mRNA_L-elsbetiae_contig9229.18245.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9229.18245.1
Unique NamemRNA_L-elsbetiae_contig9229.18245.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9229.18245.1 vs. uniprot
Match: B8CGQ2_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CGQ2_THAPS)

HSP 1 Score: 57.8 bits (138), Expect = 1.240e-8
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    7 ERPYHADRTTSRPLCEVKRRRARLVLRWGTTWEALVLF 120
            ERPYH+D T SR L EVK  RARLVLRWGTT E+LVLF
Sbjct:  520 ERPYHSDNTASRLLSEVKHCRARLVLRWGTTLESLVLF 557
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BLAST of mRNA_L-elsbetiae_contig9229.18245.1 vs. uniprot
Match: V4BHB9_LOTGI (Uncharacterized protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BHB9_LOTGI)

HSP 1 Score: 52.0 bits (123), Expect = 1.370e-7
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   10 RPYHADRTTSRPLCEVKRRRARLVLRWGTTWEALVL 117
            RPYH + T+SRP+ EVK+RRARLVL W T WE  VL
Sbjct:   56 RPYHVENTSSRPITEVKQRRARLVLGWVTAWEHRVL 91
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BLAST of mRNA_L-elsbetiae_contig9229.18245.1 vs. uniprot
Match: A0A4C1YSQ9_EUMVA (Uncharacterized protein n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1YSQ9_EUMVA)

HSP 1 Score: 51.6 bits (122), Expect = 2.690e-7
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 FQERPYHADRTTSRPLCEVKRRRARLVLRWGTTWE 105
            F++RPYHA+ T SRP+ EVK+RRAR VL W T WE
Sbjct:   47 FRQRPYHAEYTGSRPITEVKQRRARSVLGWVTAWE 81
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BLAST of mRNA_L-elsbetiae_contig9229.18245.1 vs. uniprot
Match: A0A816YMV4_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816YMV4_9BILA)

HSP 1 Score: 49.7 bits (117), Expect = 4.420e-7
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   10 RPYHADRTTSRPLCEVKRRRARLVLRWGTTWE 105
            RPYH + T+SRP+ EVK+RRARLVL W T WE
Sbjct:    1 RPYHVEYTSSRPITEVKQRRARLVLGWVTAWE 32
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BLAST of mRNA_L-elsbetiae_contig9229.18245.1 vs. uniprot
Match: A0A3S0ZIY3_ELYCH (Uncharacterized protein (Fragment) n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0ZIY3_ELYCH)

HSP 1 Score: 50.1 bits (118), Expect = 9.530e-7
Identity = 24/36 (66.67%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:   10 RPYHADRTTSRPLCEVKRRRARLVLRWGTTWEALVL 117
            RPYH + T SRP+ EVK+RRA LVLRW T WE  VL
Sbjct:   65 RPYHVENTGSRPITEVKQRRAWLVLRWVTAWEHHVL 100
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BLAST of mRNA_L-elsbetiae_contig9229.18245.1 vs. uniprot
Match: A0A3S0Z3S7_ELYCH (Uncharacterized protein (Fragment) n=2 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0Z3S7_ELYCH)

HSP 1 Score: 48.9 bits (115), Expect = 1.460e-6
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:   10 RPYHADRTTSRPLCEVKRRRARLVLRWGTTWE 105
            RPYH + T SRP+ EVK+RRA LVLRW T WE
Sbjct:    1 RPYHVENTGSRPITEVKQRRAWLVLRWVTAWE 32
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BLAST of mRNA_L-elsbetiae_contig9229.18245.1 vs. uniprot
Match: A0A815TME6_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A815TME6_ADIRI)

HSP 1 Score: 51.2 bits (121), Expect = 2.370e-6
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    4 QERPYHADRTTSRPLCEVKRRRARLVLRWGTTWE 105
            Q RPYH + T+SRP+ EVK+RRARLVL W T WE
Sbjct:  243 QPRPYHVEYTSSRPITEVKQRRARLVLGWVTAWE 276
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BLAST of mRNA_L-elsbetiae_contig9229.18245.1 vs. uniprot
Match: A0A815RAB9_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815RAB9_ADIRI)

HSP 1 Score: 49.7 bits (117), Expect = 8.870e-6
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   10 RPYHADRTTSRPLCEVKRRRARLVLRWGTTWE 105
            RPYH + T+SRP+ EVK+RRARLVL W T WE
Sbjct: 1694 RPYHVEYTSSRPITEVKQRRARLVLGWVTAWE 1725
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BLAST of mRNA_L-elsbetiae_contig9229.18245.1 vs. uniprot
Match: A0A815F560_ADIRI (Hypothetical protein n=6 Tax=Adineta ricciae TaxID=249248 RepID=A0A815F560_ADIRI)

HSP 1 Score: 49.7 bits (117), Expect = 8.890e-6
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   10 RPYHADRTTSRPLCEVKRRRARLVLRWGTTWE 105
            RPYH + T+SRP+ EVK+RRARLVL W T WE
Sbjct:  821 RPYHVEYTSSRPITEVKQRRARLVLGWVTAWE 852
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BLAST of mRNA_L-elsbetiae_contig9229.18245.1 vs. uniprot
Match: A0A815DD86_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A815DD86_9BILA)

HSP 1 Score: 49.7 bits (117), Expect = 8.910e-6
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   10 RPYHADRTTSRPLCEVKRRRARLVLRWGTTWE 105
            RPYH + T+SRP+ EVK+RRARLVL W T WE
Sbjct:  505 RPYHVEYTSSRPITEVKQRRARLVLGWVTAWE 536
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9229.18245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
B8CGQ2_THAPS1.240e-876.32Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
V4BHB9_LOTGI1.370e-766.67Uncharacterized protein (Fragment) n=1 Tax=Lottia ... [more]
A0A4C1YSQ9_EUMVA2.690e-765.71Uncharacterized protein n=1 Tax=Eumeta variegata T... [more]
A0A816YMV4_9BILA4.420e-768.75Hypothetical protein n=1 Tax=Rotaria magnacalcarat... [more]
A0A3S0ZIY3_ELYCH9.530e-766.67Uncharacterized protein (Fragment) n=1 Tax=Elysia ... [more]
A0A3S0Z3S7_ELYCH1.460e-668.75Uncharacterized protein (Fragment) n=2 Tax=Elysia ... [more]
A0A815TME6_ADIRI2.370e-667.65Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A815RAB9_ADIRI8.870e-668.75Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]
A0A815F560_ADIRI8.890e-668.75Hypothetical protein n=6 Tax=Adineta ricciae TaxID... [more]
A0A815DD86_9BILA8.910e-668.75Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9229contigL-elsbetiae_contig9229:6858..6977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816995.2427332-CDS-L-elsbetiae_contig9229:6857..69771622816995.2427332-CDS-L-elsbetiae_contig9229:6857..6977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9229 6858..6977 +
1691683969.2263174-CDS-L-elsbetiae_contig9229:6857..69771691683969.2263174-CDS-L-elsbetiae_contig9229:6857..6977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9229 6858..6977 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9229.18245.1prot_L-elsbetiae_contig9229.18245.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9229 6858..6977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9229.18245.1

>prot_L-elsbetiae_contig9229.18245.1 ID=prot_L-elsbetiae_contig9229.18245.1|Name=mRNA_L-elsbetiae_contig9229.18245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=40bp
FQERPYHADRTTSRPLCEVKRRRARLVLRWGTTWEALVLF
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mRNA from alignment at L-elsbetiae_contig9229:6858..6977+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9229.18245.1 ID=mRNA_L-elsbetiae_contig9229.18245.1|Name=mRNA_L-elsbetiae_contig9229.18245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=120bp|location=Sequence derived from alignment at L-elsbetiae_contig9229:6858..6977+ (Laminarionema elsbetiae ELsaHSoW15)
TTCCAGGAACGGCCATACCACGCCGATCGCACCACATCCCGTCCGCTCTG
TGAAGTTAAGCGGCGTCGGGCCAGGCTAGTACTACGGTGGGGGACCACGT
GGGAAGCCCTGGTGCTGTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9229:6858..6977+

>mRNA_L-elsbetiae_contig9229.18245.1 ID=mRNA_L-elsbetiae_contig9229.18245.1|Name=mRNA_L-elsbetiae_contig9229.18245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=240bp|location=Sequence derived from alignment at L-elsbetiae_contig9229:6858..6977+ (Laminarionema elsbetiae ELsaHSoW15)
TTCCAGGAACGGCCATACCACGCCGATCGCACCACATCCCGTCCGCTCTG
TGAAGTTAAGCGGCGTCGGGCCAGGCTAGTACTACGGTGGGGGACCACGT
GGGAAGCCCTGGTGCTGTTTTTCCAGGAACGGCCATACCACGCCGATCGC
ACCACATCCCGTCCGCTCTGTGAAGTTAAGCGGCGTCGGGCCAGGCTAGT
ACTACGGTGGGGGACCACGTGGGAAGCCCTGGTGCTGTTT
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