAFASGANMNGAQVMTGRPTSRVLAPPGGKTSWTLG 142
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig943.18426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LPQ8_ECTSI1.480e-5363.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CEI4_9STRA3.060e-860.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2HJG0_9STRA4.660e-771.79Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1ZUX8_TRICV1.080e-662.00Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A813KMP2_POLGL1.460e-670.73Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S4UJL3_9STRA1.880e-673.68Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1Z5JS04_FISSO3.110e-668.42Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S1YQN2_9STRA4.220e-673.68Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S4QQ80_9STRA4.410e-673.68Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
B7G1S5_PHATC6.300e-662.79Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig943contigL-elsbetiae_contig943:25006..26866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size637
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig943.18426.1prot_L-elsbetiae_contig943.18426.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig943 25006..26167 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817011.472325-CDS-L-elsbetiae_contig943:25005..253771622817011.472325-CDS-L-elsbetiae_contig943:25005..25377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig943 25006..25377 -
1691683981.3776717-CDS-L-elsbetiae_contig943:25005..253771691683981.3776717-CDS-L-elsbetiae_contig943:25005..25377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig943 25006..25377 -
1622817011.4848285-CDS-L-elsbetiae_contig943:26161..261671622817011.4848285-CDS-L-elsbetiae_contig943:26161..26167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig943 26162..26167 -
1691683981.3950083-CDS-L-elsbetiae_contig943:26161..261671691683981.3950083-CDS-L-elsbetiae_contig943:26161..26167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig943 26162..26167 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817011.497626-UTR-L-elsbetiae_contig943:26167..263781622817011.497626-UTR-L-elsbetiae_contig943:26167..26378Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig943 26168..26378 -
1691683981.408063-UTR-L-elsbetiae_contig943:26167..263781691683981.408063-UTR-L-elsbetiae_contig943:26167..26378Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig943 26168..26378 -
1622817011.5123255-UTR-L-elsbetiae_contig943:26818..268661622817011.5123255-UTR-L-elsbetiae_contig943:26818..26866Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig943 26819..26866 -
1691683981.4178963-UTR-L-elsbetiae_contig943:26818..268661691683981.4178963-UTR-L-elsbetiae_contig943:26818..26866Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig943 26819..26866 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig943.18426.1

>prot_L-elsbetiae_contig943.18426.1 ID=prot_L-elsbetiae_contig943.18426.1|Name=mRNA_L-elsbetiae_contig943.18426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
MKVPMSHGGLTSSAAYGSGYAEDSAASVKGDPHQQGFGGFGGKFGERSLL
SGRSGANRGKARGGRGGGNSLPPGYAPSSGGGVGGVLSSNAFASGHNQNS
GNVITGRPSSRVTAPPGGHSTFSLG*
back to top

mRNA from alignment at L-elsbetiae_contig943:25006..26866-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig943.18426.1 ID=mRNA_L-elsbetiae_contig943.18426.1|Name=mRNA_L-elsbetiae_contig943.18426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1861bp|location=Sequence derived from alignment at L-elsbetiae_contig943:25006..26866- (Laminarionema elsbetiae ELsaHSoW15)
GGCGTACTCTGACTGCAACTACGTACATAAGGTCTCACGTTGACGGAGGT
GTGTAAAATTGCTAGAATTGTTGTTTGAACTGGATCAAAGGGAGATGATT
ACTACTCGCTTGCGATTGATTGCTACTTCTCGGCCGATGCAGCTGCAGTT
CTCGGCTTCGCATCCCTTCCACATGCTGGGAGCTGCGCCCCAGCGCCTAC
CATGGGCATGATGAAACTAAAGTAAAGCCATAGCTAATAATGGTCTCCGC
AGAGTGTCGATAAAAATGAAGACAGCGTGACGAATTGCGGCATTCGAGGT
AGTTGCTCCATCAAGGCCCTAGATCGGAGAATGCCCCACCTTCAGCTCCC
CCTTCAGCTCTCTCCAGAATTTTCCACGAAAAATATTTCTACAGGAGGAC
TCCATGCCCGTGACAACGAGTCAACTTGCATGATATCCAACGTACCCCCG
CCCACCTCCGCGCACGCTCCTCTGATCATCGGCAGCAGCAACGCGGGCTT
GACCTCGGCGCGCTTCACCGACAGTGACAGTGGGCGCTGTATCCCCGGTC
TCGAAAGCCCATACCCTACCCATACCCCGTCCGGGGCAGAAAGCAGTGGG
AGGTACAAGCCCAGCGGGCACGAGAGGAGCCCATACCATGACGACAACAA
CGCTGCGGCCTCGTCCGATCCAAGCCACGCACAAATCCCGCTCACGTCAA
TGAAGGTATGTGGAATAAAAATAAATCCTCCCTAACCCTAGACCATTAGA
TAAAGCCCTAAGTATATGTAGCGAGCAGAGGACCAGGCACACTACCGAAC
CTAAAAAAACAAGTGCTTGGTCCAGAGTTCCGAAATCGACGTTCATTTGC
CCCCGCTATATTTTCAAGCAGCCCTGGCGCCAAAAACGTAAGGTTGTCAC
TGCCGCCCTTAAATAACAATAATATGTACCTCTCTTGCTACATTGACATC
CGATCTGGAGACGAACTTTTAGAGATTAAGGGCGATCCTTGAGAGCTACC
CTTTCTTTTGTTCGCCCAGCCTTGCATTGTTTAAAGGAGATTGTTCGCAA
GTACAGACCAAGTAAGCGCCTCTCCTGCACTGCACATTCAGCCGGCTTTT
ATTTTCTCGTTAACACCTCACATAGCATGTGGAGGGAGCGGAGGGCTCCA
GACTATCTGTGTCCGATCTTTTGTTTTTTGTGCTTTGCGGACCCTTCGGG
TCCATTTTATTTTTTTCGTTTTTCAGTATATGTACCCTTTTTAGGGTAAG
TTATCCTGTGACCACGGGAATCGACCGCGTCGGTGTTGGATTAGTACGGA
CTCTTGGAGGTACTGGATAGAGATATCGGAACGGTTTTTAACGTGAAGAC
AACAACAACGACAACACCGCCCTTCATCCTGCGTTTCTTGGCAGCCCGTC
TGATGATGTCTATCGGATACAGATGCCGGTACAAACCAGACTACGGTAAT
TTCTTAACTTTTTATCGCAACTTTGACTCCATGTAACAGGTACCCATGTC
CCACGGTGGGCTCACGTCCTCCGCCGCATACGGTTCGGGCTACGCGGAAG
ACTCAGCGGCAAGCGTAAAGGGGGATCCTCACCAACAGGGTTTCGGGGGG
TTCGGAGGAAAGTTCGGAGAGCGGAGCCTGCTGAGTGGTAGGAGCGGCGC
CAACAGGGGGAAGGCGAGAGGGGGCCGAGGGGGGGGCAACAGTCTCCCCC
CGGGATACGCTCCGTCCAGCGGAGGGGGTGTGGGGGGCGTGCTCTCCTCG
AACGCTTTCGCCAGCGGGCACAACCAAAACTCCGGAAACGTGATAACCGG
CAGACCGTCTTCAAGAGTTACCGCCCCCCCGGGCGGCCACTCGACCTTCA
GCCTCGGGTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig943:25006..26866-

>mRNA_L-elsbetiae_contig943.18426.1 ID=mRNA_L-elsbetiae_contig943.18426.1|Name=mRNA_L-elsbetiae_contig943.18426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig943:25006..26866- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGATGAAGGTACCCATGTCCCACGGTGGGCTCACGTCCTCCGCCGC
ATACGGTTCGGGCTACGCGGAAGACTCAGCGGCAAGCGTAAAGGGGGATC
CTCACCAACAGGGTTTCGGGGGGTTCGGAGGAAAGTTCGGAGAGCGGAGC
CTGCTGAGTGGTAGGAGCGGCGCCAACAGGGGGAAGGCGAGAGGGGGCCG
AGGGGGGGGCAACAGTCTCCCCCCGGGATACGCTCCGTCCAGCGGAGGGG
GTGTGGGGGGCGTGCTCTCCTCGAACGCTTTCGCCAGCGGGCACAACCAA
AACTCCGGAAACGTGATAACCGGCAGACCGTCTTCAAGAGTTACCGCCCC
CCCGGGCGGCCACTCGACCTTCAGCCTCGGGTAGGTACCCATGTCCCACG
GTGGGCTCACGTCCTCCGCCGCATACGGTTCGGGCTACGCGGAAGACTCA
GCGGCAAGCGTAAAGGGGGATCCTCACCAACAGGGTTTCGGGGGGTTCGG
AGGAAAGTTCGGAGAGCGGAGCCTGCTGAGTGGTAGGAGCGGCGCCAACA
GGGGGAAGGCGAGAGGGGGCCGAGGGGGGGGCAACAGTCTCCCCCCGGGA
TACGCTCCGTCCAGCGGAGGGGGTGTGGGGGGCGTGCTCTCCTCGAACGC
TTTCGCCAGCGGGCACAACCAAAACTCCGGAAACGTGATAACCGGCAGAC
CGTCTTCAAGAGTTACCGCCCCCCCGGGCGGCCACTCGACCTTCAGCCTC
GGGTAG
back to top