mRNA_L-elsbetiae_contig9130.18161.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9130.18161.1
Unique NamemRNA_L-elsbetiae_contig9130.18161.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9130.18161.1 vs. uniprot
Match: D7FHZ2_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ2_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.690e-20
Identity = 60/85 (70.59%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:    1 EYEARAVERQEXXXXXXXXLKEAAIQQAVAGASGQLSGNLFDKMQGLAKLHESAKSALKLEFGHLTKGGNSANKGTPANGVSSSS 255
            EYEA+A ERQ+ XXXXXXX  EAAIQ  V+GAS +LSGNLFD+MQGLAKLHESAKSA+K E G L   G  A K TPANG SS+S
Sbjct:   45 EYEAKAAERQKEXXXXXXXXXEAAIQNVVSGASSKLSGNLFDRMQGLAKLHESAKSAMKFELGQLANVGKGAGKATPANGGSSTS 129
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9130.18161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHZ2_ECTSI1.690e-2070.59C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9130contigL-elsbetiae_contig9130:7067..7518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size262
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816988.092148-CDS-L-elsbetiae_contig9130:7066..71711622816988.092148-CDS-L-elsbetiae_contig9130:7066..7171Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9130 7067..7171 +
1691683963.938577-CDS-L-elsbetiae_contig9130:7066..71711691683963.938577-CDS-L-elsbetiae_contig9130:7066..7171Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9130 7067..7171 +
1622816988.103105-CDS-L-elsbetiae_contig9130:7362..75181622816988.103105-CDS-L-elsbetiae_contig9130:7362..7518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9130 7363..7518 +
1691683963.9483457-CDS-L-elsbetiae_contig9130:7362..75181691683963.9483457-CDS-L-elsbetiae_contig9130:7362..7518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9130 7363..7518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9130.18161.1prot_L-elsbetiae_contig9130.18161.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9130 7067..7518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9130.18161.1

>prot_L-elsbetiae_contig9130.18161.1 ID=prot_L-elsbetiae_contig9130.18161.1|Name=mRNA_L-elsbetiae_contig9130.18161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
EYEARAVERQEERRRREEELKEAAIQQAVAGASGQLSGNLFDKMQGLAKL
HESAKSALKLEFGHLTKGGNSANKGTPANGVSSSSGE
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mRNA from alignment at L-elsbetiae_contig9130:7067..7518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9130.18161.1 ID=mRNA_L-elsbetiae_contig9130.18161.1|Name=mRNA_L-elsbetiae_contig9130.18161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=452bp|location=Sequence derived from alignment at L-elsbetiae_contig9130:7067..7518+ (Laminarionema elsbetiae ELsaHSoW15)
GAATACGAGGCGAGGGCCGTAGAACGACAAGAGGAGCGGCGTCGAAGAGA
AGAAGAACTCAAAGAGGCAGCAATACAACAAGCCGTGGCGGGAGCTAGTG
GCCAGGTGAAGAAAGGGGGATATGACTATGCGCACTGCTGTAGCTTGGTT
GGGGGGGTTAGGGTAATCTACCAAAGGTTATTACGAGTTGTAGGTTTCAT
CACTTTGAATGGCGGCATTTTAGCAACCAATGTCCTTCAGACAGAGATAG
CATCGCTTGCTAAGCCACCTTGTTGGAATACGTTCGTCTTTCCCAGCTCT
CAGGTAACTTATTTGACAAGATGCAAGGTCTCGCAAAGCTACACGAGTCA
GCCAAGTCGGCCCTGAAGTTAGAATTCGGGCATCTCACGAAGGGGGGAAA
CAGTGCTAATAAAGGCACCCCAGCAAACGGAGTATCTTCGAGTTCAGGTG
AG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9130:7067..7518+

>mRNA_L-elsbetiae_contig9130.18161.1 ID=mRNA_L-elsbetiae_contig9130.18161.1|Name=mRNA_L-elsbetiae_contig9130.18161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig9130:7067..7518+ (Laminarionema elsbetiae ELsaHSoW15)
GAATACGAGGCGAGGGCCGTAGAACGACAAGAGGAGCGGCGTCGAAGAGA
AGAAGAACTCAAAGAGGCAGCAATACAACAAGCCGTGGCGGGAGCTAGTG
GCCAGGAATACGAGGCGAGGGCCGTAGAACGACAAGAGGAGCGGCGTCGA
AGAGAAGAAGAACTCAAAGAGGCAGCAATACAACAAGCCGTGGCGGGAGC
TAGTGGCCAGCTCTCAGGTAACTTATTTGACAAGATGCAAGGTCTCGCAA
AGCTACACGAGTCAGCCAAGTCGGCCCTGAAGTTAGAATTCGGGCATCTC
ACGAAGGGGGGAAACAGTGCTAATAAAGGCACCCCAGCAAACGGAGTATC
TTCGAGTTCAGGTGAGCTCTCAGGTAACTTATTTGACAAGATGCAAGGTC
TCGCAAAGCTACACGAGTCAGCCAAGTCGGCCCTGAAGTTAGAATTCGGG
CATCTCACGAAGGGGGGAAACAGTGCTAATAAAGGCACCCCAGCAAACGG
AGTATCTTCGAGTTCAGGTGAG
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