mRNA_L-elsbetiae_contig903.18052.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig903.18052.1
Unique NamemRNA_L-elsbetiae_contig903.18052.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig903.18052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig903contigL-elsbetiae_contig903:2664..4303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_007680.1
Exons2
Model size751
Cds size273
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig903.18052.1prot_L-elsbetiae_contig903.18052.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig903 4031..4303 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816978.6608222-UTR-L-elsbetiae_contig903:2663..31091622816978.6608222-UTR-L-elsbetiae_contig903:2663..3109Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig903 2664..3109 -
1691683956.6793876-UTR-L-elsbetiae_contig903:2663..31091691683956.6793876-UTR-L-elsbetiae_contig903:2663..3109Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig903 2664..3109 -
1622816978.6734467-UTR-L-elsbetiae_contig903:3998..40301622816978.6734467-UTR-L-elsbetiae_contig903:3998..4030Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig903 3999..4030 -
1691683956.6909685-UTR-L-elsbetiae_contig903:3998..40301691683956.6909685-UTR-L-elsbetiae_contig903:3998..4030Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig903 3999..4030 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816978.687336-CDS-L-elsbetiae_contig903:4030..43031622816978.687336-CDS-L-elsbetiae_contig903:4030..4303Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig903 4031..4303 -
1691683956.7072291-CDS-L-elsbetiae_contig903:4030..43031691683956.7072291-CDS-L-elsbetiae_contig903:4030..4303Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig903 4031..4303 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig903.18052.1

>prot_L-elsbetiae_contig903.18052.1 ID=prot_L-elsbetiae_contig903.18052.1|Name=mRNA_L-elsbetiae_contig903.18052.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
LASQFSKENWPGNRTNQQGPREIACRSSVFSKVLDVSRMQKRCDWTGSQT
VRVSIEPVDRELFKDFVHQHFSGCESFIVECVEPADAVLS*
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mRNA from alignment at L-elsbetiae_contig903:2664..4303-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig903.18052.1 ID=mRNA_L-elsbetiae_contig903.18052.1|Name=mRNA_L-elsbetiae_contig903.18052.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1640bp|location=Sequence derived from alignment at L-elsbetiae_contig903:2664..4303- (Laminarionema elsbetiae ELsaHSoW15)
CTAGCCTCCCAGTTCAGCAAGGAGAACTGGCCCGGGAACCGCACCAATCA
GCAAGGGCCGCGAGAAATCGCTTGCCGTAGTTCCGTCTTTTCGAAGGTTT
TGGATGTCTCGCGGATGCAAAAGCGTTGCGACTGGACCGGCAGTCAGACA
GTCCGGGTGAGTATCGAGCCTGTGGATCGCGAACTTTTCAAAGACTTCGT
TCATCAGCACTTCTCGGGCTGCGAGAGCTTCATCGTGGAGTGCGTGGAGC
CCGCCGACGCAGTACTCTCCTGACTTTCATTTACCGGGTTCAGCATTTCG
AAGCTGTGAGTACTGGTCACATTTGAAAACACTCTCTTGAGGCTGCTCGA
TATCTGCCGAAGGCTCGAAGAAAAGAAACTACGTCACGTCCACTCAATAT
GCATTGCTGTGAGAAGGGGGCACTTTGCGGTGTGTTGCAATGCGCAAATG
AATTGTGTTGTCTTCTGGTTTTTATTTTAAAACATAATTTACGGCCGCTC
GCGGTGCATCGTGCCAGAGGTTTGATTCGTGGTCGCACATAGTGGTTCCT
CCCCTGAGGCCACCATACCCACCTCTCTGTGGTACCTGCCTTCCATTGCT
CAACGCAAAGAAGAGTCCAGTTTCTTCCCTCAAATGTACACATGAATTAT
GTACAAGCGCTTTCACTGCCAGCAACGAAATCGACCGAAAAAAACTCAAT
CTGCAACAAAAACCCAACCCCGCTCATGCCGGGAGCCAAACGCATGACCT
GGCTGATCGAGGTTTAACGGGGATAAATGCTAAGACCACCGGGGCAGCCC
GCATATGGTTGCACGGTGGGGGAAAGGAGCATGATATATTCACGACTGAA
GAGCCCTTCTTTACACCTAGAAATTGTGGAGGGTTCATTCACAGCACCTT
TAACCCCTCTAAACCTCGTATACTGTATTGTCAAATTTGACAGGTGTACT
CATACGGCCAAGCACTTCTCTACGTGGATCACCTGCCATGCTTGATGTAT
CCCACCGTTTGTGTGCAAGACCTCGCGTCCTGGTGCATCGAGCTTGCTAC
AATATACCACGGCGACCCAGTATAACCCCAGTCGTTCTCGTGTGCAAGTT
CAGTTAAAATCACGCCCTGGATCCTGCTCGTGTGTGATCTGTGAGGACCA
CGACTGAGATCCCTCCGATATCGTGTCTTCGTTTTGGCCTCCAGGTGTTG
CTGGTTCAAGCCTGGCTGGGGTTGGCAAAAATGCGGTGTTATATTCGGCT
ACCACCACGATTGACGGGAGTAAGGTCCTGCAACGCCATTCCAGGGGGTG
TTGAAGTCTATGTTGCTAGAACGTCCAGCTTTGGATCATGTTTTGGTAGA
AACATGCACACACTGGGTACTCTGGCACTGGAAAACACGTGCCGGGCGGA
GACTGGTTGAGGCACGCACGAGCAGCCATAGACATATGCCACTTGAAGTG
TAGAAGTAACGGGTAGAGAGCGGGCGACAAGTGTTGCTGTGAGTGTCGTA
TCGCGTTTCGGTGTTCTTGGGGCAGAGAAAAGCTGTGGAAGCCGCCAAAG
CAATGCCCCCGCCCCCCCCAAAAGGATAGATGATATGTGCTTGCACGCGC
GTTTTCTCCACACAATATGGTGTTCGCACCCTCTTCTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig903:2664..4303-

>mRNA_L-elsbetiae_contig903.18052.1 ID=mRNA_L-elsbetiae_contig903.18052.1|Name=mRNA_L-elsbetiae_contig903.18052.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig903:2664..4303- (Laminarionema elsbetiae ELsaHSoW15)
CTAGCCTCCCAGTTCAGCAAGGAGAACTGGCCCGGGAACCGCACCAATCA
GCAAGGGCCGCGAGAAATCGCTTGCCGTAGTTCCGTCTTTTCGAAGGTTT
TGGATGTCTCGCGGATGCAAAAGCGTTGCGACTGGACCGGCAGTCAGACA
GTCCGGGTGAGTATCGAGCCTGTGGATCGCGAACTTTTCAAAGACTTCGT
TCATCAGCACTTCTCGGGCTGCGAGAGCTTCATCGTGGAGTGCGTGGAGC
CCGCCGACGCAGTACTCTCCTGACTAGCCTCCCAGTTCAGCAAGGAGAAC
TGGCCCGGGAACCGCACCAATCAGCAAGGGCCGCGAGAAATCGCTTGCCG
TAGTTCCGTCTTTTCGAAGGTTTTGGATGTCTCGCGGATGCAAAAGCGTT
GCGACTGGACCGGCAGTCAGACAGTCCGGGTGAGTATCGAGCCTGTGGAT
CGCGAACTTTTCAAAGACTTCGTTCATCAGCACTTCTCGGGCTGCGAGAG
CTTCATCGTGGAGTGCGTGGAGCCCGCCGACGCAGTACTCTCCTGA
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