mRNA_L-elsbetiae_contig9361.18358.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9361.18358.1
Unique NamemRNA_L-elsbetiae_contig9361.18358.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9361.18358.1 vs. uniprot
Match: D8LG60_ECTSI (Histone deactylase of possible bacterial origin with ankyrin repeats at the N-terminus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG60_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 4.800e-69
Identity = 162/224 (72.32%), Postives = 171/224 (76.34%), Query Frame = 1 
Query:   10 QRGYAAAQAGG-GQRLSMVTPQRAGRIGAGXXXXXXXXXXGVDRRLAPSPPGEGSRKREEMAVAELLANSSRVLPEELDLRNAGKRPHSAPDGGXXXXAA--GLRITNPDDLLGGAASVGATAVAHTPWDGEVDNLPDGFPAAKVRMTPTEEISNDFAETYGNRSGGSGXXXXXXXXXXXXXXXX--AGPQAGGALHRNISQGQVAGALKLIANAKVFRDKKLA 666
            QR YAA  AG   QRLSMVTP R GR GAG          GVDRRLAPSPPGEGSRKREEMAVAELLANSSRV PE  D+RN GKRPHSAPD G  XX    GLRITNPD L    +  G TA+AHTPWDGEV+NLPDG PAAK RMTPTEE+SNDFA+TYG+  G   XXXX  XXXXXXXXXX  A PQAGGALHRNISQGQVAGAL+LIANAK  RD+ LA
Sbjct: 1011 QRHYAAQAAGERAQRLSMVTPVRGGRSGAGGGLG------GVDRRLAPSPPGEGSRKREEMAVAELLANSSRVHPE--DMRNNGKRPHSAPDAGGSXXXXXXGLRITNPDLL----SPSGNTAMAHTPWDGEVNNLPDGLPAAKGRMTPTEEVSNDFAQTYGSSGGXXXXXXXRVXXXXXXXXXXSSAAPQAGGALHRNISQGQVAGALRLIANAKAVRDRNLA 1222
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BLAST of mRNA_L-elsbetiae_contig9361.18358.1 vs. uniprot
Match: A0A6H5K5H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H7_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 3.130e-55
Identity = 142/202 (70.30%), Postives = 152/202 (75.25%), Query Frame = 1 
Query:   19 YAAAQAGG--GQRLSMVTPQRAGRIGAGXXXXXXXXXXGVDRRLAPSPPGEGSRKREEMAVAELLANSSRVLPEELDLRNAGKRPHSAPDGGXXXXAAGLRITNPDDLLGGAASVGATAVAHTPWDGEVDNLPDGFPAAKVRMTPTEEISNDFAETYGN----RSGGSGXXXXXXXXXXXXXXXXAGPQAGGALHRNISQGQ 606
            YA+AQA G   QRLSMVTP R G      XXXXXXXXXGVDRRLAPSPPGEGSRKREEMAVAELLANSSRV P+  D+R  GKRPHSAP  G   X  GLRITNPD L    +  G TA+AHTPWDGEV+NLPDG PAAK RMTPT+E+SNDFA+TYG+          XXXXXXXXXXX     A PQAGGALHRNISQGQ
Sbjct:  534 YASAQAAGERAQRLSMVTPVRGGXXXX--XXXXXXXXXGVDRRLAPSPPGEGSRKREEMAVAELLANSSRVHPD--DMRYIGKRPHSAPGAGGSGXGGGLRITNPDLL----SPSGNTAMAHTPWDGEVNNLPDGLPAAKGRMTPTQEVSNDFAQTYGSGXXXXXXXXXXXXXXXXXXXXANGSSAAPQAGGALHRNISQGQ 727
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9361.18358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LG60_ECTSI4.800e-6972.32Histone deactylase of possible bacterial origin wi... [more]
A0A6H5K5H7_9PHAE3.130e-5570.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9361contigL-elsbetiae_contig9361:1469..4752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score244.6
Seed ortholog evalue5e-62
Seed eggNOG ortholog2880.D8LG60
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,COG0666@1,KOG0724@1,KOG0724@2759,KOG1343@2759,KOG4177@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size751
Cds size750
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9361.18358.1prot_L-elsbetiae_contig9361.18358.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9361 1469..4752 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817005.627143-CDS-L-elsbetiae_contig9361:1468..16121622817005.627143-CDS-L-elsbetiae_contig9361:1468..1612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9361 1469..1612 -
1691683977.079103-CDS-L-elsbetiae_contig9361:1468..16121691683977.079103-CDS-L-elsbetiae_contig9361:1468..1612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9361 1469..1612 -
1622817005.6387231-CDS-L-elsbetiae_contig9361:1908..21181622817005.6387231-CDS-L-elsbetiae_contig9361:1908..2118Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9361 1909..2118 -
1691683977.0952482-CDS-L-elsbetiae_contig9361:1908..21181691683977.0952482-CDS-L-elsbetiae_contig9361:1908..2118Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9361 1909..2118 -
1622817005.6492612-CDS-L-elsbetiae_contig9361:2832..30511622817005.6492612-CDS-L-elsbetiae_contig9361:2832..3051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9361 2833..3051 -
1691683977.107556-CDS-L-elsbetiae_contig9361:2832..30511691683977.107556-CDS-L-elsbetiae_contig9361:2832..3051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9361 2833..3051 -
1622817005.6619654-CDS-L-elsbetiae_contig9361:4575..47521622817005.6619654-CDS-L-elsbetiae_contig9361:4575..4752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9361 4576..4752 -
1691683977.1174955-CDS-L-elsbetiae_contig9361:4575..47521691683977.1174955-CDS-L-elsbetiae_contig9361:4575..4752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9361 4576..4752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9361.18358.1

>prot_L-elsbetiae_contig9361.18358.1 ID=prot_L-elsbetiae_contig9361.18358.1|Name=mRNA_L-elsbetiae_contig9361.18358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=250bp
MNQQRGYAAAQAGGGQRLSMVTPQRAGRIGAGGGGSGGGGDGGVDRRLAP
SPPGEGSRKREEMAVAELLANSSRVLPEELDLRNAGKRPHSAPDGGGGGG
AAGLRITNPDDLLGGAASVGATAVAHTPWDGEVDNLPDGFPAAKVRMTPT
EEISNDFAETYGNRSGGSGGGGSGGGGRSNGNASSAGPQAGGALHRNISQ
GQVAGALKLIANAKVFRDKKLADKAVAAGGAAGAGAPPAGSATAAPKPAT
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mRNA from alignment at L-elsbetiae_contig9361:1469..4752-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9361.18358.1 ID=mRNA_L-elsbetiae_contig9361.18358.1|Name=mRNA_L-elsbetiae_contig9361.18358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3284bp|location=Sequence derived from alignment at L-elsbetiae_contig9361:1469..4752- (Laminarionema elsbetiae ELsaHSoW15)
ATGAATCAGCAGCGCGGTTACGCCGCCGCTCAGGCTGGTGGCGGCCAGCG
GCTGAGCATGGTCACTCCCCAGCGCGCTGGGCGCATCGGTGCCGGCGGCG
GCGGTAGCGGCGGCGGCGGGGACGGCGGCGTCGATCGGCGGCTAGCGCCG
TCGCCTCCCGGGGAGGGATCTAGGAAGGTGCGGTGCGGTGTGGTGTGGTG
TGGTGTGGTGCGGTGCGGTGGTGTGTGTGGTGCGGTGCGGTGCGCGTTTT
GTCTTGGAAGAGGAAGGGCCAGTGAGTGAAAATGGACACTTTTCCACGTT
AGAGGCGGCAGGGAGGGACTCTGTGGGGTTTTGACGGTGTTTACTCTTCA
TCGTACATGATCGTTTTTGTCGTGATGTATATATGTATGTAGAAGTATAA
ATATAAGCTTTGGTCCAGCGCTTTTTTGATAAAACGCAAGCATCGGTCGC
CGATTTACGTACACACATGCAACAGTAGTAGTAGTCGTGCTCTCGCGGGT
TCGTTTTTGCTGACGCGTTTGCTGTTGTGTTGCTCGTGCGCCGAGTGTGG
TGGTATGTGTTGGTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTGTGG
GTCGTCGTCGTGTTGCTCGTGACTGTCTCATATTATTGCCATTGTGTGCG
CCGAGCATGATGATGGTGGCGATGCTGCGGCTGATGCTAATGCTGCTGCT
GCTGCTGCTGCTGTGTTGGGGGGGGGGGGGTCGAGATCTGTGTGACTGTT
CTAGCGGCAGAAATGGCTGGGCTGTGCTCGAGTCTTGTCATGGTCTTTTT
CCTTGATGGATCGATCAGGTTTTAGCTATTTATTGTGTACCTAAATACAT
TAGCATCGACGTCTGACTGTTCGCGTTTTTTTTGTATCCTATTTTCTTGT
TATTTTTGTGTCTGTCGTCCATACCTAGCAATTGTAGTGCACACCTTGAT
TCAGTTGCTCATGTCTCCGGCCTCGCCCTCTTCCCTTAAGCCCGCAAGAG
ATTCAGGAATTATTAGCTAGGAATTATGGAGCACGGCGAGACGTGTGTGC
ATAGACGTGCAATACAAACATACATAGCAATGGTGACATTGACGGCCTCC
AAAAACCCACTGGTTTCGCCTCAAAAATCAGACTGCATCCCCGGATCGCA
GCCTTTGAAAGCCCCCAACCCACGCACGCGCACCCACCCCTTAACTACCC
CACCCCTATCCCATCCCATCCTCTACTATTCTTCACCTGTCGAGAGCCGA
AGCGGGGCGATCCCGTAACGAGTGTAACTACATAAGCGGACTACCTGACC
AAATATAAACCCACACAGAGAGAAAAAACCCAACCACGCCAAAAGTGTAG
TACCTCTAAGTACACCGCAAGGTGTAGTACTCGTCTCCACTTGGGGGGAC
TGTCGCCAAAATAAATGGGAAGGACACACACACACGCGCCTCCTTACAAA
TCTGACCCAGTGTACTCCGACAGAGGGGAGGTGAGAACAACCTATTGTTG
CCCTATTGGCCCCGACCAATTTGACCCAGTATATCCCAACAGAGGGAAGG
GGAGAAAGAGGCTATGATCGCCCTAATGGGCCCCCCGACCAACCTGACCC
GAACGGAGGAAAGAAACATATCCCATGTATGATCGCCCTACAATACATAA
TAGGCCCCGACTACCAACCTGACCCAAATATCAATATTTGCGTCCCGACA
GAGAGAAGAGATGGCTGTGGCCGAGCTGCTGGCCAACAGCAGCAGGGTTC
TTCCGGAGGAACTAGACCTGCGCAACGCCGGGAAGCGGCCCCACAGTGCC
CCCGACGGCGGCGGCGGCGGCGGCGCTGCCGGGCTCCGCATCACGAACCC
TGACGACTTGCTGGGGGGCGCCGCCAGCGTGGGGGCGACGGCGGTGGCGC
ACACGCCGTGGGACGGGGAGGTGAGAGAAAAATAATACGGGGAAGAAGAG
AGGGAGGGGAGGAGAGAAAACATTTTCTATGTACTTGGTCGGACCAATAC
AACAGACATCAATGTTTACGAAACTGTGTTGAAATCTGTCAATTCACCTC
GCGGAGTCCCGTCTCCTGTAGTGTGGGGAGGTAGAGGTTTTGTCTTTGAT
TTCCTGATTTATTTTCAAAGTACAATCAGGTTTGGTTGTGTAGTCCACTC
CCGGGTAAGTTGTTGTTTGTTGTTGTTATTTGTTTGTTGTTTTTTTAATG
GAGTGGGGGGGGGGGGGGGATGTAAGTATCCTCCGCTGCCGGCGTGTTTG
TTGATGAGCACAGCCGTATTAGCCTTCGGACAGCATTGTATATATGTATC
ACGCGCGCTGGTTTCGAGTGGGTCTGAAGATAGCTAGAGGCGTTTTCGTC
TGGTCAGGTCTCGTCGACTAGACCGGGAGCCCCGCTCAGAGGGAGAAGAG
CGACAAAGAGAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGGGAAAGATGGCGGGAGAAACAGAGCGCAAGACAAATACATAAAAA
AAAAACTGTGCTTACAGACACGTGCTTGAACAAAAATCCCGGCTATTTTG
GTGTTTGTTCGTCTCTGCCCCCCCACCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGGCCGCTCTTGCGTTGGATTCGAGGGCAGGTGGACAATCTGCCCG
ACGGGTTCCCGGCCGCGAAGGTCCGCATGACCCCGACCGAGGAGATCTCC
AACGACTTCGCCGAGACCTACGGCAACCGCAGCGGCGGCAGCGGAGGCGG
AGGCAGCGGCGGCGGCGGCCGCAGCAACGGCAACGCGTCCTCGGCCGGCC
CGCAGGCGGGAGGGGCGCTGCACCGCAACATCAGCCAGGGGCAGGTAAGT
TCTACGCCGTGACTGCCTGCCTGCTTAGTTTTTTTTGTTCGGGGGTTGGT
TTGGTTCGGCTGTGACCGCGGGTATCGGCCGCGTCGAGTGCTGGATCAGG
AGGGACAGATTGAGGTACTGGGGAGAGGGGTCGGAACGGTTTTCTGATGT
GAAGATAACAGCGACAACTGTTGGCGCTGCTGTTGCTGCTGATAATGATA
ATGCTAATGATAATGGTGGTTGCGACCCTGCTTTGTACGTACGACCATCG
CTGATAACTCGCATCCCCCCCCCATCCTTCACGCCATCAGGTTGCCGGTG
CCCTAAAATTGATCGCCAACGCTAAGGTCTTTAGAGATAAAAAACTTGCC
GACAAGGCCGTCGCAGCGGGGGGGGCGGCGGGGGCGGGAGCACCGCCGGC
GGGCTCGGCAACGGCAGCGCCCAAGCCAGCAACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9361:1469..4752-

>mRNA_L-elsbetiae_contig9361.18358.1 ID=mRNA_L-elsbetiae_contig9361.18358.1|Name=mRNA_L-elsbetiae_contig9361.18358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1500bp|location=Sequence derived from alignment at L-elsbetiae_contig9361:1469..4752- (Laminarionema elsbetiae ELsaHSoW15)
ATGAATCAGCAGCGCGGTTACGCCGCCGCTCAGGCTGGTGGCGGCCAGCG
GCTGAGCATGGTCACTCCCCAGCGCGCTGGGCGCATCGGTGCCGGCGGCG
GCGGTAGCGGCGGCGGCGGGGACGGCGGCGTCGATCGGCGGCTAGCGCCG
TCGCCTCCCGGGGAGGGATCTAGGAAGATGAATCAGCAGCGCGGTTACGC
CGCCGCTCAGGCTGGTGGCGGCCAGCGGCTGAGCATGGTCACTCCCCAGC
GCGCTGGGCGCATCGGTGCCGGCGGCGGCGGTAGCGGCGGCGGCGGGGAC
GGCGGCGTCGATCGGCGGCTAGCGCCGTCGCCTCCCGGGGAGGGATCTAG
GAAGAGAGAAGAGATGGCTGTGGCCGAGCTGCTGGCCAACAGCAGCAGGG
TTCTTCCGGAGGAACTAGACCTGCGCAACGCCGGGAAGCGGCCCCACAGT
GCCCCCGACGGCGGCGGCGGCGGCGGCGCTGCCGGGCTCCGCATCACGAA
CCCTGACGACTTGCTGGGGGGCGCCGCCAGCGTGGGGGCGACGGCGGTGG
CGCACACGCCGTGGGACGGGGAGAGAGAAGAGATGGCTGTGGCCGAGCTG
CTGGCCAACAGCAGCAGGGTTCTTCCGGAGGAACTAGACCTGCGCAACGC
CGGGAAGCGGCCCCACAGTGCCCCCGACGGCGGCGGCGGCGGCGGCGCTG
CCGGGCTCCGCATCACGAACCCTGACGACTTGCTGGGGGGCGCCGCCAGC
GTGGGGGCGACGGCGGTGGCGCACACGCCGTGGGACGGGGAGGTGGACAA
TCTGCCCGACGGGTTCCCGGCCGCGAAGGTCCGCATGACCCCGACCGAGG
AGATCTCCAACGACTTCGCCGAGACCTACGGCAACCGCAGCGGCGGCAGC
GGAGGCGGAGGCAGCGGCGGCGGCGGCCGCAGCAACGGCAACGCGTCCTC
GGCCGGCCCGCAGGCGGGAGGGGCGCTGCACCGCAACATCAGCCAGGGGC
AGGTGGACAATCTGCCCGACGGGTTCCCGGCCGCGAAGGTCCGCATGACC
CCGACCGAGGAGATCTCCAACGACTTCGCCGAGACCTACGGCAACCGCAG
CGGCGGCAGCGGAGGCGGAGGCAGCGGCGGCGGCGGCCGCAGCAACGGCA
ACGCGTCCTCGGCCGGCCCGCAGGCGGGAGGGGCGCTGCACCGCAACATC
AGCCAGGGGCAGGTTGCCGGTGCCCTAAAATTGATCGCCAACGCTAAGGT
CTTTAGAGATAAAAAACTTGCCGACAAGGCCGTCGCAGCGGGGGGGGCGG
CGGGGGCGGGAGCACCGCCGGCGGGCTCGGCAACGGCAGCGCCCAAGCCA
GCAACAGTTGCCGGTGCCCTAAAATTGATCGCCAACGCTAAGGTCTTTAG
AGATAAAAAACTTGCCGACAAGGCCGTCGCAGCGGGGGGGGCGGCGGGGG
CGGGAGCACCGCCGGCGGGCTCGGCAACGGCAGCGCCCAAGCCAGCAACA
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